Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:52:19 (844331): wrapper (7.7.26015): starting
02:52:19 (844331): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 02:52:19] Arguments: --nthreads 8
[2025-07-27 02:52:19] Threads: 8
[2025-07-27 02:52:19] Checking for CVMFS
[2025-07-27 02:52:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:52:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:52:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:52:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:52:20] 2.13.1.0 4026694 7838 90588 148803 3 188 21182535 40960001 12923 16776704 0 109279681 99.999 281650 59083 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 02:52:20] CVMFS is ok
[2025-07-27 02:52:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:52:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:52:20] Further information can be found at the LHC@home message board.
[2025-07-27 02:52:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:52:20] Checking for apptainer binary...
[2025-07-27 02:52:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:52:20] Running /usr/bin/apptainer --version
[2025-07-27 02:52:20] apptainer version 1.4.1-1.el9
[2025-07-27 02:52:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:52:20] c-208-38.aglt2.org
[2025-07-27 02:52:20] apptainer works
[2025-07-27 02:52:20] Set ATHENA_PROC_NUMBER=8
[2025-07-27 02:52:20] Set ATHENA_CORE_NUMBER=8
[2025-07-27 02:52:20] Starting ATLAS job with PandaID=6745940200
[2025-07-27 02:52:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 03:57:41]  *** The last 200 lines of the pilot log: ***
[2025-07-27 03:57:41]  is_altstaged=None
[2025-07-27 03:57:41]  is_tar=False
[2025-07-27 03:57:41]  lfn=log.45758425._000107.job.log.tgz.1
[2025-07-27 03:57:41]  mtime=0
[2025-07-27 03:57:41]  protocol_id=None
[2025-07-27 03:57:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 03:57:41]  replicas=None
[2025-07-27 03:57:41]  scope=mc23_13p6TeV
[2025-07-27 03:57:41]  status=None
[2025-07-27 03:57:41]  status_code=0
[2025-07-27 03:57:41]  storage_token=
[2025-07-27 03:57:41]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-6745940200/log.45758425._000107.job.log.tgz.1
[2025-07-27 03:57:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/2c/log.45758425._000107.job.log.tgz.1
[2025-07-27 03:57:41]  workdir=None
[2025-07-27 03:57:41] ]
[2025-07-27 03:57:41] 2025-07-27 07:57:04,987 | INFO     | transferring file log.45758425._000107.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6745940200/log.45758425._000107.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 03:57:41] 2025-07-27 07:57:04,988 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6745940200/log.45758425._000107.job.log.tgz.1 /tmp/boinchome/slots/6/log.45758425._000107.job
[2025-07-27 03:57:41] 2025-07-27 07:57:05,005 | INFO     | adding to output.list: log.45758425._000107.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/2c/log.45758425._000107.job.log.tg
[2025-07-27 03:57:41] 2025-07-27 07:57:05,006 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 03:57:41] 2025-07-27 07:57:05,006 | INFO     | summary of transferred files:
[2025-07-27 03:57:41] 2025-07-27 07:57:05,006 | INFO     |  -- lfn=log.45758425._000107.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 03:57:41] 2025-07-27 07:57:05,006 | INFO     | stage-out finished correctly
[2025-07-27 03:57:41] 2025-07-27 07:57:05,062 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 03:57:41] 2025-07-27 07:57:05,117 | INFO     | job 6745940200 has state=finished
[2025-07-27 03:57:41] 2025-07-27 07:57:05,117 | INFO     | preparing for final server update for job 6745940200 in state='finished'
[2025-07-27 03:57:41] 2025-07-27 07:57:05,117 | INFO     | this job has now completed (state=finished)
[2025-07-27 03:57:41] 2025-07-27 07:57:05,117 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 03:57:41] 2025-07-27 07:57:05,118 | INFO     | log transfer has been attempted: DONE
[2025-07-27 03:57:41] 2025-07-27 07:57:05,118 | INFO     | job 6745940200 has finished - writing final server update
[2025-07-27 03:57:41] 2025-07-27 07:57:05,118 | INFO     | total number of processed events: 400 (read)
[2025-07-27 03:57:41] 2025-07-27 07:57:05,118 | INFO     | executing command: lscpu
[2025-07-27 03:57:41] 2025-07-27 07:57:05,173 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 03:57:41] 2025-07-27 07:57:05,732 | INFO     | monitor loop #286: job 0:6745940200 is in state 'finished'
[2025-07-27 03:57:41] 2025-07-27 07:57:05,733 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 03:57:41] 2025-07-27 07:57:08,236 | INFO     | monitor loop #287: job 0:6745940200 is in state 'finished'
[2025-07-27 03:57:41] 2025-07-27 07:57:08,237 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 03:57:41] 2025-07-27 07:57:08,734 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 03:57:41] 2025-07-27 07:57:08,739 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3773.777429687498
[2025-07-27 03:57:41] 2025-07-27 07:57:08,752 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6745940200/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 03:57:41] 2025-07-27 07:57:08,752 | INFO     | extracted standard info from prmon json
[2025-07-27 03:57:41] 2025-07-27 07:57:08,752 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 03:57:41] 2025-07-27 07:57:08,753 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 03:57:41] 2025-07-27 07:57:08,753 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 03:57:41] 2025-07-27 07:57:08,753 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | fitting pss+swap vs Time
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | sum of square deviations: 57407588.0
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | sum of deviations: -172952446.00000003
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | mean x: 1753601187.0
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | mean y: 2513093.807017544
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | -- intersect: 5285605889.835192
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | intersect: 5285605889.835192
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | chi2: 0.0009129309299021119
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | -- intersect: 5285605889.835192
[2025-07-27 03:57:41] 2025-07-27 07:57:08,754 | INFO     | current memory leak: -3.01 B/s (using 57 data points, chi2=0.00)
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | could have reported an average CPU frequency of 3778 MHz (6 samples)
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | ..............................
