Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:00:07 (474271): wrapper (7.7.26015): starting
04:00:07 (474271): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 04:00:07] Arguments: --nthreads 12
[2025-07-27 04:00:07] Threads: 12
[2025-07-27 04:00:07] Checking for CVMFS
[2025-07-27 04:00:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 04:00:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 04:00:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 04:00:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 04:00:08] 2.13.1.0 5053 10484 191612 148804 2 373 29987206 40960001 4906 16776704 0 11799263 99.871 14313714 48689 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 04:00:08] CVMFS is ok
[2025-07-27 04:00:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 04:00:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 04:00:08] Further information can be found at the LHC@home message board.
[2025-07-27 04:00:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 04:00:08] Checking for apptainer binary...
[2025-07-27 04:00:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 04:00:08] Running /usr/bin/apptainer --version
[2025-07-27 04:00:08] apptainer version 1.4.1-1.el9
[2025-07-27 04:00:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 04:00:08] c-210-33-1.aglt2.org
[2025-07-27 04:00:08] apptainer works
[2025-07-27 04:00:08] Set ATHENA_PROC_NUMBER=12
[2025-07-27 04:00:08] Set ATHENA_CORE_NUMBER=12
[2025-07-27 04:00:08] Starting ATLAS job with PandaID=6745940146
[2025-07-27 04:00:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:28:26]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:28:26]  scope=mc23_13p6TeV
[2025-07-27 05:28:26]  status=None
[2025-07-27 05:28:26]  status_code=0
[2025-07-27 05:28:26]  storage_token=
[2025-07-27 05:28:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745940146/log.45758425._000053.job.log.tgz.1
[2025-07-27 05:28:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/43/log.45758425._000053.job.log.tgz.1
[2025-07-27 05:28:26]  workdir=None
[2025-07-27 05:28:26] ]
[2025-07-27 05:28:26] 2025-07-27 09:27:46,376 | WARNING  | aborting job monitor tasks since payload process 484374 is not running
[2025-07-27 05:28:26] 2025-07-27 09:27:46,428 | INFO     | transferring file log.45758425._000053.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745940146/log.45758425._000053.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 05:28:26] 2025-07-27 09:27:46,429 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745940146/log.45758425._000053.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758425._000053.job
[2025-07-27 05:28:26] 2025-07-27 09:27:46,446 | INFO     | adding to output.list: log.45758425._000053.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/43/log.45758425._000053.job.log.tg
[2025-07-27 05:28:26] 2025-07-27 09:27:46,447 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 05:28:26] 2025-07-27 09:27:46,447 | INFO     | summary of transferred files:
[2025-07-27 05:28:26] 2025-07-27 09:27:46,447 | INFO     |  -- lfn=log.45758425._000053.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 05:28:26] 2025-07-27 09:27:46,448 | INFO     | stage-out finished correctly
[2025-07-27 05:28:26] 2025-07-27 09:27:48,880 | INFO     | monitor loop #395: job 0:6745940146 is in state 'finished'
[2025-07-27 05:28:26] 2025-07-27 09:27:48,880 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:28:26] 2025-07-27 09:27:48,924 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 05:28:26] 2025-07-27 09:27:50,489 | INFO     | job 6745940146 has state=finished
[2025-07-27 05:28:26] 2025-07-27 09:27:50,489 | INFO     | preparing for final server update for job 6745940146 in state='finished'
[2025-07-27 05:28:26] 2025-07-27 09:27:50,490 | INFO     | this job has now completed (state=finished)
