Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:44:01 (1221679): wrapper (7.7.26015): starting
02:44:01 (1221679): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 02:44:01] Arguments: --nthreads 8
[2025-07-27 02:44:01] Threads: 8
[2025-07-27 02:44:01] Checking for CVMFS
[2025-07-27 02:44:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:44:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:44:02] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:44:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:44:02] 2.13.1.0 375772 14071 236348 148803 2 196 35502529 40960000 10198 16776704 0 70680303 99.756 69956122 40672 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 02:44:02] CVMFS is ok
[2025-07-27 02:44:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:44:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:44:02] Further information can be found at the LHC@home message board.
[2025-07-27 02:44:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:44:02] Checking for apptainer binary...
[2025-07-27 02:44:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:44:02] Running /usr/bin/apptainer --version
[2025-07-27 02:44:02] apptainer version 1.4.1-1.el9
[2025-07-27 02:44:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:44:02] c-212-1.aglt2.org
[2025-07-27 02:44:02] apptainer works
[2025-07-27 02:44:02] Set ATHENA_PROC_NUMBER=8
[2025-07-27 02:44:02] Set ATHENA_CORE_NUMBER=8
[2025-07-27 02:44:02] Starting ATLAS job with PandaID=6745940088
[2025-07-27 02:44:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:21:01]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:21:01]  protocol_id=None
[2025-07-27 04:21:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 04:21:01]  replicas=None
[2025-07-27 04:21:01]  scope=mc23_13p6TeV
[2025-07-27 04:21:01]  status=None
[2025-07-27 04:21:01]  status_code=0
[2025-07-27 04:21:01]  storage_token=
[2025-07-27 04:21:01]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6745940088/log.45759799._000101.job.log.tgz.1
[2025-07-27 04:21:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/f8/log.45759799._000101.job.log.tgz.1
[2025-07-27 04:21:01]  workdir=None
[2025-07-27 04:21:01] ]
[2025-07-27 04:21:01] 2025-07-27 08:20:23,038 | INFO     | transferring file log.45759799._000101.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6745940088/log.45759799._000101.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:21:01] 2025-07-27 08:20:23,038 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6745940088/log.45759799._000101.job.log.tgz.1 /tmp/boinchome/slots/3/log.45759799._000101.job
[2025-07-27 04:21:01] 2025-07-27 08:20:23,064 | INFO     | adding to output.list: log.45759799._000101.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/f8/log.45759799._000101.job.log.tg
[2025-07-27 04:21:01] 2025-07-27 08:20:23,065 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:21:01] 2025-07-27 08:20:23,065 | INFO     | summary of transferred files:
[2025-07-27 04:21:01] 2025-07-27 08:20:23,065 | INFO     |  -- lfn=log.45759799._000101.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:21:01] 2025-07-27 08:20:23,065 | INFO     | stage-out finished correctly
[2025-07-27 04:21:01] 2025-07-27 08:20:23,860 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:21:01] 2025-07-27 08:20:23,936 | INFO     | job 6745940088 has state=finished
[2025-07-27 04:21:01] 2025-07-27 08:20:23,936 | INFO     | preparing for final server update for job 6745940088 in state='finished'
[2025-07-27 04:21:01] 2025-07-27 08:20:23,937 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:21:01] 2025-07-27 08:20:23,937 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:21:01] 2025-07-27 08:20:23,937 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:21:01] 2025-07-27 08:20:23,937 | INFO     | job 6745940088 has finished - writing final server update
[2025-07-27 04:21:01] 2025-07-27 08:20:23,937 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:21:01] 2025-07-27 08:20:23,938 | INFO     | executing command: lscpu
[2025-07-27 04:21:01] 2025-07-27 08:20:24,003 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:21:01] 2025-07-27 08:20:25,196 | INFO     | PID=1225526 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 04:21:01] 2025-07-27 08:20:25,196 | INFO     | .. there are 12 such processes running
[2025-07-27 04:21:01] 2025-07-27 08:20:28,341 | WARNING  | process 1233951 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 04:21:01] 2025-07-27 08:20:28,341 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745940088/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:21:01] 2025-07-27 08:20:28,717 | INFO     | number of running child processes to parent process 1233951: 1
[2025-07-27 04:21:01] 2025-07-27 08:20:28,717 | INFO     | maximum number of monitored processes: 6
[2025-07-27 04:21:01] 2025-07-27 08:20:28,785 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 04:21:01] 2025-07-27 08:20:28,790 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3293.559333333333
[2025-07-27 04:21:01] 2025-07-27 08:20:28,804 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745940088/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:21:01] 2025-07-27 08:20:28,805 | INFO     | extracted standard info from prmon json
