Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:42:52 (3246640): wrapper (7.7.26015): starting
02:42:52 (3246640): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 02:42:52] Arguments: --nthreads 8
[2025-07-27 02:42:52] Threads: 8
[2025-07-27 02:42:52] Checking for CVMFS
[2025-07-27 02:42:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:42:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:42:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:42:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:42:52] 2.13.1.0 1187368 12609 277660 148803 3 105 28465046 40960000 8278 16776704 0 80890764 99.667 96725338 31497 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 02:42:52] CVMFS is ok
[2025-07-27 02:42:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:42:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:42:52] Further information can be found at the LHC@home message board.
[2025-07-27 02:42:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:42:52] Checking for apptainer binary...
[2025-07-27 02:42:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:42:52] Running /usr/bin/apptainer --version
[2025-07-27 02:42:52] apptainer version 1.4.1-1.el9
[2025-07-27 02:42:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:42:52] c-212-19.aglt2.org
[2025-07-27 02:42:52] apptainer works
[2025-07-27 02:42:52] Set ATHENA_PROC_NUMBER=8
[2025-07-27 02:42:52] Set ATHENA_CORE_NUMBER=8
[2025-07-27 02:42:52] Starting ATLAS job with PandaID=6745940102
[2025-07-27 02:42:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:12:45]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:12:45]  protocol_id=None
[2025-07-27 04:12:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 04:12:45]  replicas=None
[2025-07-27 04:12:45]  scope=mc23_13p6TeV
[2025-07-27 04:12:45]  status=None
[2025-07-27 04:12:45]  status_code=0
[2025-07-27 04:12:45]  storage_token=
[2025-07-27 04:12:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745940102/log.45758425._000009.job.log.tgz.1
[2025-07-27 04:12:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/6c/log.45758425._000009.job.log.tgz.1
[2025-07-27 04:12:45]  workdir=None
[2025-07-27 04:12:45] ]
[2025-07-27 04:12:45] 2025-07-27 08:12:04,855 | INFO     | transferring file log.45758425._000009.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745940102/log.45758425._000009.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:12:45] 2025-07-27 08:12:04,855 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745940102/log.45758425._000009.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758425._000009.job
[2025-07-27 04:12:45] 2025-07-27 08:12:04,882 | INFO     | adding to output.list: log.45758425._000009.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/6c/log.45758425._000009.job.log.tg
[2025-07-27 04:12:45] 2025-07-27 08:12:04,883 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:12:45] 2025-07-27 08:12:04,883 | INFO     | summary of transferred files:
[2025-07-27 04:12:45] 2025-07-27 08:12:04,883 | INFO     |  -- lfn=log.45758425._000009.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:12:45] 2025-07-27 08:12:04,884 | INFO     | stage-out finished correctly
[2025-07-27 04:12:45] 2025-07-27 08:12:06,017 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:12:45] 2025-07-27 08:12:06,114 | INFO     | job 6745940102 has state=finished
[2025-07-27 04:12:45] 2025-07-27 08:12:06,115 | INFO     | preparing for final server update for job 6745940102 in state='finished'
[2025-07-27 04:12:45] 2025-07-27 08:12:06,196 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 04:12:45] 2025-07-27 08:12:06,196 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:12:45] 2025-07-27 08:12:06,196 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:12:45] 2025-07-27 08:12:06,197 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:12:45] 2025-07-27 08:12:06,197 | INFO     | job 6745940102 has finished - writing final server update
[2025-07-27 04:12:45] 2025-07-27 08:12:06,197 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:12:45] 2025-07-27 08:12:06,198 | INFO     | executing command: lscpu
[2025-07-27 04:12:45] 2025-07-27 08:12:06,257 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:12:45] 2025-07-27 08:12:09,287 | WARNING  | process 3264932 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 04:12:45] 2025-07-27 08:12:09,289 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745940102/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:12:45] 2025-07-27 08:12:09,692 | INFO     | number of running child processes to parent process 3264932: 1
[2025-07-27 04:12:45] 2025-07-27 08:12:09,692 | INFO     | maximum number of monitored processes: 6
[2025-07-27 04:12:45] 2025-07-27 08:12:10,437 | INFO     | PID=3254292 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 04:12:45] 2025-07-27 08:12:10,438 | INFO     | .. there are 18 such processes running
[2025-07-27 04:12:45] 2025-07-27 08:12:11,731 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 04:12:45] 2025-07-27 08:12:11,742 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3296.5866666666657
[2025-07-27 04:12:45] 2025-07-27 08:12:11,754 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745940102/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:12:45] 2025-07-27 08:12:11,755 | INFO     | extracted standard info from prmon json
[2025-07-27 04:12:45] 2025-07-27 08:12:11,755 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:12:45] 2025-07-27 08:12:11,755 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:12:45] 2025-07-27 08:12:11,755 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:12:45] 2025-07-27 08:12:11,756 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | sum of square deviations: 158737860.0
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | sum of deviations: -9961658314.0
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | mean x: 1753601337.5
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | mean y: 2607948.5
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | -- intersect: 110050565903.51083
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | intersect: 110050565903.51083
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | chi2: 0.05649601192756903
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | -- intersect: 110050565903.51083
[2025-07-27 04:12:45] 2025-07-27 08:12:11,757 | INFO     | current memory leak: -62.76 B/s (using 80 data points, chi2=0.06)
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | could have reported an average CPU frequency of 3270 MHz (6 samples)
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | ..............................