[2025-07-27 05:28:26] 2025-07-27 09:27:50,490 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 05:28:26] 2025-07-27 09:27:50,490 | INFO     | log transfer has been attempted: DONE
[2025-07-27 05:28:26] 2025-07-27 09:27:50,490 | INFO     | job 6745940146 has finished - writing final server update
[2025-07-27 05:28:26] 2025-07-27 09:27:50,490 | INFO     | total number of processed events: 400 (read)
[2025-07-27 05:28:26] 2025-07-27 09:27:50,491 | INFO     | executing command: lscpu
[2025-07-27 05:28:26] 2025-07-27 09:27:50,537 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 05:28:26] 2025-07-27 09:27:51,383 | INFO     | monitor loop #396: job 0:6745940146 is in state 'finished'
[2025-07-27 05:28:26] 2025-07-27 09:27:51,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:28:26] 2025-07-27 09:27:52,286 | INFO     | PID=477856 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 05:28:26] 2025-07-27 09:27:52,286 | INFO     | .. there are 7 such processes running
[2025-07-27 05:28:26] 2025-07-27 09:27:53,885 | INFO     | monitor loop #397: job 0:6745940146 is in state 'finished'
[2025-07-27 05:28:26] 2025-07-27 09:27:53,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:28:26] 2025-07-27 09:27:54,139 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 05:28:26] 2025-07-27 09:27:54,146 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2716.7367857142854
[2025-07-27 05:28:26] 2025-07-27 09:27:54,155 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745940146/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:28:26] 2025-07-27 09:27:54,156 | INFO     | extracted standard info from prmon json
[2025-07-27 05:28:26] 2025-07-27 09:27:54,156 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:28:26] 2025-07-27 09:27:54,156 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:28:26] 2025-07-27 09:27:54,156 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:28:26] 2025-07-27 09:27:54,156 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:28:26] 2025-07-27 09:27:54,158 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:28:26] 2025-07-27 09:27:54,158 | INFO     | sum of square deviations: 152858680.0
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | sum of deviations: -3659899106.0000005
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | mean x: 1753605931.0
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | mean y: 2786256.025316456
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | -- intersect: 41989415861.50927
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | intersect: 41989415861.50927
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | chi2: 0.09900773385327417
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | -- intersect: 41989415861.50927
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | current memory leak: -23.94 B/s (using 79 data points, chi2=0.10)
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | could have reported an average CPU frequency of 2723 MHz (6 samples)
[2025-07-27 05:28:26] 2025-07-27 09:27:54,159 | INFO     | ..............................
[2025-07-27 05:28:26] 2025-07-27 09:27:54,160 | INFO     | . Timing measurements:
[2025-07-27 05:28:26] 2025-07-27 09:27:54,160 | INFO     | . get job = 0 s
[2025-07-27 05:28:26] 2025-07-27 09:27:54,160 | INFO     | . initial setup = 2 s
[2025-07-27 05:28:26] 2025-07-27 09:27:54,160 | INFO     | . payload setup = 7 s
[2025-07-27 05:28:26] 2025-07-27 09:27:54,160 | INFO     | . stage-in = 0 s
[2025-07-27 05:28:26] 2025-07-27 09:27:54,160 | INFO     | . payload execution = 5219 s
[2025-07-27 05:28:26] 2025-07-27 09:27:54,160 | INFO     | . stage-out = 0 s
[2025-07-27 05:28:26] 2025-07-27 09:27:54,160 | INFO     | . log creation = 0 s
[2025-07-27 05:28:26] 2025-07-27 09:27:54,160 | INFO     | ..............................
