Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:44:18 (8252): wrapper (7.7.26015): starting
02:44:18 (8252): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 02:44:18] Arguments: --nthreads 12
[2025-07-27 02:44:18] Threads: 12
[2025-07-27 02:44:18] Checking for CVMFS
[2025-07-27 02:44:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:44:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:44:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:44:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:44:18] 2.11.2.0 2925 111658 92888 148803 2 58 12302752 20275201 1 130560 0 37941623 99.972 9365793 10335 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 02:44:18] CVMFS is ok
[2025-07-27 02:44:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:44:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:44:18] Further information can be found at the LHC@home message board.
[2025-07-27 02:44:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:44:18] Checking for apptainer binary...
[2025-07-27 02:44:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:44:18] Running /usr/bin/apptainer --version
[2025-07-27 02:44:18] apptainer version 1.3.2-1.el7
[2025-07-27 02:44:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:44:19] c-205-10.aglt2.org
[2025-07-27 02:44:19] apptainer works
[2025-07-27 02:44:19] Set ATHENA_PROC_NUMBER=12
[2025-07-27 02:44:19] Set ATHENA_CORE_NUMBER=12
[2025-07-27 02:44:19] Starting ATLAS job with PandaID=6745940206
[2025-07-27 02:44:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:21:32]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:21:32]  is_tar=False
[2025-07-27 04:21:32]  lfn=log.45758425._000113.job.log.tgz.1
[2025-07-27 04:21:32]  mtime=0
[2025-07-27 04:21:32]  protocol_id=None
[2025-07-27 04:21:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 04:21:32]  replicas=None
[2025-07-27 04:21:32]  scope=mc23_13p6TeV
[2025-07-27 04:21:32]  status=None
[2025-07-27 04:21:32]  status_code=0
[2025-07-27 04:21:32]  storage_token=
[2025-07-27 04:21:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745940206/log.45758425._000113.job.log.tgz.1
[2025-07-27 04:21:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/b5/log.45758425._000113.job.log.tgz.1
[2025-07-27 04:21:32]  workdir=None
[2025-07-27 04:21:32] ]
[2025-07-27 04:21:32] 2025-07-27 08:20:52,974 | INFO     | transferring file log.45758425._000113.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745940206/log.45758425._000113.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:21:32] 2025-07-27 08:20:52,975 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745940206/log.45758425._000113.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758425._000113.job
[2025-07-27 04:21:32] 2025-07-27 08:20:52,997 | INFO     | adding to output.list: log.45758425._000113.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/b5/log.45758425._000113.job.log.tg
[2025-07-27 04:21:32] 2025-07-27 08:20:52,998 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:21:32] 2025-07-27 08:20:52,998 | INFO     | summary of transferred files:
[2025-07-27 04:21:32] 2025-07-27 08:20:52,998 | INFO     |  -- lfn=log.45758425._000113.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:21:32] 2025-07-27 08:20:52,998 | INFO     | stage-out finished correctly
[2025-07-27 04:21:32] 2025-07-27 08:20:53,084 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:21:32] 2025-07-27 08:20:54,449 | INFO     | monitor loop #429: job 0:6745940206 is in state 'finished'
[2025-07-27 04:21:32] 2025-07-27 08:20:54,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:21:32] 2025-07-27 08:20:55,605 | INFO     | job 6745940206 has state=finished