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | . Timing measurements:
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | . get job = 0 s
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | . initial setup = 2 s
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | . payload setup = 5 s
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | . stage-in = 0 s
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | . payload execution = 3851 s
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | . stage-out = 0 s
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | . log creation = 0 s
[2025-07-27 03:57:41] 2025-07-27 07:57:08,755 | INFO     | ..............................
[2025-07-27 03:57:41] 2025-07-27 07:57:08,817 | INFO     | 
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | job summary report
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | --------------------------------------------------
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | PanDA job id: 6745940200
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | task id: 45758425
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | errors: (none)
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | pilot state: finished 
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | transexitcode: 0
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | exeerrorcode: 0
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | exeerrordiag: 
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | exitcode: 0
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | exitmsg: OK
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | cpuconsumptiontime: 28519 s
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | nevents: 400
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | neventsw: 0
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | pid: 856328
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | pgrp: 856328
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | corecount: 8
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | event service: False
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | sizes: {0: 2397257, 1: 2397456, 4: 2397718, 11: 2397746, 3860: 2423644, 3861: 2432826, 3865: 2432964}
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | --------------------------------------------------
[2025-07-27 03:57:41] 2025-07-27 07:57:08,818 | INFO     | 
[2025-07-27 03:57:41] 2025-07-27 07:57:08,819 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-07-27 03:57:41] 2025-07-27 07:57:08,838 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,839 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,839 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,839 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,839 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,839 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,839 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,839 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,839 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,839 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | job 6745940200 has completed (purged errors)
[2025-07-27 03:57:41] 2025-07-27 07:57:08,840 | INFO     | overall cleanup function is called
[2025-07-27 03:57:41] 2025-07-27 07:57:09,848 | INFO     | --- collectZombieJob: --- 10, [856328]
[2025-07-27 03:57:41] 2025-07-27 07:57:09,848 | INFO     | zombie collector waiting for pid 856328
[2025-07-27 03:57:41] 2025-07-27 07:57:09,848 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 03:57:41] 2025-07-27 07:57:09,848 | INFO     | collected zombie processes
[2025-07-27 03:57:41] 2025-07-27 07:57:09,848 | INFO     | will attempt to kill all subprocesses of pid=856328
[2025-07-27 03:57:41] 2025-07-27 07:57:10,199 | INFO     | process IDs to be killed: [856328] (in reverse order)
[2025-07-27 03:57:41] 2025-07-27 07:57:10,316 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 03:57:41] 2025-07-27 07:57:10,316 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 03:57:41] 2025-07-27 07:57:10,330 | INFO     | did not find any defunct processes belonging to 856328
[2025-07-27 03:57:41] 2025-07-27 07:57:10,341 | INFO     | did not find any defunct processes belonging to 856328
[2025-07-27 03:57:41] 2025-07-27 07:57:10,342 | INFO     | ready for new job
[2025-07-27 03:57:41] 2025-07-27 07:57:10,342 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 03:57:41] 2025-07-27 07:57:10,343 | INFO     | ***************************************
[2025-07-27 03:57:41] 2025-07-27 07:57:10,343 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 03:57:41] 2025-07-27 07:57:10,343 | INFO     | ***************************************
[2025-07-27 03:57:41] 2025-07-27 07:57:10,343 | INFO     | 
[2025-07-27 03:57:41] 2025-07-27 07:57:10,347 | INFO     | architecture information:
[2025-07-27 03:57:41] 2025-07-27 07:57:10,348 | INFO     | executing command: cat /etc/os-release