[2025-07-27 05:28:26] 2025-07-27 09:27:54,240 | INFO     | 
[2025-07-27 05:28:26] 2025-07-27 09:27:54,240 | INFO     | job summary report
[2025-07-27 05:28:26] 2025-07-27 09:27:54,240 | INFO     | --------------------------------------------------
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | PanDA job id: 6745940146
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | task id: 45758425
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | errors: (none)
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | pilot state: finished 
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | transexitcode: 0
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | exeerrorcode: 0
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | exeerrordiag: 
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | exitcode: 0
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | exitmsg: OK
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | cpuconsumptiontime: 56467 s
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | nevents: 400
[2025-07-27 05:28:26] 2025-07-27 09:27:54,241 | INFO     | neventsw: 0
[2025-07-27 05:28:26] 2025-07-27 09:27:54,242 | INFO     | pid: 484374
[2025-07-27 05:28:26] 2025-07-27 09:27:54,242 | INFO     | pgrp: 484374
[2025-07-27 05:28:26] 2025-07-27 09:27:54,242 | INFO     | corecount: 12
[2025-07-27 05:28:26] 2025-07-27 09:27:54,242 | INFO     | event service: False
[2025-07-27 05:28:26] 2025-07-27 09:27:54,242 | INFO     | sizes: {0: 2396645, 1: 2397501, 6: 2397763, 12: 2397791, 5231: 2433080, 5234: 2433080, 5239: 2433402}
[2025-07-27 05:28:26] 2025-07-27 09:27:54,242 | INFO     | --------------------------------------------------
[2025-07-27 05:28:26] 2025-07-27 09:27:54,242 | INFO     | 
[2025-07-27 05:28:26] 2025-07-27 09:27:54,242 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 05:28:26] 2025-07-27 09:27:54,263 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,263 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,263 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,263 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,264 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,264 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,264 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,264 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,265 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,265 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:28:26] 2025-07-27 09:27:54,265 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,265 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:28:26] 2025-07-27 09:27:54,265 | INFO     | job 6745940146 has completed (purged errors)
[2025-07-27 05:28:26] 2025-07-27 09:27:54,265 | INFO     | overall cleanup function is called
[2025-07-27 05:28:26] 2025-07-27 09:27:55,273 | INFO     | --- collectZombieJob: --- 10, [484374]
[2025-07-27 05:28:26] 2025-07-27 09:27:55,274 | INFO     | zombie collector waiting for pid 484374
[2025-07-27 05:28:26] 2025-07-27 09:27:55,274 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:28:26] 2025-07-27 09:27:55,274 | INFO     | collected zombie processes
[2025-07-27 05:28:26] 2025-07-27 09:27:55,274 | INFO     | will attempt to kill all subprocesses of pid=484374
[2025-07-27 05:28:26] 2025-07-27 09:27:55,532 | INFO     | process IDs to be killed: [484374] (in reverse order)
[2025-07-27 05:28:26] 2025-07-27 09:27:55,597 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:28:26] 2025-07-27 09:27:55,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:28:26] 2025-07-27 09:27:55,605 | INFO     | did not find any defunct processes belonging to 484374
[2025-07-27 05:28:26] 2025-07-27 09:27:55,612 | INFO     | did not find any defunct processes belonging to 484374
[2025-07-27 05:28:26] 2025-07-27 09:27:55,613 | INFO     | ready for new job
[2025-07-27 05:28:26] 2025-07-27 09:27:55,613 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:28:26] 2025-07-27 09:27:55,614 | INFO     | ***************************************
[2025-07-27 05:28:26] 2025-07-27 09:27:55,615 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:28:26] 2025-07-27 09:27:55,615 | INFO     | ***************************************
[2025-07-27 05:28:26] 2025-07-27 09:27:55,615 | INFO     | 
[2025-07-27 05:28:26] 2025-07-27 09:27:55,618 | INFO     | architecture information:
[2025-07-27 05:28:26] 2025-07-27 09:27:55,618 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:28:26] 2025-07-27 09:27:55,632 | INFO     | cat /etc/os-release:
[2025-07-27 05:28:26] NAME="CentOS Linux"
[2025-07-27 05:28:26] VERSION="7 (Core)"
[2025-07-27 05:28:26] ID="centos"
[2025-07-27 05:28:26] ID_LIKE="rhel fedora"
[2025-07-27 05:28:26] VERSION_ID="7"
[2025-07-27 05:28:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:28:26] ANSI_COLOR="0;31"