[2025-07-27 04:21:32] 2025-07-27 08:20:55,605 | INFO     | preparing for final server update for job 6745940206 in state='finished'
[2025-07-27 04:21:32] 2025-07-27 08:20:55,606 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:21:32] 2025-07-27 08:20:55,606 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:21:32] 2025-07-27 08:20:55,606 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:21:32] 2025-07-27 08:20:55,606 | INFO     | job 6745940206 has finished - writing final server update
[2025-07-27 04:21:32] 2025-07-27 08:20:55,606 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:21:32] 2025-07-27 08:20:55,607 | INFO     | executing command: lscpu
[2025-07-27 04:21:32] 2025-07-27 08:20:55,637 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:21:32] 2025-07-27 08:20:56,952 | INFO     | monitor loop #430: job 0:6745940206 is in state 'finished'
[2025-07-27 04:21:32] 2025-07-27 08:20:56,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:21:32] 2025-07-27 08:20:59,456 | INFO     | monitor loop #431: job 0:6745940206 is in state 'finished'
[2025-07-27 04:21:32] 2025-07-27 08:20:59,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:21:32] 2025-07-27 08:21:00,280 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 04:21:32] 2025-07-27 08:21:00,284 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-27 04:21:32] 2025-07-27 08:21:00,287 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745940206/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:21:32] 2025-07-27 08:21:00,287 | INFO     | extracted standard info from prmon json
[2025-07-27 04:21:32] 2025-07-27 08:21:00,287 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:21:32] 2025-07-27 08:21:00,288 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:21:32] 2025-07-27 08:21:00,288 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:21:32] 2025-07-27 08:21:00,288 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:21:32] 2025-07-27 08:21:00,290 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:21:32] 2025-07-27 08:21:00,290 | INFO     | sum of square deviations: 211285822.0
[2025-07-27 04:21:32] 2025-07-27 08:21:00,290 | INFO     | sum of deviations: -10225070130.5
[2025-07-27 04:21:32] 2025-07-27 08:21:00,291 | INFO     | mean x: 1753601662.5
[2025-07-27 04:21:32] 2025-07-27 08:21:00,291 | INFO     | mean y: 2751630.5568181816
[2025-07-27 04:21:32] 2025-07-27 08:21:00,291 | INFO     | -- intersect: 84867414154.02654
[2025-07-27 04:21:32] 2025-07-27 08:21:00,291 | INFO     | intersect: 84867414154.02654
[2025-07-27 04:21:32] 2025-07-27 08:21:00,291 | INFO     | chi2: 0.10082640015317719
[2025-07-27 04:21:32] 2025-07-27 08:21:00,291 | INFO     | -- intersect: 84867414154.02654
[2025-07-27 04:21:32] 2025-07-27 08:21:00,291 | INFO     | current memory leak: -48.39 B/s (using 88 data points, chi2=0.10)
[2025-07-27 04:21:32] 2025-07-27 08:21:00,292 | INFO     | could have reported an average CPU frequency of 2147 MHz (7 samples)
[2025-07-27 04:21:32] 2025-07-27 08:21:00,292 | INFO     | ..............................
[2025-07-27 04:21:32] 2025-07-27 08:21:00,292 | INFO     | . Timing measurements:
[2025-07-27 04:21:32] 2025-07-27 08:21:00,292 | INFO     | . get job = 0 s
[2025-07-27 04:21:32] 2025-07-27 08:21:00,292 | INFO     | . initial setup = 2 s
[2025-07-27 04:21:32] 2025-07-27 08:21:00,292 | INFO     | . payload setup = 9 s
[2025-07-27 04:21:32] 2025-07-27 08:21:00,292 | INFO     | . stage-in = 0 s
[2025-07-27 04:21:32] 2025-07-27 08:21:00,292 | INFO     | . payload execution = 5748 s
[2025-07-27 04:21:32] 2025-07-27 08:21:00,293 | INFO     | . stage-out = 0 s
[2025-07-27 04:21:32] 2025-07-27 08:21:00,293 | INFO     | . log creation = 0 s
[2025-07-27 04:21:32] 2025-07-27 08:21:00,293 | INFO     | ..............................
