Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:54:38 (2837893): wrapper (7.7.26015): starting
02:54:38 (2837893): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 02:54:38] Arguments: --nthreads 8
[2025-07-27 02:54:38] Threads: 8
[2025-07-27 02:54:38] Checking for CVMFS
[2025-07-27 02:54:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:54:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:54:39] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:54:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:54:41] 2.12.6.0 3531214 18022 282252 148803 3 358 30387325 32935937 20447 16776704 0 18947026 99.734 20124413 9254 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 02:54:41] CVMFS is ok
[2025-07-27 02:54:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:54:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:54:41] Further information can be found at the LHC@home message board.
[2025-07-27 02:54:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:54:41] Checking for apptainer binary...
[2025-07-27 02:54:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:54:41] Running /usr/bin/apptainer --version
[2025-07-27 02:54:42] apptainer version 1.4.1-1.el9
[2025-07-27 02:54:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:54:44] c6-12-25-2.aglt2.org
[2025-07-27 02:54:44] apptainer works
[2025-07-27 02:54:44] Set ATHENA_PROC_NUMBER=8
[2025-07-27 02:54:44] Set ATHENA_CORE_NUMBER=8
[2025-07-27 02:54:44] Starting ATLAS job with PandaID=6745351500
[2025-07-27 02:54:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:00:05 (2837893): BOINC client no longer exists - exiting
12:00:05 (2837893): timer handler: client dead, exiting
12:00:45 (782377): wrapper (7.7.26015): starting
12:00:45 (782377): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 12:00:45] Arguments: --nthreads 8
[2025-07-27 12:00:45] Threads: 8
[2025-07-27 12:00:45] This job has been restarted, cleaning up previous attempt
[2025-07-27 12:00:45] Checking for CVMFS
[2025-07-27 12:00:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 12:00:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 12:00:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 12:00:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 12:00:47] 2.12.6.0 3531214 18568 298144 148817 2 549 31534614 32935936 20082 16776704 0 19809134 99.737 20594502 9248 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 12:00:47] CVMFS is ok
[2025-07-27 12:00:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 12:00:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 12:00:47] Further information can be found at the LHC@home message board.
[2025-07-27 12:00:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 12:00:47] Checking for apptainer binary...
[2025-07-27 12:00:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 12:00:47] Running /usr/bin/apptainer --version
[2025-07-27 12:00:47] apptainer version 1.4.1-1.el9
[2025-07-27 12:00:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 12:00:47] c6-12-25-2.aglt2.org
[2025-07-27 12:00:47] apptainer works
[2025-07-27 12:00:47] Set ATHENA_PROC_NUMBER=8
[2025-07-27 12:00:47] Set ATHENA_CORE_NUMBER=8