[2025-07-27 05:28:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:28:26] HOME_URL="https://www.centos.org/"
[2025-07-27 05:28:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:28:26] 
[2025-07-27 05:28:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:28:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:28:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:28:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:28:26] 
[2025-07-27 05:28:26] 2025-07-27 09:27:55,632 | INFO     | ***************************************
[2025-07-27 05:28:26] 2025-07-27 09:27:56,135 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 05:28:26] 2025-07-27 09:27:56,149 | INFO     | sufficient remaining disk space (75284611072 B)
[2025-07-27 05:28:26] 2025-07-27 09:27:56,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:28:26] 2025-07-27 09:27:56,149 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:28:26] 2025-07-27 09:27:56,149 | INFO     | update_server=False
[2025-07-27 05:28:26] 2025-07-27 09:27:56,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:28:26] 2025-07-27 09:27:56,149 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:28:26] 2025-07-27 09:27:56,388 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 05:28:26] 2025-07-27 09:27:56,389 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 05:28:26] 2025-07-27 09:27:56,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:28:26] 2025-07-27 09:27:56,389 | INFO     | will abort loop
[2025-07-27 05:28:26] 2025-07-27 09:27:56,681 | INFO     | all data control threads have been joined
[2025-07-27 05:28:26] 2025-07-27 09:27:56,947 | INFO     | all payload control threads have been joined
[2025-07-27 05:28:26] 2025-07-27 09:27:57,013 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:28:26] 2025-07-27 09:27:57,100 | INFO     | all job control threads have been joined
[2025-07-27 05:28:26] 2025-07-27 09:27:57,155 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:57,155 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:57,159 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:57,394 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:57,517 | INFO     | [job] validate thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:57,687 | INFO     | [data] control thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:57,723 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:57,927 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:57,953 | INFO     | [payload] control thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:57,966 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:58,106 | INFO     | [job] control thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:58,246 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:58,352 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:59,019 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:27:59,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:28:26] 2025-07-27 09:28:03,507 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:28:06,200 | INFO     | job.realtimelogging is not enabled
[2025-07-27 05:28:26] 2025-07-27 09:28:07,205 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:28:26] 2025-07-27 09:28:09,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140115589072704)>', '<ExcThread(monitor, started 140115095570176)>']
[2025-07-27 05:28:26] 2025-07-27 09:28:14,128 | INFO     | all workflow threads have been joined
[2025-07-27 05:28:26] 2025-07-27 09:28:14,129 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:28:26] 2025-07-27 09:28:14,129 | INFO     | traces error code: 0
[2025-07-27 05:28:26] 2025-07-27 09:28:14,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:28:26] 2025-07-27 09:28:26,561 | INFO     | PID=477856 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 05:28:26] 2025-07-27 09:28:26,561 | INFO     | .. there are 7 such processes running
[2025-07-27 05:28:26] 2025-07-27 09:28:26,561 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:28:26] 2025-07-27 09:28:26,561 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:28:26] 2025-07-27 09:28:26,561 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:28:26] 2025-07-27 09:28:26,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:28:26] 2025-07-27 09:28:26,561 | INFO     | [monitor] control thread has ended
[2025-07-27 05:28:26] 2025-07-27 09:28:26,723 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:28:26] 2025-07-27 09:28:26,725 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:28:26] 2025-07-27 09:28:26,727 [wrapper] pilotpid: 477856
[2025-07-27 05:28:26] 2025-07-27 09:28:26,730 [wrapper] Pilot exit status: 0
[2025-07-27 05:28:26] 2025-07-27 09:28:26,740 [wrapper] pandaids: 6745940146
