Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:59:31 (958676): wrapper (7.7.26015): starting
02:59:31 (958676): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 02:59:31] Arguments: --nthreads 8
[2025-07-27 02:59:31] Threads: 8
[2025-07-27 02:59:31] Checking for CVMFS
[2025-07-27 02:59:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:59:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:59:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:59:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:59:32] 2.13.1.0 645510 13855 261044 148803 0 196 36909158 40960001 10635 16776704 0 43623929 99.768 41397610 36976 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 02:59:32] CVMFS is ok
[2025-07-27 02:59:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:59:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:59:32] Further information can be found at the LHC@home message board.
[2025-07-27 02:59:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:59:32] Checking for apptainer binary...
[2025-07-27 02:59:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:59:32] Running /usr/bin/apptainer --version
[2025-07-27 02:59:32] apptainer version 1.4.1-1.el9
[2025-07-27 02:59:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:59:32] c-212-5.aglt2.org
[2025-07-27 02:59:32] apptainer works
[2025-07-27 02:59:32] Set ATHENA_PROC_NUMBER=8
[2025-07-27 02:59:32] Set ATHENA_CORE_NUMBER=8
[2025-07-27 02:59:32] Starting ATLAS job with PandaID=6745940167
[2025-07-27 02:59:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:33:32]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:33:32]  mtime=0
[2025-07-27 04:33:32]  protocol_id=None
[2025-07-27 04:33:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 04:33:32]  replicas=None
[2025-07-27 04:33:32]  scope=mc23_13p6TeV
[2025-07-27 04:33:32]  status=None
[2025-07-27 04:33:32]  status_code=0
[2025-07-27 04:33:32]  storage_token=
[2025-07-27 04:33:32]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6745940167/log.45758425._000074.job.log.tgz.1
[2025-07-27 04:33:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/9e/log.45758425._000074.job.log.tgz.1
[2025-07-27 04:33:32]  workdir=None
[2025-07-27 04:33:32] ]
[2025-07-27 04:33:32] 2025-07-27 08:32:53,175 | INFO     | transferring file log.45758425._000074.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6745940167/log.45758425._000074.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:33:32] 2025-07-27 08:32:53,175 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6745940167/log.45758425._000074.job.log.tgz.1 /tmp/boinchome/slots/8/log.45758425._000074.job
[2025-07-27 04:33:32] 2025-07-27 08:32:53,195 | INFO     | adding to output.list: log.45758425._000074.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/9e/log.45758425._000074.job.log.tg
[2025-07-27 04:33:32] 2025-07-27 08:32:53,196 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:33:32] 2025-07-27 08:32:53,196 | INFO     | summary of transferred files:
[2025-07-27 04:33:32] 2025-07-27 08:32:53,196 | INFO     |  -- lfn=log.45758425._000074.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:33:32] 2025-07-27 08:32:53,197 | INFO     | stage-out finished correctly
[2025-07-27 04:33:32] 2025-07-27 08:32:55,413 | INFO     | monitor loop #408: job 0:6745940167 is in state 'finished'
[2025-07-27 04:33:32] 2025-07-27 08:32:55,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:33:32] 2025-07-27 08:32:55,610 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:33:32] 2025-07-27 08:32:55,744 | INFO     | job 6745940167 has state=finished
[2025-07-27 04:33:32] 2025-07-27 08:32:55,745 | INFO     | preparing for final server update for job 6745940167 in state='finished'
[2025-07-27 04:33:32] 2025-07-27 08:32:55,745 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:33:32] 2025-07-27 08:32:55,745 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:33:32] 2025-07-27 08:32:55,745 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:33:32] 2025-07-27 08:32:55,746 | INFO     | job 6745940167 has finished - writing final server update
[2025-07-27 04:33:32] 2025-07-27 08:32:55,746 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:33:32] 2025-07-27 08:32:55,748 | INFO     | executing command: lscpu
[2025-07-27 04:33:32] 2025-07-27 08:32:55,798 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:33:32] 2025-07-27 08:32:57,917 | INFO     | monitor loop #409: job 0:6745940167 is in state 'finished'
[2025-07-27 04:33:32] 2025-07-27 08:32:57,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:33:32] 2025-07-27 08:33:00,420 | INFO     | monitor loop #410: job 0:6745940167 is in state 'finished'
[2025-07-27 04:33:32] 2025-07-27 08:33:00,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:33:32] 2025-07-27 08:33:00,691 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 04:33:32] 2025-07-27 08:33:00,696 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3306.593729166667
[2025-07-27 04:33:32] 2025-07-27 08:33:00,710 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6745940167/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:33:32] 2025-07-27 08:33:00,711 | INFO     | extracted standard info from prmon json