[2025-07-27 12:00:47] Starting ATLAS job with PandaID=6745351500
[2025-07-27 12:00:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:46:20]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:46:20] 2025-07-28 04:45:18,155 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:46:20] 2025-07-28 04:45:18,155 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:46:20] 2025-07-28 04:45:18,306 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:46:20] 2025-07-28 04:45:18,309 | INFO     | sum of square deviations: 129772951563.86629
[2025-07-28 00:46:20] 2025-07-28 04:45:18,429 | INFO     | sum of deviations: 221892408419.25897
[2025-07-28 00:46:20] 2025-07-28 04:45:18,438 | INFO     | mean x: 1753655044.013369
[2025-07-28 00:46:20] 2025-07-28 04:45:18,438 | INFO     | mean y: 2250836.274064171
[2025-07-28 00:46:20] 2025-07-28 04:45:18,438 | INFO     | -- intersect: -2996237959.453185
[2025-07-28 00:46:20] 2025-07-28 04:45:18,438 | INFO     | intersect: -2996237959.453185
[2025-07-28 00:46:20] 2025-07-28 04:45:18,449 | INFO     | chi2: 5.330142539611121
[2025-07-28 00:46:20] 2025-07-28 04:45:18,453 | INFO     | sum of square deviations: 127188171411.42667
[2025-07-28 00:46:20] 2025-07-28 04:45:18,558 | INFO     | sum of deviations: 341357870886.88696
[2025-07-28 00:46:20] 2025-07-28 04:45:18,559 | INFO     | mean x: 1753654891.5208614
[2025-07-28 00:46:20] 2025-07-28 04:45:18,559 | INFO     | mean y: 2257871.3620457603
[2025-07-28 00:46:20] 2025-07-28 04:45:18,559 | INFO     | -- intersect: -4704342541.214963
[2025-07-28 00:46:20] 2025-07-28 04:45:18,560 | INFO     | intersect: -4704342541.214963
[2025-07-28 00:46:20] 2025-07-28 04:45:18,571 | INFO     | chi2: 3.7736846938963797
[2025-07-28 00:46:20] 2025-07-28 04:45:18,571 | INFO     | current chi2=3.7736846938963797 (change=29.201054833859992 %)
[2025-07-28 00:46:20] 2025-07-28 04:45:18,582 | INFO     | sum of square deviations: 124637768150.60826
[2025-07-28 00:46:20] 2025-07-28 04:45:18,683 | INFO     | sum of deviations: 368407363658.7535
[2025-07-28 00:46:20] 2025-07-28 04:45:18,696 | INFO     | mean x: 1753654739.0230353
[2025-07-28 00:46:20] 2025-07-28 04:45:18,697 | INFO     | mean y: 2259485.485094851
[2025-07-28 00:46:20] 2025-07-28 04:45:18,697 | INFO     | -- intersect: -5181236085.379737
[2025-07-28 00:46:20] 2025-07-28 04:45:18,697 | INFO     | intersect: -5181236085.379737
[2025-07-28 00:46:20] 2025-07-28 04:45:18,709 | INFO     | chi2: 3.6784384926810882
[2025-07-28 00:46:20] 2025-07-28 04:45:18,710 | INFO     | current chi2=3.6784384926810882 (change=2.523957588967204 %)
[2025-07-28 00:46:20] 2025-07-28 04:45:18,710 | INFO     | right removable region: 737
[2025-07-28 00:46:20] 2025-07-28 04:45:18,713 | INFO     | sum of square deviations: 127187571777.33768
[2025-07-28 00:46:20] 2025-07-28 04:45:18,749 | INFO     | sum of deviations: 26110049491.729446
[2025-07-28 00:46:20] 2025-07-28 04:45:18,754 | INFO     | mean x: 1753655196.5235531
[2025-07-28 00:46:20] 2025-07-28 04:45:18,754 | INFO     | mean y: 2262376.32974428
[2025-07-28 00:46:20] 2025-07-28 04:45:18,755 | INFO     | -- intersect: -357741540.19142187