[2025-07-27 04:21:01] 2025-07-27 08:20:28,805 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:21:01] 2025-07-27 08:20:28,805 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:21:01] 2025-07-27 08:20:28,805 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:21:01] 2025-07-27 08:20:28,805 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:21:01] 2025-07-27 08:20:28,807 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:21:01] 2025-07-27 08:20:28,807 | INFO     | sum of square deviations: 211285822.0
[2025-07-27 04:21:01] 2025-07-27 08:20:28,808 | INFO     | sum of deviations: -641620814.0
[2025-07-27 04:21:01] 2025-07-27 08:20:28,808 | INFO     | mean x: 1753601641.5
[2025-07-27 04:21:01] 2025-07-27 08:20:28,808 | INFO     | mean y: 2523894.227272727
[2025-07-27 04:21:01] 2025-07-27 08:20:28,808 | INFO     | -- intersect: 5327762010.067181
[2025-07-27 04:21:01] 2025-07-27 08:20:28,808 | INFO     | intersect: 5327762010.067181
[2025-07-27 04:21:01] 2025-07-27 08:20:28,808 | INFO     | chi2: 0.002235893402000581
[2025-07-27 04:21:01] 2025-07-27 08:20:28,808 | INFO     | -- intersect: 5327762010.067181
[2025-07-27 04:21:01] 2025-07-27 08:20:28,808 | INFO     | current memory leak: -3.04 B/s (using 88 data points, chi2=0.00)
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | could have reported an average CPU frequency of 3286 MHz (7 samples)
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | ..............................
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | . Timing measurements:
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | . get job = 0 s
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | . initial setup = 2 s
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | . payload setup = 7 s
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | . stage-in = 0 s
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | . payload execution = 5741 s
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | . stage-out = 0 s
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | . log creation = 0 s
[2025-07-27 04:21:01] 2025-07-27 08:20:28,809 | INFO     | ..............................
[2025-07-27 04:21:01] 2025-07-27 08:20:28,890 | INFO     | 
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | job summary report
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | --------------------------------------------------
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | PanDA job id: 6745940088
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | task id: 45759799
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | errors: (none)
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | pilot state: finished 
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | transexitcode: 0
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | exeerrorcode: 0
[2025-07-27 04:21:01] 2025-07-27 08:20:28,891 | INFO     | exeerrordiag: 
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | exitcode: 0
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | exitmsg: OK
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | cpuconsumptiontime: 41107 s
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | nevents: 400
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | neventsw: 0
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | pid: 1233951
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | pgrp: 1233951
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | corecount: 8
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | event service: False
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | sizes: {0: 2397295, 1: 2397494, 5: 2397756, 11: 2397812, 5752: 2424488, 5753: 2433486, 5754: 2433670, 5759: 2433864}
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | --------------------------------------------------
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | 
[2025-07-27 04:21:01] 2025-07-27 08:20:28,892 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-27 04:21:01] 2025-07-27 08:20:28,917 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,918 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,918 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,918 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,918 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,918 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,918 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,918 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,918 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,918 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | job 6745940088 has completed (purged errors)
[2025-07-27 04:21:01] 2025-07-27 08:20:28,919 | INFO     | overall cleanup function is called
[2025-07-27 04:21:01] 2025-07-27 08:20:29,927 | INFO     | --- collectZombieJob: --- 10, [1233951]
[2025-07-27 04:21:01] 2025-07-27 08:20:29,928 | INFO     | zombie collector waiting for pid 1233951
[2025-07-27 04:21:01] 2025-07-27 08:20:29,928 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:21:01] 2025-07-27 08:20:29,928 | INFO     | collected zombie processes
[2025-07-27 04:21:01] 2025-07-27 08:20:29,928 | INFO     | will attempt to kill all subprocesses of pid=1233951
[2025-07-27 04:21:01] 2025-07-27 08:20:30,302 | INFO     | process IDs to be killed: [1233951] (in reverse order)