[2025-07-27 03:57:41] 2025-07-27 07:57:10,366 | INFO     | cat /etc/os-release:
[2025-07-27 03:57:41] NAME="CentOS Linux"
[2025-07-27 03:57:41] VERSION="7 (Core)"
[2025-07-27 03:57:41] ID="centos"
[2025-07-27 03:57:41] ID_LIKE="rhel fedora"
[2025-07-27 03:57:41] VERSION_ID="7"
[2025-07-27 03:57:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 03:57:41] ANSI_COLOR="0;31"
[2025-07-27 03:57:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 03:57:41] HOME_URL="https://www.centos.org/"
[2025-07-27 03:57:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 03:57:41] 
[2025-07-27 03:57:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 03:57:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 03:57:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 03:57:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 03:57:41] 
[2025-07-27 03:57:41] 2025-07-27 07:57:10,366 | INFO     | ***************************************
[2025-07-27 03:57:41] 2025-07-27 07:57:10,867 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-07-27 03:57:41] 2025-07-27 07:57:10,882 | INFO     | sufficient remaining disk space (164363239424 B)
[2025-07-27 03:57:41] 2025-07-27 07:57:10,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 03:57:41] 2025-07-27 07:57:10,882 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 03:57:41] 2025-07-27 07:57:10,882 | INFO     | update_server=False
[2025-07-27 03:57:41] 2025-07-27 07:57:10,882 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 03:57:41] 2025-07-27 07:57:10,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 03:57:41] 2025-07-27 07:57:11,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 03:57:41] 2025-07-27 07:57:11,391 | INFO     | all job control threads have been joined
[2025-07-27 03:57:41] 2025-07-27 07:57:11,496 | INFO     | all data control threads have been joined
[2025-07-27 03:57:41] 2025-07-27 07:57:11,679 | INFO     | all payload control threads have been joined
[2025-07-27 03:57:41] 2025-07-27 07:57:11,744 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 03:57:41] 2025-07-27 07:57:11,744 | INFO     | aborting loop
[2025-07-27 03:57:41] 2025-07-27 07:57:11,888 | INFO     | [job] retrieve thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:12,397 | INFO     | [job] control thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:12,495 | INFO     | [data] copytool_in thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:12,502 | INFO     | [data] control thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:12,654 | INFO     | [payload] failed_post thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:12,685 | INFO     | [payload] control thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:12,713 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:12,750 | INFO     | [job] job monitor thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:12,876 | INFO     | [job] validate thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:12,883 | INFO     | [data] copytool_out thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:13,073 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:13,211 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:13,252 | INFO     | [payload] validate_post thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:13,824 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 03:57:41] 2025-07-27 07:57:14,829 | INFO     | [job] queue monitor thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:15,129 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:21,242 | INFO     | job.realtimelogging is not enabled
[2025-07-27 03:57:41] 2025-07-27 07:57:22,243 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 03:57:41] 2025-07-27 07:57:23,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139743751325504)>', '<ExcThread(monitor, started 139743262140160)>']
[2025-07-27 03:57:41] 2025-07-27 07:57:28,084 | INFO     | all workflow threads have been joined
[2025-07-27 03:57:41] 2025-07-27 07:57:28,084 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 03:57:41] 2025-07-27 07:57:28,084 | INFO     | traces error code: 0
[2025-07-27 03:57:41] 2025-07-27 07:57:28,084 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 03:57:41] 2025-07-27 07:57:41,330 | INFO     | PID=848833 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 03:57:41] 2025-07-27 07:57:41,331 | INFO     | .. there are 16 such processes running
[2025-07-27 03:57:41] 2025-07-27 07:57:41,331 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 03:57:41] 2025-07-27 07:57:41,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 03:57:41] 2025-07-27 07:57:41,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 03:57:41] 2025-07-27 07:57:41,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 03:57:41] 2025-07-27 07:57:41,331 | INFO     | [monitor] control thread has ended
[2025-07-27 03:57:41] 2025-07-27 07:57:41,420 [wrapper] ==== pilot stdout END ====