[2025-07-28 00:46:20] 2025-07-28 04:45:18,755 | INFO     | intersect: -357741540.19142187
[2025-07-28 00:46:20] 2025-07-28 04:45:18,762 | INFO     | chi2: 2.261845683992025
[2025-07-28 00:46:20] 2025-07-28 04:45:18,762 | INFO     | current chi2=2.261845683992025 (change=57.565005678871664 %)
[2025-07-28 00:46:20] 2025-07-28 04:45:18,769 | INFO     | sum of square deviations: 124636795859.22057
[2025-07-28 00:46:20] 2025-07-28 04:45:18,808 | INFO     | monitor loop #719: job 0:6745351500 is in state 'finished'
[2025-07-28 00:46:20] 2025-07-28 04:45:18,809 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:46:20] 2025-07-28 04:45:18,831 | INFO     | sum of deviations: -40613312645.617935
[2025-07-28 00:46:20] 2025-07-28 04:45:18,836 | INFO     | mean x: 1753655349.0325203
[2025-07-28 00:46:20] 2025-07-28 04:45:18,837 | INFO     | mean y: 2266363.6924119242
[2025-07-28 00:46:20] 2025-07-28 04:45:18,837 | INFO     | -- intersect: 573700766.1249343
[2025-07-28 00:46:20] 2025-07-28 04:45:18,837 | INFO     | intersect: 573700766.1249343
[2025-07-28 00:46:20] 2025-07-28 04:45:18,844 | INFO     | chi2: 1.920404986653375
[2025-07-28 00:46:20] 2025-07-28 04:45:18,845 | INFO     | current chi2=1.920404986653375 (change=15.095667213513305 %)
[2025-07-28 00:46:20] 2025-07-28 04:45:18,845 | INFO     | left removable region: 20
[2025-07-28 00:46:20] 2025-07-28 04:45:18,852 | INFO     | sum of square deviations: 114296998551.07408
[2025-07-28 00:46:20] 2025-07-28 04:45:18,913 | INFO     | sum of deviations: 48642501486.88282
[2025-07-28 00:46:20] 2025-07-28 04:45:18,914 | INFO     | mean x: 1753655318.5550907
[2025-07-28 00:46:20] 2025-07-28 04:45:18,914 | INFO     | mean y: 2279510.648535565
[2025-07-28 00:46:20] 2025-07-28 04:45:18,914 | INFO     | -- intersect: -744040887.2766849
[2025-07-28 00:46:20] 2025-07-28 04:45:18,915 | INFO     | intersect: -744040887.2766849
[2025-07-28 00:46:20] 2025-07-28 04:45:18,921 | INFO     | chi2: 0.06999788788093284
[2025-07-28 00:46:20] 2025-07-28 04:45:18,922 | INFO     | -- intersect: -744040887.2766849
[2025-07-28 00:46:20] 2025-07-28 04:45:18,923 | INFO     | current memory leak: 0.43 B/s (using 717 data points, chi2=0.07)
[2025-07-28 00:46:20] 2025-07-28 04:45:18,929 | INFO     | could have reported an average CPU frequency of 1004 MHz (14 samples)
[2025-07-28 00:46:20] 2025-07-28 04:45:18,930 | INFO     | ..............................
[2025-07-28 00:46:20] 2025-07-28 04:45:18,930 | INFO     | . Timing measurements:
[2025-07-28 00:46:20] 2025-07-28 04:45:18,930 | INFO     | . get job = 0 s
[2025-07-28 00:46:20] 2025-07-28 04:45:18,930 | INFO     | . initial setup = 6 s
[2025-07-28 00:46:20] 2025-07-28 04:45:18,931 | INFO     | . payload setup = 45 s
[2025-07-28 00:46:20] 2025-07-28 04:45:18,931 | INFO     | . stage-in = 0 s
[2025-07-28 00:46:20] 2025-07-28 04:45:18,931 | INFO     | . payload execution = 45627 s
[2025-07-28 00:46:20] 2025-07-28 04:45:18,931 | INFO     | . stage-out = 8 s
[2025-07-28 00:46:20] 2025-07-28 04:45:18,931 | INFO     | . log creation = 1 s
[2025-07-28 00:46:20] 2025-07-28 04:45:18,932 | INFO     | ..............................