[2025-07-27 04:33:32] 2025-07-27 08:33:00,711 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:33:32] 2025-07-27 08:33:00,711 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:33:32] 2025-07-27 08:33:00,711 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:33:32] 2025-07-27 08:33:00,711 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:33:32] 2025-07-27 08:33:00,712 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:33:32] 2025-07-27 08:33:00,713 | INFO     | sum of square deviations: 183761585.0
[2025-07-27 04:33:32] 2025-07-27 08:33:00,713 | INFO     | sum of deviations: -119233040.00000006
[2025-07-27 04:33:32] 2025-07-27 08:33:00,713 | INFO     | mean x: 1753602455.5
[2025-07-27 04:33:32] 2025-07-27 08:33:00,713 | INFO     | mean y: 2522083.880952381
[2025-07-27 04:33:32] 2025-07-27 08:33:00,713 | INFO     | -- intersect: 1140340696.6270812
[2025-07-27 04:33:32] 2025-07-27 08:33:00,713 | INFO     | intersect: 1140340696.6270812
[2025-07-27 04:33:32] 2025-07-27 08:33:00,713 | INFO     | chi2: 0.0021540980204664073
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | -- intersect: 1140340696.6270812
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | current memory leak: -0.65 B/s (using 84 data points, chi2=0.00)
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | could have reported an average CPU frequency of 3275 MHz (7 samples)
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | ..............................
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | . Timing measurements:
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | . get job = 0 s
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | . initial setup = 2 s
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | . payload setup = 10 s
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | . stage-in = 0 s
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | . payload execution = 5556 s
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | . stage-out = 0 s
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | . log creation = 0 s
[2025-07-27 04:33:32] 2025-07-27 08:33:00,714 | INFO     | ..............................
[2025-07-27 04:33:32] 2025-07-27 08:33:00,769 | INFO     | 
[2025-07-27 04:33:32] 2025-07-27 08:33:00,769 | INFO     | job summary report
[2025-07-27 04:33:32] 2025-07-27 08:33:00,770 | INFO     | --------------------------------------------------
[2025-07-27 04:33:32] 2025-07-27 08:33:00,770 | INFO     | PanDA job id: 6745940167
[2025-07-27 04:33:32] 2025-07-27 08:33:00,770 | INFO     | task id: 45758425
[2025-07-27 04:33:32] 2025-07-27 08:33:00,770 | INFO     | errors: (none)
[2025-07-27 04:33:32] 2025-07-27 08:33:00,770 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:33:32] 2025-07-27 08:33:00,770 | INFO     | pilot state: finished 
[2025-07-27 04:33:32] 2025-07-27 08:33:00,770 | INFO     | transexitcode: 0
[2025-07-27 04:33:32] 2025-07-27 08:33:00,771 | INFO     | exeerrorcode: 0
[2025-07-27 04:33:32] 2025-07-27 08:33:00,771 | INFO     | exeerrordiag: 
[2025-07-27 04:33:32] 2025-07-27 08:33:00,771 | INFO     | exitcode: 0
[2025-07-27 04:33:32] 2025-07-27 08:33:00,771 | INFO     | exitmsg: OK
[2025-07-27 04:33:32] 2025-07-27 08:33:00,771 | INFO     | cpuconsumptiontime: 41066 s
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | nevents: 400
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | neventsw: 0
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | pid: 972285
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | pgrp: 972285
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | corecount: 8
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | event service: False
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | sizes: {0: 2397475, 1: 2397503, 6: 2397765, 11: 2397793, 5570: 2424270, 5571: 2433451, 5574: 2433451, 5579: 2433645}
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | --------------------------------------------------
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | 
[2025-07-27 04:33:32] 2025-07-27 08:33:00,772 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-07-27 04:33:32] 2025-07-27 08:33:00,789 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,789 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,789 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,789 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,789 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,789 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,789 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,789 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | job 6745940167 has completed (purged errors)
[2025-07-27 04:33:32] 2025-07-27 08:33:00,790 | INFO     | overall cleanup function is called
[2025-07-27 04:33:32] 2025-07-27 08:33:01,798 | INFO     | --- collectZombieJob: --- 10, [972285]
[2025-07-27 04:33:32] 2025-07-27 08:33:01,798 | INFO     | zombie collector waiting for pid 972285
[2025-07-27 04:33:32] 2025-07-27 08:33:01,798 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:33:32] 2025-07-27 08:33:01,799 | INFO     | collected zombie processes
[2025-07-27 04:33:32] 2025-07-27 08:33:01,799 | INFO     | will attempt to kill all subprocesses of pid=972285
[2025-07-27 04:33:32] 2025-07-27 08:33:02,080 | INFO     | process IDs to be killed: [972285] (in reverse order)