[2025-07-27 05:28:26] 2025-07-27 09:28:26,783 [wrapper] cleanup supervisor_pilot  561308 477857
[2025-07-27 05:28:26] 2025-07-27 09:28:26,786 [wrapper] Test setup, not cleaning
[2025-07-27 05:28:26] 2025-07-27 09:28:26,788 [wrapper] apfmon messages muted
[2025-07-27 05:28:26] 2025-07-27 09:28:26,791 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:28:26] 2025-07-27 09:28:26,794 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:28:26]  *** Error codes and diagnostics ***
[2025-07-27 05:28:26]     "exeErrorCode": 0,
[2025-07-27 05:28:26]     "exeErrorDiag": "",
[2025-07-27 05:28:26]     "pilotErrorCode": 0,
[2025-07-27 05:28:26]     "pilotErrorDiag": "",
[2025-07-27 05:28:26]  *** Listing of results directory ***
[2025-07-27 05:28:26] total 408692
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 21:40 pilot3.tar.gz
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 21:43 queuedata.json
[2025-07-27 05:28:26] -rwx------. 1 boincer umatlas     36292 Jul 26 21:43 runpilot2-wrapper.sh
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas       100 Jul 27 04:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:28:26] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 04:00 run_atlas
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas       105 Jul 27 04:00 job.xml
[2025-07-27 05:28:26] -rw-r--r--. 2 boincer umatlas 235995737 Jul 27 04:00 EVNT.45758423._000003.pool.root.1
[2025-07-27 05:28:26] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 04:00 start_atlas.sh
[2025-07-27 05:28:26] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 04:00 shared
[2025-07-27 05:28:26] -rw-r--r--. 2 boincer umatlas    542889 Jul 27 04:00 input.tar.gz
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas         0 Jul 27 04:00 boinc_lockfile
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas      2567 Jul 27 04:00 pandaJob.out
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas    980125 Jul 27 04:00 agis_schedconf.cvmfs.json
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas   1593052 Jul 27 04:00 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:28:26] drwx------. 4 boincer umatlas      4096 Jul 27 04:00 pilot3
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas      6840 Jul 27 05:21 init_data.xml
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas 176870461 Jul 27 05:27 HITS.45758425._000053.pool.root.1
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas       529 Jul 27 05:27 boinc_task_state.xml
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas        95 Jul 27 05:27 pilot_heartbeat.json
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas      1032 Jul 27 05:27 memory_monitor_summary.json
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas    359608 Jul 27 05:27 log.45758425._000053.job.log.tgz.1
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas      7803 Jul 27 05:27 heartbeat.json
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas        27 Jul 27 05:28 wrapper_checkpoint.txt
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 05:28 boinc_mmap_file
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas       821 Jul 27 05:28 pilotlog.txt
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas    517309 Jul 27 05:28 log.45758425._000053.job.log.1
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas       357 Jul 27 05:28 output.list
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas       620 Jul 27 05:28 runtime_log
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas    901120 Jul 27 05:28 result.tar.gz
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas      8672 Jul 27 05:28 runtime_log.err
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas       656 Jul 27 05:28 5gmKDmAb5z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKl1KDmj6hXAo.diag
[2025-07-27 05:28:26] -rw-r--r--. 1 boincer umatlas     22007 Jul 27 05:28 stderr.txt
[2025-07-27 05:28:26] HITS file was successfully produced:
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas 176870461 Jul 27 05:27 shared/HITS.pool.root.1
[2025-07-27 05:28:26]  *** Contents of shared directory: ***
[2025-07-27 05:28:26] total 404628
[2025-07-27 05:28:26] -rw-r--r--. 2 boincer umatlas 235995737 Jul 27 04:00 ATLAS.root_0
[2025-07-27 05:28:26] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 04:00 start_atlas.sh
[2025-07-27 05:28:26] -rw-r--r--. 2 boincer umatlas    542889 Jul 27 04:00 input.tar.gz
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas 176870461 Jul 27 05:27 HITS.pool.root.1
[2025-07-27 05:28:26] -rw-------. 1 boincer umatlas    901120 Jul 27 05:28 result.tar.gz
05:28:28 (474271): run_atlas exited; CPU time 56540.810801
05:28:28 (474271): called boinc_finish(0)

</stderr_txt>
]]>

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