[2025-07-28 00:46:20] 2025-07-28 04:45:19,873 | INFO     | 
[2025-07-28 00:46:20] 2025-07-28 04:45:19,874 | INFO     | job summary report
[2025-07-28 00:46:20] 2025-07-28 04:45:19,874 | INFO     | --------------------------------------------------
[2025-07-28 00:46:20] 2025-07-28 04:45:19,874 | INFO     | PanDA job id: 6745351500
[2025-07-28 00:46:20] 2025-07-28 04:45:19,874 | INFO     | task id: 45743349
[2025-07-28 00:46:20] 2025-07-28 04:45:19,875 | INFO     | errors: (none)
[2025-07-28 00:46:20] 2025-07-28 04:45:19,875 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:46:20] 2025-07-28 04:45:19,875 | INFO     | pilot state: finished 
[2025-07-28 00:46:20] 2025-07-28 04:45:19,875 | INFO     | transexitcode: 0
[2025-07-28 00:46:20] 2025-07-28 04:45:19,875 | INFO     | exeerrorcode: 0
[2025-07-28 00:46:20] 2025-07-28 04:45:19,876 | INFO     | exeerrordiag: 
[2025-07-28 00:46:20] 2025-07-28 04:45:19,876 | INFO     | exitcode: 0
[2025-07-28 00:46:20] 2025-07-28 04:45:19,876 | INFO     | exitmsg: OK
[2025-07-28 00:46:20] 2025-07-28 04:45:19,876 | INFO     | cpuconsumptiontime: 133512 s
[2025-07-28 00:46:20] 2025-07-28 04:45:19,876 | INFO     | nevents: 400
[2025-07-28 00:46:20] 2025-07-28 04:45:19,886 | INFO     | neventsw: 0
[2025-07-28 00:46:20] 2025-07-28 04:45:19,887 | INFO     | pid: 825487
[2025-07-28 00:46:20] 2025-07-28 04:45:19,887 | INFO     | pgrp: 825487
[2025-07-28 00:46:20] 2025-07-28 04:45:19,887 | INFO     | corecount: 8
[2025-07-28 00:46:20] 2025-07-28 04:45:19,887 | INFO     | event service: False
[2025-07-28 00:46:20] 2025-07-28 04:45:19,887 | INFO     | sizes: {0: 2396647, 1: 2397332, 2: 2397332, 3: 2397559, 4: 2397587, 15: 2397587, 27: 2397743, 37: 2398033, 38: 2398061, 45680: 2430054, 45681: 2430053, 45690: 2439
[2025-07-28 00:46:20] 2025-07-28 04:45:19,888 | INFO     | --------------------------------------------------
[2025-07-28 00:46:20] 2025-07-28 04:45:19,888 | INFO     | 
[2025-07-28 00:46:20] 2025-07-28 04:45:19,888 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-28 00:46:20] 2025-07-28 04:45:20,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,247 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,248 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,248 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,248 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,248 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,249 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,249 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,249 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,249 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,250 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,254 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,255 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,255 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,255 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,255 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:46:20] 2025-07-28 04:45:20,255 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,256 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:46:20] 2025-07-28 04:45:20,256 | INFO     | job 6745351500 has completed (purged errors)
[2025-07-28 00:46:20] 2025-07-28 04:45:20,256 | INFO     | overall cleanup function is called
[2025-07-28 00:46:20] 2025-07-28 04:45:21,280 | INFO     | --- collectZombieJob: --- 10, [825487]
[2025-07-28 00:46:20] 2025-07-28 04:45:21,280 | INFO     | zombie collector waiting for pid 825487
[2025-07-28 00:46:20] 2025-07-28 04:45:21,281 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:46:20] 2025-07-28 04:45:21,281 | INFO     | collected zombie processes
[2025-07-28 00:46:20] 2025-07-28 04:45:21,281 | INFO     | will attempt to kill all subprocesses of pid=825487
[2025-07-28 00:46:20] 2025-07-28 04:45:24,201 | INFO     | process IDs to be killed: [825487] (in reverse order)
[2025-07-28 00:46:20] 2025-07-28 04:45:24,826 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:46:20] 2025-07-28 04:45:24,827 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:46:20] 2025-07-28 04:45:24,905 | INFO     | did not find any defunct processes belonging to 825487
[2025-07-28 00:46:20] 2025-07-28 04:45:24,942 | INFO     | did not find any defunct processes belonging to 825487
[2025-07-28 00:46:20] 2025-07-28 04:45:24,943 | INFO     | ready for new job
[2025-07-28 00:46:20] 2025-07-28 04:45:24,943 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:46:20] 2025-07-28 04:45:24,948 | INFO     | ***************************************
[2025-07-28 00:46:20] 2025-07-28 04:45:24,948 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:46:20] 2025-07-28 04:45:24,948 | INFO     | ***************************************
[2025-07-28 00:46:20] 2025-07-28 04:45:24,949 | INFO     | 