[2025-07-27 04:21:32] 2025-07-27 08:21:00,550 | INFO     | 
[2025-07-27 04:21:32] 2025-07-27 08:21:00,550 | INFO     | job summary report
[2025-07-27 04:21:32] 2025-07-27 08:21:00,550 | INFO     | --------------------------------------------------
[2025-07-27 04:21:32] 2025-07-27 08:21:00,551 | INFO     | PanDA job id: 6745940206
[2025-07-27 04:21:32] 2025-07-27 08:21:00,551 | INFO     | task id: 45758425
[2025-07-27 04:21:32] 2025-07-27 08:21:00,551 | INFO     | errors: (none)
[2025-07-27 04:21:32] 2025-07-27 08:21:00,551 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:21:32] 2025-07-27 08:21:00,551 | INFO     | pilot state: finished 
[2025-07-27 04:21:32] 2025-07-27 08:21:00,551 | INFO     | transexitcode: 0
[2025-07-27 04:21:32] 2025-07-27 08:21:00,552 | INFO     | exeerrorcode: 0
[2025-07-27 04:21:32] 2025-07-27 08:21:00,552 | INFO     | exeerrordiag: 
[2025-07-27 04:21:32] 2025-07-27 08:21:00,552 | INFO     | exitcode: 0
[2025-07-27 04:21:32] 2025-07-27 08:21:00,552 | INFO     | exitmsg: OK
[2025-07-27 04:21:32] 2025-07-27 08:21:00,552 | INFO     | cpuconsumptiontime: 63243 s
[2025-07-27 04:21:32] 2025-07-27 08:21:00,552 | INFO     | nevents: 400
[2025-07-27 04:21:32] 2025-07-27 08:21:00,553 | INFO     | neventsw: 0
[2025-07-27 04:21:32] 2025-07-27 08:21:00,553 | INFO     | pid: 19910
[2025-07-27 04:21:32] 2025-07-27 08:21:00,553 | INFO     | pgrp: 19910
[2025-07-27 04:21:32] 2025-07-27 08:21:00,553 | INFO     | corecount: 12
[2025-07-27 04:21:32] 2025-07-27 08:21:00,553 | INFO     | event service: False
[2025-07-27 04:21:32] 2025-07-27 08:21:00,553 | INFO     | sizes: {0: 2397428, 5: 2397690, 11: 2397746, 5762: 2424391, 5764: 2433445, 5771: 2433583}
[2025-07-27 04:21:32] 2025-07-27 08:21:00,553 | INFO     | --------------------------------------------------
[2025-07-27 04:21:32] 2025-07-27 08:21:00,554 | INFO     | 
[2025-07-27 04:21:32] 2025-07-27 08:21:00,554 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 04:21:32] 2025-07-27 08:21:00,580 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,580 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,580 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,580 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,581 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,581 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,581 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,581 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,581 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,581 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,582 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,582 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,582 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,582 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:21:32] 2025-07-27 08:21:00,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:21:32] 2025-07-27 08:21:00,583 | INFO     | job 6745940206 has completed (purged errors)
[2025-07-27 04:21:32] 2025-07-27 08:21:00,583 | INFO     | overall cleanup function is called
[2025-07-27 04:21:32] 2025-07-27 08:21:01,591 | INFO     | --- collectZombieJob: --- 10, [19910]
[2025-07-27 04:21:32] 2025-07-27 08:21:01,591 | INFO     | zombie collector waiting for pid 19910
[2025-07-27 04:21:32] 2025-07-27 08:21:01,591 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:21:32] 2025-07-27 08:21:01,591 | INFO     | collected zombie processes
[2025-07-27 04:21:32] 2025-07-27 08:21:01,591 | INFO     | will attempt to kill all subprocesses of pid=19910
[2025-07-27 04:21:32] 2025-07-27 08:21:01,687 | INFO     | process IDs to be killed: [19910] (in reverse order)
[2025-07-27 04:21:32] 2025-07-27 08:21:01,737 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:21:32] 2025-07-27 08:21:01,738 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:21:32] 2025-07-27 08:21:01,742 | INFO     | did not find any defunct processes belonging to 19910
[2025-07-27 04:21:32] 2025-07-27 08:21:01,745 | INFO     | did not find any defunct processes belonging to 19910
[2025-07-27 04:21:32] 2025-07-27 08:21:01,746 | INFO     | ready for new job
[2025-07-27 04:21:32] 2025-07-27 08:21:01,746 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:21:32] 2025-07-27 08:21:01,747 | INFO     | ***************************************
[2025-07-27 04:21:32] 2025-07-27 08:21:01,747 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:21:32] 2025-07-27 08:21:01,747 | INFO     | ***************************************
[2025-07-27 04:21:32] 2025-07-27 08:21:01,747 | INFO     | 
[2025-07-27 04:21:32] 2025-07-27 08:21:01,748 | INFO     | architecture information:
[2025-07-27 04:21:32] 2025-07-27 08:21:01,749 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:21:32] 2025-07-27 08:21:01,762 | INFO     | cat /etc/os-release:
[2025-07-27 04:21:32] NAME="CentOS Linux"
[2025-07-27 04:21:32] VERSION="7 (Core)"
[2025-07-27 04:21:32] ID="centos"
[2025-07-27 04:21:32] ID_LIKE="rhel fedora"
[2025-07-27 04:21:32] VERSION_ID="7"
[2025-07-27 04:21:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:21:32] ANSI_COLOR="0;31"
[2025-07-27 04:21:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:21:32] HOME_URL="https://www.centos.org/"
[2025-07-27 04:21:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:21:32] 
[2025-07-27 04:21:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:21:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:21:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:21:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:21:32] 
[2025-07-27 04:21:32] 2025-07-27 08:21:01,763 | INFO     | ***************************************
[2025-07-27 04:21:32] 2025-07-27 08:21:02,266 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 04:21:32] 2025-07-27 08:21:02,283 | INFO     | sufficient remaining disk space (29369565184 B)
[2025-07-27 04:21:32] 2025-07-27 08:21:02,283 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:21:32] 2025-07-27 08:21:02,283 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:21:32] 2025-07-27 08:21:02,283 | INFO     | update_server=False
[2025-07-27 04:21:32] 2025-07-27 08:21:02,283 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:21:32] 2025-07-27 08:21:02,284 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:21:32] 2025-07-27 08:21:02,858 | INFO     | all payload control threads have been joined
[2025-07-27 04:21:32] 2025-07-27 08:21:02,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:21:32] 2025-07-27 08:21:02,964 | INFO     | aborting loop
[2025-07-27 04:21:32] 2025-07-27 08:21:02,972 | INFO     | all data control threads have been joined
[2025-07-27 04:21:32] 2025-07-27 08:21:03,289 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:03,289 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:03,491 | INFO     | all job control threads have been joined
[2025-07-27 04:21:32] 2025-07-27 08:21:03,497 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:03,595 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:21:32] 2025-07-27 08:21:03,654 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:03,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:21:32] 2025-07-27 08:21:03,691 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:03,864 | INFO     | [payload] control thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:03,970 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:03,973 | INFO     | [data] control thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:04,043 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:04,497 | INFO     | [job] control thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:04,583 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:04,624 | INFO     | [job] validate thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:04,698 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:05,600 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:07,681 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:12,299 | INFO     | job.realtimelogging is not enabled
[2025-07-27 04:21:32] 2025-07-27 08:21:13,300 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:21:32] 2025-07-27 08:21:13,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140679735248704)>', '<ExcThread(monitor, started 140679137179392)>']
[2025-07-27 04:21:32] 2025-07-27 08:21:18,843 | INFO     | all workflow threads have been joined
[2025-07-27 04:21:32] 2025-07-27 08:21:18,843 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:21:32] 2025-07-27 08:21:18,843 | INFO     | traces error code: 0
[2025-07-27 04:21:32] 2025-07-27 08:21:18,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:21:32] 2025-07-27 08:21:32,344 | INFO     | PID=11857 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 04:21:32] 2025-07-27 08:21:32,344 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:21:32] 2025-07-27 08:21:32,344 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:21:32] 2025-07-27 08:21:32,344 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:21:32] 2025-07-27 08:21:32,344 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:21:32] 2025-07-27 08:21:32,345 | INFO     | [monitor] control thread has ended
[2025-07-27 04:21:32] 2025-07-27 08:21:32,435 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:21:32] 2025-07-27 08:21:32,439 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:21:32] 2025-07-27 08:21:32,443 [wrapper] pilotpid: 11857
[2025-07-27 04:21:32] 2025-07-27 08:21:32,447 [wrapper] Pilot exit status: 0