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | . Timing measurements:
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | . get job = 0 s
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | . initial setup = 2 s
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | . payload setup = 8 s
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | . stage-in = 0 s
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | . payload execution = 5303 s
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | . stage-out = 0 s
[2025-07-27 04:12:45] 2025-07-27 08:12:11,758 | INFO     | . log creation = 0 s
[2025-07-27 04:12:45] 2025-07-27 08:12:11,759 | INFO     | ..............................
[2025-07-27 04:12:45] 2025-07-27 08:12:12,041 | INFO     | 
[2025-07-27 04:12:45] 2025-07-27 08:12:12,041 | INFO     | job summary report
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | --------------------------------------------------
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | PanDA job id: 6745940102
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | task id: 45758425
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | errors: (none)
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | pilot state: finished 
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | transexitcode: 0
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | exeerrorcode: 0
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | exeerrordiag: 
[2025-07-27 04:12:45] 2025-07-27 08:12:12,042 | INFO     | exitcode: 0
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | exitmsg: OK
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | cpuconsumptiontime: 39918 s
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | nevents: 400
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | neventsw: 0
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | pid: 3264932
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | pgrp: 3264932
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | corecount: 8
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | event service: False
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | sizes: {0: 2397298, 1: 2397497, 7: 2397759, 11: 2397787, 5316: 2424030, 5317: 2433028, 5318: 2433212, 5324: 2433406}
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | --------------------------------------------------
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | 
[2025-07-27 04:12:45] 2025-07-27 08:12:12,043 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 04:12:45] 2025-07-27 08:12:12,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,070 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,070 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,070 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,070 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,070 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,070 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,070 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,070 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | job 6745940102 has completed (purged errors)
[2025-07-27 04:12:45] 2025-07-27 08:12:12,071 | INFO     | overall cleanup function is called
[2025-07-27 04:12:45] 2025-07-27 08:12:13,079 | INFO     | --- collectZombieJob: --- 10, [3264932]
[2025-07-27 04:12:45] 2025-07-27 08:12:13,079 | INFO     | zombie collector waiting for pid 3264932
[2025-07-27 04:12:45] 2025-07-27 08:12:13,079 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:12:45] 2025-07-27 08:12:13,079 | INFO     | collected zombie processes
[2025-07-27 04:12:45] 2025-07-27 08:12:13,079 | INFO     | will attempt to kill all subprocesses of pid=3264932
[2025-07-27 04:12:45] 2025-07-27 08:12:13,493 | INFO     | process IDs to be killed: [3264932] (in reverse order)
[2025-07-27 04:12:45] 2025-07-27 08:12:13,659 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:12:45] 2025-07-27 08:12:13,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:12:45] 2025-07-27 08:12:13,687 | INFO     | did not find any defunct processes belonging to 3264932
[2025-07-27 04:12:45] 2025-07-27 08:12:13,710 | INFO     | did not find any defunct processes belonging to 3264932
[2025-07-27 04:12:45] 2025-07-27 08:12:13,711 | INFO     | ready for new job
[2025-07-27 04:12:45] 2025-07-27 08:12:13,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:12:45] 2025-07-27 08:12:13,713 | INFO     | ***************************************
[2025-07-27 04:12:45] 2025-07-27 08:12:13,713 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:12:45] 2025-07-27 08:12:13,713 | INFO     | ***************************************
[2025-07-27 04:12:45] 2025-07-27 08:12:13,713 | INFO     | 
[2025-07-27 04:12:45] 2025-07-27 08:12:13,719 | INFO     | architecture information:
[2025-07-27 04:12:45] 2025-07-27 08:12:13,720 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:12:45] 2025-07-27 08:12:13,745 | INFO     | cat /etc/os-release:
[2025-07-27 04:12:45] NAME="CentOS Linux"
[2025-07-27 04:12:45] VERSION="7 (Core)"
[2025-07-27 04:12:45] ID="centos"
[2025-07-27 04:12:45] ID_LIKE="rhel fedora"
[2025-07-27 04:12:45] VERSION_ID="7"
[2025-07-27 04:12:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:12:45] ANSI_COLOR="0;31"
[2025-07-27 04:12:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:12:45] HOME_URL="https://www.centos.org/"
[2025-07-27 04:12:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:12:45] 
[2025-07-27 04:12:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:12:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:12:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:12:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:12:45] 
[2025-07-27 04:12:45] 2025-07-27 08:12:13,745 | INFO     | ***************************************
[2025-07-27 04:12:45] 2025-07-27 08:12:14,249 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 04:12:45] 2025-07-27 08:12:14,274 | INFO     | sufficient remaining disk space (128605749248 B)
[2025-07-27 04:12:45] 2025-07-27 08:12:14,275 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:12:45] 2025-07-27 08:12:14,275 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:12:45] 2025-07-27 08:12:14,275 | INFO     | update_server=False
[2025-07-27 04:12:45] 2025-07-27 08:12:14,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:12:45] 2025-07-27 08:12:14,696 | INFO     | all data control threads have been joined
[2025-07-27 04:12:45] 2025-07-27 08:12:14,702 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 04:12:45] 2025-07-27 08:12:14,702 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 04:12:45] 2025-07-27 08:12:14,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:12:45] 2025-07-27 08:12:14,702 | INFO     | will abort loop
[2025-07-27 04:12:45] 2025-07-27 08:12:14,799 | INFO     | all payload control threads have been joined
[2025-07-27 04:12:45] 2025-07-27 08:12:15,280 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:15,461 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:12:45] 2025-07-27 08:12:15,470 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:15,483 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:15,485 | INFO     | all job control threads have been joined
[2025-07-27 04:12:45] 2025-07-27 08:12:15,701 | INFO     | [data] control thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:15,707 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:15,804 | INFO     | [payload] control thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:16,228 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:16,299 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:16,343 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:16,352 | INFO     | [job] validate thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:16,490 | INFO     | [job] control thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:16,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:12:45] 2025-07-27 08:12:16,643 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:16,711 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:16,836 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:12:45] 2025-07-27 08:12:17,466 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:17,841 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:20,603 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:12:45] 2025-07-27 08:12:21,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140662968059712)>', '<ExcThread(monitor, started 140662125098752)>']
[2025-07-27 04:12:45] 2025-07-27 08:12:26,128 | INFO     | all workflow threads have been joined
[2025-07-27 04:12:45] 2025-07-27 08:12:26,128 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:12:45] 2025-07-27 08:12:26,128 | INFO     | traces error code: 0
[2025-07-27 04:12:45] 2025-07-27 08:12:26,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:12:45] 2025-07-27 08:12:45,075 | INFO     | PID=3254292 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 04:12:45] 2025-07-27 08:12:45,076 | INFO     | .. there are 18 such processes running
[2025-07-27 04:12:45] 2025-07-27 08:12:45,077 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:12:45] 2025-07-27 08:12:45,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:12:45] 2025-07-27 08:12:45,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:12:45] 2025-07-27 08:12:45,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:12:45] 2025-07-27 08:12:45,077 | INFO     | [monitor] control thread has ended
[2025-07-27 04:12:45] 2025-07-27 08:12:45,178 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:12:45] 2025-07-27 08:12:45,181 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:12:45] 2025-07-27 08:12:45,184 [wrapper] pilotpid: 3254292
[2025-07-27 04:12:45] 2025-07-27 08:12:45,188 [wrapper] Pilot exit status: 0
[2025-07-27 04:12:45] 2025-07-27 08:12:45,202 [wrapper] pandaids: 6745940102
[2025-07-27 04:12:45] 2025-07-27 08:12:45,316 [wrapper] cleanup supervisor_pilot  181815 3254293
[2025-07-27 04:12:45] 2025-07-27 08:12:45,321 [wrapper] Test setup, not cleaning
[2025-07-27 04:12:45] 2025-07-27 08:12:45,327 [wrapper] apfmon messages muted
[2025-07-27 04:12:45] 2025-07-27 08:12:45,331 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:12:45] 2025-07-27 08:12:45,336 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:12:45]  *** Error codes and diagnostics ***
[2025-07-27 04:12:45]     "exeErrorCode": 0,
[2025-07-27 04:12:45]     "exeErrorDiag": "",
[2025-07-27 04:12:45]     "pilotErrorCode": 0,
[2025-07-27 04:12:45]     "pilotErrorDiag": "",
[2025-07-27 04:12:45]  *** Listing of results directory ***
[2025-07-27 04:12:45] total 406656
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 21:31 pilot3.tar.gz
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 21:37 queuedata.json
[2025-07-27 04:12:45] -rwx------. 1 boincer umatlas     36292 Jul 26 21:38 runpilot2-wrapper.sh
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas       100 Jul 27 02:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:12:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 02:42 run_atlas
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas       105 Jul 27 02:42 job.xml
[2025-07-27 04:12:45] -rw-r--r--. 2 boincer umatlas 236237543 Jul 27 02:42 EVNT.45758423._000001.pool.root.1
[2025-07-27 04:12:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:42 start_atlas.sh
[2025-07-27 04:12:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 02:42 shared
[2025-07-27 04:12:45] -rw-r--r--. 2 boincer umatlas    542882 Jul 27 02:42 input.tar.gz
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas         0 Jul 27 02:42 boinc_lockfile
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas      2565 Jul 27 02:42 pandaJob.out
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas    980125 Jul 27 02:43 agis_schedconf.cvmfs.json
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas   1593052 Jul 27 02:43 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:12:45] drwx------. 4 boincer umatlas      4096 Jul 27 02:43 pilot3
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas      6944 Jul 27 04:02 init_data.xml
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas       529 Jul 27 04:11 boinc_task_state.xml
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas 174658661 Jul 27 04:11 HITS.45758425._000009.pool.root.1
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas      1031 Jul 27 04:12 memory_monitor_summary.json
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas    307847 Jul 27 04:12 log.45758425._000009.job.log.tgz.1
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas      7759 Jul 27 04:12 heartbeat.json
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas        27 Jul 27 04:12 wrapper_checkpoint.txt
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 04:12 boinc_mmap_file
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas       823 Jul 27 04:12 pilotlog.txt
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas        95 Jul 27 04:12 pilot_heartbeat.json
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas    515714 Jul 27 04:12 log.45758425._000009.job.log.1
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas       357 Jul 27 04:12 output.list
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:12 runtime_log
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas    839680 Jul 27 04:12 result.tar.gz
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 04:12 runtime_log.err
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas       652 Jul 27 04:12 dtsLDmsW5z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLoTLDmTGrBdm.diag
[2025-07-27 04:12:45] -rw-r--r--. 1 boincer umatlas     21895 Jul 27 04:12 stderr.txt
[2025-07-27 04:12:45] HITS file was successfully produced:
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas 174658661 Jul 27 04:11 shared/HITS.pool.root.1
[2025-07-27 04:12:45]  *** Contents of shared directory: ***
[2025-07-27 04:12:45] total 402644
[2025-07-27 04:12:45] -rw-r--r--. 2 boincer umatlas 236237543 Jul 27 02:42 ATLAS.root_0
[2025-07-27 04:12:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:42 start_atlas.sh
[2025-07-27 04:12:45] -rw-r--r--. 2 boincer umatlas    542882 Jul 27 02:42 input.tar.gz
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas 174658661 Jul 27 04:11 HITS.pool.root.1
[2025-07-27 04:12:45] -rw-------. 1 boincer umatlas    839680 Jul 27 04:12 result.tar.gz
04:12:46 (3246640): run_atlas exited; CPU time 40139.066884
04:12:46 (3246640): called boinc_finish(0)

</stderr_txt>
]]>

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