[2025-07-28 00:46:20] 2025-07-28 04:45:25,013 | INFO     | architecture information:
[2025-07-28 00:46:20] 2025-07-28 04:45:25,018 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:46:20] 2025-07-28 04:45:25,098 | INFO     | cat /etc/os-release:
[2025-07-28 00:46:20] NAME="CentOS Linux"
[2025-07-28 00:46:20] VERSION="7 (Core)"
[2025-07-28 00:46:20] ID="centos"
[2025-07-28 00:46:20] ID_LIKE="rhel fedora"
[2025-07-28 00:46:20] VERSION_ID="7"
[2025-07-28 00:46:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:46:20] ANSI_COLOR="0;31"
[2025-07-28 00:46:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:46:20] HOME_URL="https://www.centos.org/"
[2025-07-28 00:46:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:46:20] 
[2025-07-28 00:46:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:46:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:46:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:46:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:46:20] 
[2025-07-28 00:46:20] 2025-07-28 04:45:25,099 | INFO     | ***************************************
[2025-07-28 00:46:20] 2025-07-28 04:45:25,603 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-28 00:46:20] 2025-07-28 04:45:25,805 | INFO     | sufficient remaining disk space (95551488000 B)
[2025-07-28 00:46:20] 2025-07-28 04:45:25,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:46:20] 2025-07-28 04:45:25,806 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:46:20] 2025-07-28 04:45:25,813 | INFO     | update_server=False
[2025-07-28 00:46:20] 2025-07-28 04:45:25,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:46:20] 2025-07-28 04:45:25,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:46:20] 2025-07-28 04:45:25,815 | INFO     | aborting loop
[2025-07-28 00:46:20] 2025-07-28 04:45:25,930 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:46:20] 2025-07-28 04:45:26,068 | INFO     | all job control threads have been joined
[2025-07-28 00:46:20] 2025-07-28 04:45:26,098 | INFO     | all payload control threads have been joined
[2025-07-28 00:46:20] 2025-07-28 04:45:26,362 | INFO     | all data control threads have been joined
[2025-07-28 00:46:20] 2025-07-28 04:45:26,820 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:26,825 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:26,981 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,074 | INFO     | [job] control thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,105 | INFO     | [payload] control thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,346 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,347 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,348 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,368 | INFO     | [data] control thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:46:20] 2025-07-28 04:45:27,853 | INFO     | [job] validate thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,938 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,939 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:27,940 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:28,397 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:28,560 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:46:20] 2025-07-28 04:45:29,566 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:31,783 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:46:20] 2025-07-28 04:45:33,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603223992128)>', '<ExcThread(monitor, started 140602582750976)>']
[2025-07-28 00:46:20] 2025-07-28 04:45:38,061 | INFO     | all workflow threads have been joined
[2025-07-28 00:46:20] 2025-07-28 04:45:38,110 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:46:20] 2025-07-28 04:45:38,112 | INFO     | traces error code: 0
[2025-07-28 00:46:20] 2025-07-28 04:45:38,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:46:20] 2025-07-28 04:45:57,379 | INFO     | PID=798937 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 00:46:20] 2025-07-28 04:45:57,380 | INFO     | .. there are 20 such processes running
[2025-07-28 00:46:20] 2025-07-28 04:45:57,387 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:46:20] 2025-07-28 04:45:57,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:46:20] 2025-07-28 04:45:57,388 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:46:20] 2025-07-28 04:45:57,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:46:20] 2025-07-28 04:45:57,389 | INFO     | [monitor] control thread has ended
[2025-07-28 00:46:20] 2025-07-28 04:45:58,527 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:46:20] 2025-07-28 04:45:58,584 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:46:20] 2025-07-28 04:45:58,599 [wrapper] pilotpid: 798937
[2025-07-28 00:46:20] 2025-07-28 04:45:58,641 [wrapper] Pilot exit status: 0
[2025-07-28 00:46:20] 2025-07-28 04:45:58,774 [wrapper] pandaids: 6745351500 6745351500
[2025-07-28 00:46:20] 2025-07-28 04:45:59,129 [wrapper] cleanup supervisor_pilot 2292327 798938
[2025-07-28 00:46:20] 2025-07-28 04:45:59,154 [wrapper] Test setup, not cleaning
[2025-07-28 00:46:20] 2025-07-28 04:45:59,181 [wrapper] apfmon messages muted
[2025-07-28 00:46:20] 2025-07-28 04:45:59,207 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:46:20] 2025-07-28 04:45:59,219 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:46:20]  *** Error codes and diagnostics ***
[2025-07-28 00:46:20]     "exeErrorCode": 0,
[2025-07-28 00:46:20]     "exeErrorDiag": "",
[2025-07-28 00:46:20]     "pilotErrorCode": 0,
[2025-07-28 00:46:20]     "pilotErrorDiag": "",
[2025-07-28 00:46:20]  *** Listing of results directory ***
[2025-07-28 00:46:20] total 498012
[2025-07-28 00:46:20] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 13:41 pilot3.tar.gz
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 14:02 queuedata.json
[2025-07-28 00:46:20] -rwx------. 1 boincer umatlas     36292 Jul 26 14:02 runpilot2-wrapper.sh
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas       100 Jul 27 02:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:46:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 02:54 run_atlas
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas       105 Jul 27 02:54 job.xml
[2025-07-28 00:46:20] -rw-r--r--. 3 boincer umatlas 145425947 Jul 27 02:54 EVNT.45743347._002371.pool.root.1
[2025-07-28 00:46:20] -rw-r--r--. 3 boincer umatlas 145425947 Jul 27 02:54 ATLAS.root_0
[2025-07-28 00:46:20] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 02:54 input.tar.gz
[2025-07-28 00:46:20] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:54 start_atlas.sh
[2025-07-28 00:46:20] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 02:54 shared
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas         0 Jul 27 02:54 boinc_lockfile
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 12:00 pandaJob.out
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas    980101 Jul 27 12:01 agis_schedconf.cvmfs.json
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas 211292701 Jul 28 00:41 HITS.45743349._042087.pool.root.1
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas       532 Jul 28 00:42 boinc_task_state.xml
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas      1060 Jul 28 00:44 memory_monitor_summary.json
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas   1593052 Jul 28 00:44 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas    472473 Jul 28 00:44 log.45743349._042087.job.log.tgz.1
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas      6859 Jul 28 00:45 init_data.xml
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas      7841 Jul 28 00:45 heartbeat.json
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas        96 Jul 28 00:45 pilot_heartbeat.json
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas       822 Jul 28 00:45 pilotlog.txt
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas   1500043 Jul 28 00:45 log.45743349._042087.job.log.1
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 00:45 boinc_mmap_file
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas       357 Jul 28 00:45 output.list
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas        29 Jul 28 00:45 wrapper_checkpoint.txt
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas       620 Jul 28 00:46 runtime_log
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas   1986560 Jul 28 00:46 result.tar.gz
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas      8756 Jul 28 00:46 runtime_log.err
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas       789 Jul 28 00:46 C5SKDm0Oyz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmamSLDmmG2u2m.diag
[2025-07-28 00:46:20] -rw-r--r--. 1 boincer umatlas     23368 Jul 28 00:46 stderr.txt
[2025-07-28 00:46:20] HITS file was successfully produced:
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas 211292701 Jul 28 00:41 shared/HITS.pool.root.1
[2025-07-28 00:46:20]  *** Contents of shared directory: ***
[2025-07-28 00:46:20] total 350856
[2025-07-28 00:46:20] -rw-r--r--. 3 boincer umatlas 145425947 Jul 27 02:54 ATLAS.root_0
[2025-07-28 00:46:20] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 02:54 input.tar.gz
[2025-07-28 00:46:20] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:54 start_atlas.sh
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas 211292701 Jul 28 00:41 HITS.pool.root.1
[2025-07-28 00:46:20] -rw-------. 1 boincer umatlas   1986560 Jul 28 00:46 result.tar.gz
00:46:22 (782377): run_atlas exited; CPU time 135769.566050
00:46:22 (782377): called boinc_finish(0)

</stderr_txt>
]]>

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