[2025-07-27 04:21:32] 2025-07-27 08:21:32,463 [wrapper] pandaids: 6745940206
[2025-07-27 04:21:32] 2025-07-27 08:21:32,505 [wrapper] cleanup supervisor_pilot 10807 11858
[2025-07-27 04:21:32] 2025-07-27 08:21:32,509 [wrapper] Test setup, not cleaning
[2025-07-27 04:21:32] 2025-07-27 08:21:32,513 [wrapper] apfmon messages muted
[2025-07-27 04:21:32] 2025-07-27 08:21:32,517 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:21:32] 2025-07-27 08:21:32,521 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:21:32]  *** Error codes and diagnostics ***
[2025-07-27 04:21:32]     "exeErrorCode": 0,
[2025-07-27 04:21:32]     "exeErrorDiag": "",
[2025-07-27 04:21:32]     "pilotErrorCode": 0,
[2025-07-27 04:21:32]     "pilotErrorDiag": "",
[2025-07-27 04:21:32]  *** Listing of results directory ***
[2025-07-27 04:21:32] total 406668
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 21:40 pilot3.tar.gz
[2025-07-27 04:21:32] -rwx------ 1 boincer umatlas     36292 Jul 26 21:43 runpilot2-wrapper.sh
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 21:43 queuedata.json
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas       100 Jul 27 02:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:21:32] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 02:44 run_atlas
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas       105 Jul 27 02:44 job.xml
[2025-07-27 04:21:32] -rw-r--r-- 2 boincer umatlas 238426133 Jul 27 02:44 EVNT.45758423._000005.pool.root.1
[2025-07-27 04:21:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 02:44 start_atlas.sh
[2025-07-27 04:21:32] drwxrwx--x 2 boincer umatlas      4096 Jul 27 02:44 shared
[2025-07-27 04:21:32] -rw-r--r-- 2 boincer umatlas    542882 Jul 27 02:44 input.tar.gz
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas         0 Jul 27 02:44 boinc_lockfile
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas      2569 Jul 27 02:44 pandaJob.out
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas    980125 Jul 27 02:44 agis_schedconf.cvmfs.json
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas   1593052 Jul 27 02:44 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:21:32] drwx------ 4 boincer umatlas      4096 Jul 27 02:44 pilot3
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 04:18 init_data.xml
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas 172296369 Jul 27 04:20 HITS.45758425._000113.pool.root.1
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas      1049 Jul 27 04:20 memory_monitor_summary.json
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas        95 Jul 27 04:20 pilot_heartbeat.json
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas       529 Jul 27 04:20 boinc_task_state.xml
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas    375282 Jul 27 04:20 log.45758425._000113.job.log.tgz.1
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas      7844 Jul 27 04:21 heartbeat.json
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 04:21 boinc_mmap_file
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas        27 Jul 27 04:21 wrapper_checkpoint.txt
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas       745 Jul 27 04:21 pilotlog.txt
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas    541734 Jul 27 04:21 log.45758425._000113.job.log.1
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas       357 Jul 27 04:21 output.list
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas       620 Jul 27 04:21 runtime_log
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas    931840 Jul 27 04:21 result.tar.gz
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 04:21 runtime_log.err
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas       659 Jul 27 04:21 qqjKDmLb5z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2oTLDmUPvtDm.diag
[2025-07-27 04:21:32] -rw-r--r-- 1 boincer umatlas     21532 Jul 27 04:21 stderr.txt
[2025-07-27 04:21:32] HITS file was successfully produced:
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas 172296369 Jul 27 04:20 shared/HITS.pool.root.1
[2025-07-27 04:21:32]  *** Contents of shared directory: ***
[2025-07-27 04:21:32] total 402564
[2025-07-27 04:21:32] -rw-r--r-- 2 boincer umatlas 238426133 Jul 27 02:44 ATLAS.root_0
[2025-07-27 04:21:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 02:44 start_atlas.sh
[2025-07-27 04:21:32] -rw-r--r-- 2 boincer umatlas    542882 Jul 27 02:44 input.tar.gz
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas 172296369 Jul 27 04:20 HITS.pool.root.1
[2025-07-27 04:21:32] -rw------- 1 boincer umatlas    931840 Jul 27 04:21 result.tar.gz
04:21:34 (8252): run_atlas exited; CPU time 63113.250902
04:21:34 (8252): called boinc_finish(0)

</stderr_txt>
]]>

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