[2025-07-27 04:21:01] 2025-07-27 08:20:30,419 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:21:01] 2025-07-27 08:20:30,419 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:21:01] 2025-07-27 08:20:30,435 | INFO     | did not find any defunct processes belonging to 1233951
[2025-07-27 04:21:01] 2025-07-27 08:20:30,445 | INFO     | did not find any defunct processes belonging to 1233951
[2025-07-27 04:21:01] 2025-07-27 08:20:30,445 | INFO     | ready for new job
[2025-07-27 04:21:01] 2025-07-27 08:20:30,445 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:21:01] 2025-07-27 08:20:30,447 | INFO     | ***************************************
[2025-07-27 04:21:01] 2025-07-27 08:20:30,447 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:21:01] 2025-07-27 08:20:30,447 | INFO     | ***************************************
[2025-07-27 04:21:01] 2025-07-27 08:20:30,447 | INFO     | 
[2025-07-27 04:21:01] 2025-07-27 08:20:30,452 | INFO     | architecture information:
[2025-07-27 04:21:01] 2025-07-27 08:20:30,452 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:21:01] 2025-07-27 08:20:30,471 | INFO     | cat /etc/os-release:
[2025-07-27 04:21:01] NAME="CentOS Linux"
[2025-07-27 04:21:01] VERSION="7 (Core)"
[2025-07-27 04:21:01] ID="centos"
[2025-07-27 04:21:01] ID_LIKE="rhel fedora"
[2025-07-27 04:21:01] VERSION_ID="7"
[2025-07-27 04:21:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:21:01] ANSI_COLOR="0;31"
[2025-07-27 04:21:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:21:01] HOME_URL="https://www.centos.org/"
[2025-07-27 04:21:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:21:01] 
[2025-07-27 04:21:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:21:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:21:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:21:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:21:01] 
[2025-07-27 04:21:01] 2025-07-27 08:20:30,471 | INFO     | ***************************************
[2025-07-27 04:21:01] 2025-07-27 08:20:30,974 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-27 04:21:01] 2025-07-27 08:20:30,997 | INFO     | sufficient remaining disk space (123270594560 B)
[2025-07-27 04:21:01] 2025-07-27 08:20:30,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:21:01] 2025-07-27 08:20:30,998 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:21:01] 2025-07-27 08:20:30,998 | INFO     | update_server=False
[2025-07-27 04:21:01] 2025-07-27 08:20:30,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:21:01] 2025-07-27 08:20:31,157 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:21:01] 2025-07-27 08:20:31,222 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 04:21:01] 2025-07-27 08:20:31,223 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 04:21:01] 2025-07-27 08:20:31,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:21:01] 2025-07-27 08:20:31,223 | INFO     | will abort loop
[2025-07-27 04:21:01] 2025-07-27 08:20:31,490 | INFO     | all payload control threads have been joined
[2025-07-27 04:21:01] 2025-07-27 08:20:31,588 | INFO     | all data control threads have been joined
[2025-07-27 04:21:01] 2025-07-27 08:20:32,003 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:32,093 | INFO     | all job control threads have been joined
[2025-07-27 04:21:01] 2025-07-27 08:20:32,229 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:32,303 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:32,417 | INFO     | [job] validate thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:32,494 | INFO     | [payload] control thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:32,502 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:32,594 | INFO     | [data] control thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:32,971 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:32,986 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:33,099 | INFO     | [job] control thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:33,163 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:33,327 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:33,421 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:33,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:21:01] 2025-07-27 08:20:34,447 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:21:01] 2025-07-27 08:20:34,906 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:38,453 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:41,180 | INFO     | job.realtimelogging is not enabled
[2025-07-27 04:21:01] 2025-07-27 08:20:42,186 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:21:01] 2025-07-27 08:20:42,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183657871168)>', '<ExcThread(monitor, started 140183001347840)>']
[2025-07-27 04:21:01] 2025-07-27 08:20:47,362 | INFO     | all workflow threads have been joined
[2025-07-27 04:21:01] 2025-07-27 08:20:47,363 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:21:01] 2025-07-27 08:20:47,363 | INFO     | traces error code: 0
[2025-07-27 04:21:01] 2025-07-27 08:20:47,363 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:21:01] 2025-07-27 08:21:01,580 | INFO     | PID=1225526 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 04:21:01] 2025-07-27 08:21:01,581 | INFO     | .. there are 13 such processes running
[2025-07-27 04:21:01] 2025-07-27 08:21:01,581 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:21:01] 2025-07-27 08:21:01,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:21:01] 2025-07-27 08:21:01,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:21:01] 2025-07-27 08:21:01,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:21:01] 2025-07-27 08:21:01,582 | INFO     | [monitor] control thread has ended
[2025-07-27 04:21:01] 2025-07-27 08:21:01,682 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:21:01] 2025-07-27 08:21:01,686 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:21:01] 2025-07-27 08:21:01,689 [wrapper] pilotpid: 1225526
[2025-07-27 04:21:01] 2025-07-27 08:21:01,693 [wrapper] Pilot exit status: 0
[2025-07-27 04:21:01] 2025-07-27 08:21:01,707 [wrapper] pandaids: 6745940088
[2025-07-27 04:21:01] 2025-07-27 08:21:01,791 [wrapper] cleanup supervisor_pilot 1585608 1225527
[2025-07-27 04:21:01] 2025-07-27 08:21:01,794 [wrapper] Test setup, not cleaning
[2025-07-27 04:21:01] 2025-07-27 08:21:01,798 [wrapper] apfmon messages muted
[2025-07-27 04:21:01] 2025-07-27 08:21:01,802 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:21:01] 2025-07-27 08:21:01,805 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:21:01]  *** Error codes and diagnostics ***
[2025-07-27 04:21:01]     "exeErrorCode": 0,
[2025-07-27 04:21:01]     "exeErrorDiag": "",
[2025-07-27 04:21:01]     "pilotErrorCode": 0,
[2025-07-27 04:21:01]     "pilotErrorDiag": "",
[2025-07-27 04:21:01]  *** Listing of results directory ***
[2025-07-27 04:21:01] total 408876
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 21:31 pilot3.tar.gz
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 21:35 queuedata.json
[2025-07-27 04:21:01] -rwx------. 1 boincer umatlas     36292 Jul 26 21:35 runpilot2-wrapper.sh
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas       100 Jul 27 02:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:21:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 02:44 run_atlas
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas       105 Jul 27 02:44 job.xml
[2025-07-27 04:21:01] -rw-r--r--. 2 boincer umatlas 240496695 Jul 27 02:44 EVNT.45759797._000005.pool.root.1
[2025-07-27 04:21:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:44 start_atlas.sh
[2025-07-27 04:21:01] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 02:44 shared
[2025-07-27 04:21:01] -rw-r--r--. 2 boincer umatlas    542868 Jul 27 02:44 input.tar.gz
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas         0 Jul 27 02:44 boinc_lockfile
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas      2560 Jul 27 02:44 pandaJob.out
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas    980125 Jul 27 02:44 agis_schedconf.cvmfs.json
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas   1593052 Jul 27 02:44 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:21:01] drwx------. 4 boincer umatlas      4096 Jul 27 02:44 pilot3
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 04:11 init_data.xml
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas 172601710 Jul 27 04:19 HITS.45759799._000101.pool.root.1
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas       529 Jul 27 04:19 boinc_task_state.xml
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas      1026 Jul 27 04:20 memory_monitor_summary.json
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas    301770 Jul 27 04:20 log.45759799._000101.job.log.tgz.1
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas        95 Jul 27 04:20 pilot_heartbeat.json
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas      7749 Jul 27 04:20 heartbeat.json
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 04:21 boinc_mmap_file
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas        27 Jul 27 04:21 wrapper_checkpoint.txt
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas       823 Jul 27 04:21 pilotlog.txt
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas    554378 Jul 27 04:21 log.45759799._000101.job.log.1
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas       357 Jul 27 04:21 output.list
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:21 runtime_log
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas    870400 Jul 27 04:21 result.tar.gz
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 04:21 runtime_log.err
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas       651 Jul 27 04:21 N6uKDm0T5z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmoj1KDmnwwKLm.diag
[2025-07-27 04:21:01] -rw-r--r--. 1 boincer umatlas     21870 Jul 27 04:21 stderr.txt
[2025-07-27 04:21:01] HITS file was successfully produced:
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas 172601710 Jul 27 04:19 shared/HITS.pool.root.1
[2025-07-27 04:21:01]  *** Contents of shared directory: ***
[2025-07-27 04:21:01] total 404832
[2025-07-27 04:21:01] -rw-r--r--. 2 boincer umatlas 240496695 Jul 27 02:44 ATLAS.root_0
[2025-07-27 04:21:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:44 start_atlas.sh
[2025-07-27 04:21:01] -rw-r--r--. 2 boincer umatlas    542868 Jul 27 02:44 input.tar.gz
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas 172601710 Jul 27 04:19 HITS.pool.root.1
[2025-07-27 04:21:01] -rw-------. 1 boincer umatlas    870400 Jul 27 04:21 result.tar.gz
04:21:03 (1221679): run_atlas exited; CPU time 41251.001877
04:21:03 (1221679): called boinc_finish(0)

</stderr_txt>
]]>

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