[2025-07-27 04:33:32] 2025-07-27 08:33:02,175 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:33:32] 2025-07-27 08:33:02,176 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:33:32] 2025-07-27 08:33:02,186 | INFO     | did not find any defunct processes belonging to 972285
[2025-07-27 04:33:32] 2025-07-27 08:33:02,194 | INFO     | did not find any defunct processes belonging to 972285
[2025-07-27 04:33:32] 2025-07-27 08:33:02,194 | INFO     | ready for new job
[2025-07-27 04:33:32] 2025-07-27 08:33:02,194 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:33:32] 2025-07-27 08:33:02,195 | INFO     | ***************************************
[2025-07-27 04:33:32] 2025-07-27 08:33:02,197 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:33:32] 2025-07-27 08:33:02,197 | INFO     | ***************************************
[2025-07-27 04:33:32] 2025-07-27 08:33:02,197 | INFO     | 
[2025-07-27 04:33:32] 2025-07-27 08:33:02,201 | INFO     | architecture information:
[2025-07-27 04:33:32] 2025-07-27 08:33:02,201 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:33:32] 2025-07-27 08:33:02,216 | INFO     | cat /etc/os-release:
[2025-07-27 04:33:32] NAME="CentOS Linux"
[2025-07-27 04:33:32] VERSION="7 (Core)"
[2025-07-27 04:33:32] ID="centos"
[2025-07-27 04:33:32] ID_LIKE="rhel fedora"
[2025-07-27 04:33:32] VERSION_ID="7"
[2025-07-27 04:33:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:33:32] ANSI_COLOR="0;31"
[2025-07-27 04:33:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:33:32] HOME_URL="https://www.centos.org/"
[2025-07-27 04:33:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:33:32] 
[2025-07-27 04:33:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:33:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:33:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:33:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:33:32] 
[2025-07-27 04:33:32] 2025-07-27 08:33:02,216 | INFO     | ***************************************
[2025-07-27 04:33:32] 2025-07-27 08:33:02,719 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-07-27 04:33:32] 2025-07-27 08:33:02,738 | INFO     | sufficient remaining disk space (123101773824 B)
[2025-07-27 04:33:32] 2025-07-27 08:33:02,738 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:33:32] 2025-07-27 08:33:02,739 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:33:32] 2025-07-27 08:33:02,739 | INFO     | update_server=False
[2025-07-27 04:33:32] 2025-07-27 08:33:02,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:33:32] 2025-07-27 08:33:02,739 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:33:32] 2025-07-27 08:33:02,924 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 04:33:32] 2025-07-27 08:33:02,924 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 04:33:32] 2025-07-27 08:33:02,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:33:32] 2025-07-27 08:33:02,924 | INFO     | will abort loop
[2025-07-27 04:33:32] 2025-07-27 08:33:03,000 | INFO     | all data control threads have been joined
[2025-07-27 04:33:32] 2025-07-27 08:33:03,172 | INFO     | all job control threads have been joined
[2025-07-27 04:33:32] 2025-07-27 08:33:03,700 | INFO     | all payload control threads have been joined
[2025-07-27 04:33:32] 2025-07-27 08:33:03,744 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:03,745 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:03,790 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:33:32] 2025-07-27 08:33:03,915 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:03,930 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:03,967 | INFO     | [job] validate thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:04,006 | INFO     | [data] control thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:04,178 | INFO     | [job] control thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:04,343 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:04,534 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:04,667 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:04,706 | INFO     | [payload] control thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:04,731 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:04,779 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:04,877 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:05,795 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:06,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:33:32] 2025-07-27 08:33:10,214 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:33:32] 2025-07-27 08:33:12,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140525782443840)>', '<ExcThread(monitor, started 140525501908736)>']
[2025-07-27 04:33:32] 2025-07-27 08:33:17,229 | INFO     | all workflow threads have been joined
[2025-07-27 04:33:32] 2025-07-27 08:33:17,230 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:33:32] 2025-07-27 08:33:17,230 | INFO     | traces error code: 0
[2025-07-27 04:33:32] 2025-07-27 08:33:17,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:33:32] 2025-07-27 08:33:32,516 | INFO     | PID=964698 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 04:33:32] 2025-07-27 08:33:32,516 | INFO     | .. there are 15 such processes running
[2025-07-27 04:33:32] 2025-07-27 08:33:32,516 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:33:32] 2025-07-27 08:33:32,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:33:32] 2025-07-27 08:33:32,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:33:32] 2025-07-27 08:33:32,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:33:32] 2025-07-27 08:33:32,516 | INFO     | [monitor] control thread has ended
[2025-07-27 04:33:32] 2025-07-27 08:33:32,603 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:33:32] 2025-07-27 08:33:32,612 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:33:32] 2025-07-27 08:33:32,615 [wrapper] pilotpid: 964698
[2025-07-27 04:33:32] 2025-07-27 08:33:32,620 [wrapper] Pilot exit status: 0
[2025-07-27 04:33:32] 2025-07-27 08:33:32,636 [wrapper] pandaids: 6745940167
[2025-07-27 04:33:32] 2025-07-27 08:33:32,727 [wrapper] cleanup supervisor_pilot 1290554 964699
[2025-07-27 04:33:32] 2025-07-27 08:33:32,731 [wrapper] Test setup, not cleaning
[2025-07-27 04:33:32] 2025-07-27 08:33:32,735 [wrapper] apfmon messages muted
[2025-07-27 04:33:32] 2025-07-27 08:33:32,738 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:33:32] 2025-07-27 08:33:32,742 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:33:32]  *** Error codes and diagnostics ***
[2025-07-27 04:33:32]     "exeErrorCode": 0,
[2025-07-27 04:33:32]     "exeErrorDiag": "",
[2025-07-27 04:33:32]     "pilotErrorCode": 0,
[2025-07-27 04:33:32]     "pilotErrorDiag": "",
[2025-07-27 04:33:32]  *** Listing of results directory ***
[2025-07-27 04:33:32] total 402792
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 21:39 queuedata.json
[2025-07-27 04:33:32] -rwx------. 1 boincer umatlas     36292 Jul 26 21:40 runpilot2-wrapper.sh
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 21:40 pilot3.tar.gz
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas       100 Jul 27 02:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:33:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 02:59 run_atlas
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas       105 Jul 27 02:59 job.xml
[2025-07-27 04:33:32] -rw-r--r--. 2 boincer umatlas 235995737 Jul 27 02:59 EVNT.45758423._000003.pool.root.1
[2025-07-27 04:33:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:59 start_atlas.sh
[2025-07-27 04:33:32] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 02:59 shared
[2025-07-27 04:33:32] -rw-r--r--. 2 boincer umatlas    542879 Jul 27 02:59 input.tar.gz
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas         0 Jul 27 02:59 boinc_lockfile
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas      2568 Jul 27 02:59 pandaJob.out
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas    980125 Jul 27 02:59 agis_schedconf.cvmfs.json
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas   1593052 Jul 27 02:59 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:33:32] drwx------. 4 boincer umatlas      4096 Jul 27 02:59 pilot3
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 04:28 init_data.xml
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas 170854828 Jul 27 04:32 HITS.45758425._000074.pool.root.1
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas       529 Jul 27 04:32 boinc_task_state.xml
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas        95 Jul 27 04:32 pilot_heartbeat.json
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas      1025 Jul 27 04:32 memory_monitor_summary.json
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas    328512 Jul 27 04:32 log.45758425._000074.job.log.tgz.1
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas      7746 Jul 27 04:33 heartbeat.json
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 04:33 boinc_mmap_file
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas        27 Jul 27 04:33 wrapper_checkpoint.txt
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas       822 Jul 27 04:33 pilotlog.txt
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas    537663 Jul 27 04:33 log.45758425._000074.job.log.1
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas       357 Jul 27 04:33 output.list
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:33 runtime_log
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas    880640 Jul 27 04:33 result.tar.gz
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 04:33 runtime_log.err
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas       651 Jul 27 04:33 3GcNDm0X5z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeoTLDmPTs5Mo.diag
[2025-07-27 04:33:32] -rw-r--r--. 1 boincer umatlas     21737 Jul 27 04:33 stderr.txt
[2025-07-27 04:33:32] HITS file was successfully produced:
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas 170854828 Jul 27 04:32 shared/HITS.pool.root.1
[2025-07-27 04:33:32]  *** Contents of shared directory: ***
[2025-07-27 04:33:32] total 398736
[2025-07-27 04:33:32] -rw-r--r--. 2 boincer umatlas 235995737 Jul 27 02:59 ATLAS.root_0
[2025-07-27 04:33:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:59 start_atlas.sh
[2025-07-27 04:33:32] -rw-r--r--. 2 boincer umatlas    542879 Jul 27 02:59 input.tar.gz
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas 170854828 Jul 27 04:32 HITS.pool.root.1
[2025-07-27 04:33:32] -rw-------. 1 boincer umatlas    880640 Jul 27 04:33 result.tar.gz
04:33:34 (958676): run_atlas exited; CPU time 41206.170964
04:33:34 (958676): called boinc_finish(0)

</stderr_txt>
]]>

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