[2025-07-27 03:57:41] 2025-07-27 07:57:41,422 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 03:57:41] 2025-07-27 07:57:41,424 [wrapper] pilotpid: 848833
[2025-07-27 03:57:41] 2025-07-27 07:57:41,427 [wrapper] Pilot exit status: 0
[2025-07-27 03:57:41] 2025-07-27 07:57:41,437 [wrapper] pandaids: 6745940200
[2025-07-27 03:57:41] 2025-07-27 07:57:41,518 [wrapper] cleanup supervisor_pilot 1184596 848835
[2025-07-27 03:57:41] 2025-07-27 07:57:41,521 [wrapper] Test setup, not cleaning
[2025-07-27 03:57:41] 2025-07-27 07:57:41,524 [wrapper] apfmon messages muted
[2025-07-27 03:57:41] 2025-07-27 07:57:41,526 [wrapper] ==== wrapper stdout END ====
[2025-07-27 03:57:41] 2025-07-27 07:57:41,529 [wrapper] ==== wrapper stderr END ====
[2025-07-27 03:57:41]  *** Error codes and diagnostics ***
[2025-07-27 03:57:41]     "exeErrorCode": 0,
[2025-07-27 03:57:41]     "exeErrorDiag": "",
[2025-07-27 03:57:41]     "pilotErrorCode": 0,
[2025-07-27 03:57:41]     "pilotErrorDiag": "",
[2025-07-27 03:57:41]  *** Listing of results directory ***
[2025-07-27 03:57:41] total 405944
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 21:39 queuedata.json
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 21:40 pilot3.tar.gz
[2025-07-27 03:57:41] -rwx------. 1 boincer umatlas     36292 Jul 26 21:41 runpilot2-wrapper.sh
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas       100 Jul 27 02:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 03:57:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 02:52 run_atlas
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas       105 Jul 27 02:52 job.xml
[2025-07-27 03:57:41] -rw-r--r--. 2 boincer umatlas 238426133 Jul 27 02:52 EVNT.45758423._000005.pool.root.1
[2025-07-27 03:57:41] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 02:52 shared
[2025-07-27 03:57:41] -rw-r--r--. 2 boincer umatlas    542879 Jul 27 02:52 input.tar.gz
[2025-07-27 03:57:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:52 start_atlas.sh
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas         0 Jul 27 02:52 boinc_lockfile
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas      2569 Jul 27 02:52 pandaJob.out
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas    980125 Jul 27 02:52 agis_schedconf.cvmfs.json
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas   1593052 Jul 27 02:52 agis_ddmendpoints.agis.ALL.json
[2025-07-27 03:57:41] drwx------. 4 boincer umatlas      4096 Jul 27 02:52 pilot3
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas      7173 Jul 27 03:47 init_data.xml
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas 172008546 Jul 27 03:56 HITS.45758425._000107.pool.root.1
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas       529 Jul 27 03:56 boinc_task_state.xml
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas        95 Jul 27 03:56 pilot_heartbeat.json
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas      1028 Jul 27 03:57 memory_monitor_summary.json
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas    291058 Jul 27 03:57 log.45758425._000107.job.log.tgz.1
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas      7758 Jul 27 03:57 heartbeat.json
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas        27 Jul 27 03:57 wrapper_checkpoint.txt
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 03:57 boinc_mmap_file
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas       822 Jul 27 03:57 pilotlog.txt
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas    392499 Jul 27 03:57 log.45758425._000107.job.log.1
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas       357 Jul 27 03:57 output.list
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas       620 Jul 27 03:57 runtime_log
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas    706560 Jul 27 03:57 result.tar.gz
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 03:57 runtime_log.err
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas       651 Jul 27 03:57 iAVLDmzY5z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmroTLDmoQhpMm.diag
[2025-07-27 03:57:41] -rw-r--r--. 1 boincer umatlas     21462 Jul 27 03:57 stderr.txt
[2025-07-27 03:57:41] HITS file was successfully produced:
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas 172008546 Jul 27 03:56 shared/HITS.pool.root.1
[2025-07-27 03:57:41]  *** Contents of shared directory: ***
[2025-07-27 03:57:41] total 402068
[2025-07-27 03:57:41] -rw-r--r--. 2 boincer umatlas 238426133 Jul 27 02:52 ATLAS.root_0
[2025-07-27 03:57:41] -rw-r--r--. 2 boincer umatlas    542879 Jul 27 02:52 input.tar.gz
[2025-07-27 03:57:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:52 start_atlas.sh
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas 172008546 Jul 27 03:56 HITS.pool.root.1
[2025-07-27 03:57:41] -rw-------. 1 boincer umatlas    706560 Jul 27 03:57 result.tar.gz
03:57:43 (844331): run_atlas exited; CPU time 28622.261864
03:57:43 (844331): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN