Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:09:34 (2120405): wrapper (7.7.26015): starting
03:09:34 (2120405): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 03:09:34] Arguments: --nthreads 8
[2025-07-27 03:09:34] Threads: 8
[2025-07-27 03:09:34] Checking for CVMFS
[2025-07-27 03:09:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:09:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:09:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:09:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:09:34] 2.13.1.0 116762 8075 208108 148803 0 188 34812456 40960001 12824 16776704 0 111313311 99.999 314452 38129 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 03:09:34] CVMFS is ok
[2025-07-27 03:09:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:09:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:09:34] Further information can be found at the LHC@home message board.
[2025-07-27 03:09:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:09:34] Checking for apptainer binary...
[2025-07-27 03:09:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:09:34] Running /usr/bin/apptainer --version
[2025-07-27 03:09:34] apptainer version 1.4.1-1.el9
[2025-07-27 03:09:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:09:34] c-208-39.aglt2.org
[2025-07-27 03:09:34] apptainer works
[2025-07-27 03:09:34] Set ATHENA_PROC_NUMBER=8
[2025-07-27 03:09:34] Set ATHENA_CORE_NUMBER=8
[2025-07-27 03:09:34] Starting ATLAS job with PandaID=6745948345
[2025-07-27 03:09:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:21:23]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:21:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 04:21:23]  replicas=None
[2025-07-27 04:21:23]  scope=mc23_13p6TeV
[2025-07-27 04:21:23]  status=None
[2025-07-27 04:21:23]  status_code=0
[2025-07-27 04:21:23]  storage_token=
[2025-07-27 04:21:23]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6745948345/log.45759912._000045.job.log.tgz.1
[2025-07-27 04:21:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/67/log.45759912._000045.job.log.tgz.1
[2025-07-27 04:21:23]  workdir=None
[2025-07-27 04:21:23] ]
[2025-07-27 04:21:23] 2025-07-27 08:20:42,236 | INFO     | transferring file log.45759912._000045.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6745948345/log.45759912._000045.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:21:23] 2025-07-27 08:20:42,236 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6745948345/log.45759912._000045.job.log.tgz.1 /tmp/boinchome/slots/4/log.45759912._000045.job
[2025-07-27 04:21:23] 2025-07-27 08:20:42,255 | INFO     | adding to output.list: log.45759912._000045.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/67/log.45759912._000045.job.log.tg
[2025-07-27 04:21:23] 2025-07-27 08:20:42,256 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:21:23] 2025-07-27 08:20:42,256 | INFO     | summary of transferred files:
[2025-07-27 04:21:23] 2025-07-27 08:20:42,256 | INFO     |  -- lfn=log.45759912._000045.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:21:23] 2025-07-27 08:20:42,256 | INFO     | stage-out finished correctly
[2025-07-27 04:21:23] 2025-07-27 08:20:43,034 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:21:23] 2025-07-27 08:20:44,352 | INFO     | monitor loop #311: job 0:6745948345 is in state 'finished'
[2025-07-27 04:21:23] 2025-07-27 08:20:44,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:21:23] 2025-07-27 08:20:45,575 | INFO     | job 6745948345 has state=finished
[2025-07-27 04:21:23] 2025-07-27 08:20:45,576 | INFO     | preparing for final server update for job 6745948345 in state='finished'
[2025-07-27 04:21:23] 2025-07-27 08:20:45,576 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:21:23] 2025-07-27 08:20:45,576 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:21:23] 2025-07-27 08:20:45,576 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:21:23] 2025-07-27 08:20:45,576 | INFO     | job 6745948345 has finished - writing final server update
[2025-07-27 04:21:23] 2025-07-27 08:20:45,576 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:21:23] 2025-07-27 08:20:45,577 | INFO     | executing command: lscpu
[2025-07-27 04:21:23] 2025-07-27 08:20:45,630 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:21:23] 2025-07-27 08:20:46,856 | INFO     | monitor loop #312: job 0:6745948345 is in state 'finished'
[2025-07-27 04:21:23] 2025-07-27 08:20:46,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:21:23] 2025-07-27 08:20:49,358 | INFO     | monitor loop #313: job 0:6745948345 is in state 'finished'
[2025-07-27 04:21:23] 2025-07-27 08:20:49,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:21:23] 2025-07-27 08:20:49,431 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 04:21:23] 2025-07-27 08:20:49,436 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.2241328124996
[2025-07-27 04:21:23] 2025-07-27 08:20:49,449 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6745948345/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:21:23] 2025-07-27 08:20:49,450 | INFO     | extracted standard info from prmon json
[2025-07-27 04:21:23] 2025-07-27 08:20:49,450 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:21:23] 2025-07-27 08:20:49,450 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:21:23] 2025-07-27 08:20:49,450 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:21:23] 2025-07-27 08:20:49,450 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:21:23] 2025-07-27 08:20:49,451 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:21:23] 2025-07-27 08:20:49,451 | INFO     | sum of square deviations: 77515872.0
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | sum of deviations: 741180866.0
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | mean x: 1753602403.0
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | mean y: 2507503.238095238
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | -- intersect: -16764852704.942509
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | intersect: -16764852704.942509
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | chi2: 0.0007932009944686101
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | -- intersect: -16764852704.942509
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | current memory leak: 9.56 B/s (using 63 data points, chi2=0.00)
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | could have reported an average CPU frequency of 3780 MHz (6 samples)
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | ..............................
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | . Timing measurements:
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | . get job = 0 s
[2025-07-27 04:21:23] 2025-07-27 08:20:49,452 | INFO     | . initial setup = 2 s
[2025-07-27 04:21:23] 2025-07-27 08:20:49,453 | INFO     | . payload setup = 5 s
[2025-07-27 04:21:23] 2025-07-27 08:20:49,453 | INFO     | . stage-in = 0 s
[2025-07-27 04:21:23] 2025-07-27 08:20:49,453 | INFO     | . payload execution = 4235 s
[2025-07-27 04:21:23] 2025-07-27 08:20:49,453 | INFO     | . stage-out = 0 s
[2025-07-27 04:21:23] 2025-07-27 08:20:49,453 | INFO     | . log creation = 0 s
[2025-07-27 04:21:23] 2025-07-27 08:20:49,453 | INFO     | ..............................
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | 
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | job summary report
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | --------------------------------------------------
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | PanDA job id: 6745948345
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | task id: 45759912
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | errors: (none)
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | pilot state: finished 
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | transexitcode: 0
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | exeerrorcode: 0
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | exeerrordiag: 
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | exitcode: 0
[2025-07-27 04:21:23] 2025-07-27 08:20:49,748 | INFO     | exitmsg: OK
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | cpuconsumptiontime: 32035 s
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | nevents: 400
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | neventsw: 0
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | pid: 2136373
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | pgrp: 2136373
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | corecount: 8
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | event service: False
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | sizes: {0: 2397461, 4: 2397723, 11: 2397751, 4244: 2432910, 4245: 2432910, 4252: 2433104}
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | --------------------------------------------------
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | 
[2025-07-27 04:21:23] 2025-07-27 08:20:49,749 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-07-27 04:21:23] 2025-07-27 08:20:49,766 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,766 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,766 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,766 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,766 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,766 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,766 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | job 6745948345 has completed (purged errors)
[2025-07-27 04:21:23] 2025-07-27 08:20:49,767 | INFO     | overall cleanup function is called
[2025-07-27 04:21:23] 2025-07-27 08:20:50,775 | INFO     | --- collectZombieJob: --- 10, [2136373]
[2025-07-27 04:21:23] 2025-07-27 08:20:50,775 | INFO     | zombie collector waiting for pid 2136373
[2025-07-27 04:21:23] 2025-07-27 08:20:50,775 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:21:23] 2025-07-27 08:20:50,775 | INFO     | collected zombie processes
[2025-07-27 04:21:23] 2025-07-27 08:20:50,775 | INFO     | will attempt to kill all subprocesses of pid=2136373
[2025-07-27 04:21:23] 2025-07-27 08:20:51,132 | INFO     | process IDs to be killed: [2136373] (in reverse order)
[2025-07-27 04:21:23] 2025-07-27 08:20:51,252 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:21:23] 2025-07-27 08:20:51,252 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:21:23] 2025-07-27 08:20:51,269 | INFO     | did not find any defunct processes belonging to 2136373
[2025-07-27 04:21:23] 2025-07-27 08:20:51,281 | INFO     | did not find any defunct processes belonging to 2136373
[2025-07-27 04:21:23] 2025-07-27 08:20:51,281 | INFO     | ready for new job
[2025-07-27 04:21:23] 2025-07-27 08:20:51,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:21:23] 2025-07-27 08:20:51,282 | INFO     | ***************************************
[2025-07-27 04:21:23] 2025-07-27 08:20:51,283 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:21:23] 2025-07-27 08:20:51,283 | INFO     | ***************************************
[2025-07-27 04:21:23] 2025-07-27 08:20:51,283 | INFO     | 
[2025-07-27 04:21:23] 2025-07-27 08:20:51,287 | INFO     | architecture information:
[2025-07-27 04:21:23] 2025-07-27 08:20:51,287 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:21:23] 2025-07-27 08:20:51,301 | INFO     | cat /etc/os-release:
[2025-07-27 04:21:23] NAME="CentOS Linux"
[2025-07-27 04:21:23] VERSION="7 (Core)"
[2025-07-27 04:21:23] ID="centos"
[2025-07-27 04:21:23] ID_LIKE="rhel fedora"
[2025-07-27 04:21:23] VERSION_ID="7"
[2025-07-27 04:21:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:21:23] ANSI_COLOR="0;31"
[2025-07-27 04:21:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:21:23] HOME_URL="https://www.centos.org/"
[2025-07-27 04:21:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:21:23] 
[2025-07-27 04:21:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:21:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:21:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:21:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:21:23] 
[2025-07-27 04:21:23] 2025-07-27 08:20:51,301 | INFO     | ***************************************
[2025-07-27 04:21:23] 2025-07-27 08:20:51,804 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-07-27 04:21:23] 2025-07-27 08:20:51,821 | INFO     | sufficient remaining disk space (164798398464 B)
[2025-07-27 04:21:23] 2025-07-27 08:20:51,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:21:23] 2025-07-27 08:20:51,822 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:21:23] 2025-07-27 08:20:51,822 | INFO     | update_server=False
[2025-07-27 04:21:23] 2025-07-27 08:20:51,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:21:23] 2025-07-27 08:20:51,862 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 04:21:23] 2025-07-27 08:20:51,862 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 04:21:23] 2025-07-27 08:20:51,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:21:23] 2025-07-27 08:20:51,862 | INFO     | will abort loop
[2025-07-27 04:21:23] 2025-07-27 08:20:52,623 | INFO     | all data control threads have been joined
[2025-07-27 04:21:23] 2025-07-27 08:20:52,719 | INFO     | all payload control threads have been joined
[2025-07-27 04:21:23] 2025-07-27 08:20:52,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:21:23] 2025-07-27 08:20:52,826 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:52,868 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:53,187 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:53,234 | INFO     | all job control threads have been joined
[2025-07-27 04:21:23] 2025-07-27 08:20:53,239 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:53,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:21:23] 2025-07-27 08:20:53,629 | INFO     | [data] control thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:53,725 | INFO     | [payload] control thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:53,782 | INFO     | [job] validate thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:53,907 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:54,000 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:54,114 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:54,239 | INFO     | [job] control thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:54,318 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:54,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:21:23] 2025-07-27 08:20:54,830 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:55,524 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:20:57,599 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:21:02,023 | INFO     | job.realtimelogging is not enabled
[2025-07-27 04:21:23] 2025-07-27 08:21:03,028 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:21:23] 2025-07-27 08:21:05,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140384228919104)>', '<ExcThread(monitor, started 140383732352768)>']
[2025-07-27 04:21:23] 2025-07-27 08:21:10,082 | INFO     | all workflow threads have been joined
[2025-07-27 04:21:23] 2025-07-27 08:21:10,082 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:21:23] 2025-07-27 08:21:10,082 | INFO     | traces error code: 0
[2025-07-27 04:21:23] 2025-07-27 08:21:10,082 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:21:23] 2025-07-27 08:21:23,152 | INFO     | PID=2124013 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 04:21:23] 2025-07-27 08:21:23,152 | INFO     | .. there are 16 such processes running
[2025-07-27 04:21:23] 2025-07-27 08:21:23,153 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:21:23] 2025-07-27 08:21:23,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:21:23] 2025-07-27 08:21:23,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:21:23] 2025-07-27 08:21:23,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:21:23] 2025-07-27 08:21:23,153 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 04:21:23] 2025-07-27 08:21:23,153 | INFO     | [monitor] control thread has ended
[2025-07-27 04:21:23] 2025-07-27 08:21:23,236 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:21:23] 2025-07-27 08:21:23,239 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:21:23] 2025-07-27 08:21:23,242 [wrapper] pilotpid: 2124013
[2025-07-27 04:21:23] 2025-07-27 08:21:23,245 [wrapper] Pilot exit status: 0
[2025-07-27 04:21:23] 2025-07-27 08:21:23,256 [wrapper] pandaids: 6745948345
[2025-07-27 04:21:23] 2025-07-27 08:21:23,340 [wrapper] cleanup supervisor_pilot 2449662 2124014
[2025-07-27 04:21:23] 2025-07-27 08:21:23,343 [wrapper] Test setup, not cleaning
[2025-07-27 04:21:23] 2025-07-27 08:21:23,347 [wrapper] apfmon messages muted
[2025-07-27 04:21:23] 2025-07-27 08:21:23,350 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:21:23] 2025-07-27 08:21:23,353 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:21:23]  *** Error codes and diagnostics ***
[2025-07-27 04:21:23]     "exeErrorCode": 0,
[2025-07-27 04:21:23]     "exeErrorDiag": "",
[2025-07-27 04:21:23]     "pilotErrorCode": 0,
[2025-07-27 04:21:23]     "pilotErrorDiag": "",
[2025-07-27 04:21:23]  *** Listing of results directory ***
[2025-07-27 04:21:23] total 399848
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-27 04:21:23] -rwx------. 1 boincer umatlas     36292 Jul 26 21:46 runpilot2-wrapper.sh
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 21:46 queuedata.json
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas       100 Jul 27 03:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:21:23] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 03:09 run_atlas
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas       105 Jul 27 03:09 job.xml
[2025-07-27 04:21:23] -rw-r--r--. 2 boincer umatlas 234506750 Jul 27 03:09 EVNT.45759910._000002.pool.root.1
[2025-07-27 04:21:23] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:09 start_atlas.sh
[2025-07-27 04:21:23] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 03:09 shared
[2025-07-27 04:21:23] -rw-r--r--. 2 boincer umatlas    564535 Jul 27 03:09 input.tar.gz
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas         0 Jul 27 03:09 boinc_lockfile
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas      2554 Jul 27 03:09 pandaJob.out
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas    980125 Jul 27 03:09 agis_schedconf.cvmfs.json
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas   1593052 Jul 27 03:09 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:21:23] drwx------. 6 boincer umatlas      4096 Jul 27 03:09 pilot3
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas      7174 Jul 27 04:10 init_data.xml
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas       529 Jul 27 04:20 boinc_task_state.xml
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas 169542248 Jul 27 04:20 HITS.45759912._000045.pool.root.1
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas      1029 Jul 27 04:20 memory_monitor_summary.json
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas    309247 Jul 27 04:20 log.45759912._000045.job.log.tgz.1
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas      7758 Jul 27 04:20 heartbeat.json
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 04:21 boinc_mmap_file
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas        27 Jul 27 04:21 wrapper_checkpoint.txt
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas        95 Jul 27 04:21 pilot_heartbeat.json
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas       893 Jul 27 04:21 pilotlog.txt
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas    428952 Jul 27 04:21 log.45759912._000045.job.log.1
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas       357 Jul 27 04:21 output.list
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:21 runtime_log
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas    757760 Jul 27 04:21 result.tar.gz
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 04:21 runtime_log.err
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas       651 Jul 27 04:21 qRzMDm2d5z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvpTLDmRjD51m.diag
[2025-07-27 04:21:23] -rw-r--r--. 1 boincer umatlas     21829 Jul 27 04:21 stderr.txt
[2025-07-27 04:21:23] HITS file was successfully produced:
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas 169542248 Jul 27 04:20 shared/HITS.pool.root.1
[2025-07-27 04:21:23]  *** Contents of shared directory: ***
[2025-07-27 04:21:23] total 395900
[2025-07-27 04:21:23] -rw-r--r--. 2 boincer umatlas 234506750 Jul 27 03:09 ATLAS.root_0
[2025-07-27 04:21:23] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:09 start_atlas.sh
[2025-07-27 04:21:23] -rw-r--r--. 2 boincer umatlas    564535 Jul 27 03:09 input.tar.gz
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas 169542248 Jul 27 04:20 HITS.pool.root.1
[2025-07-27 04:21:23] -rw-------. 1 boincer umatlas    757760 Jul 27 04:21 result.tar.gz
04:21:24 (2120405): run_atlas exited; CPU time 32151.724077
04:21:24 (2120405): called boinc_finish(0)

</stderr_txt>
]]>

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