Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:57:34 (974833): wrapper (7.7.26015): starting
03:57:34 (974833): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:57:34] Arguments: --nthreads 12
[2025-07-27 03:57:34] Threads: 12
[2025-07-27 03:57:34] Checking for CVMFS
[2025-07-27 03:57:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:57:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:57:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:57:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:57:35] 2.12.6.0 2624825 18093 329196 148804 2 327 27290653 40960000 8581 16776704 0 56724009 99.790 50531371 31443 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 03:57:35] CVMFS is ok
[2025-07-27 03:57:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:57:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:57:35] Further information can be found at the LHC@home message board.
[2025-07-27 03:57:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:57:35] Checking for apptainer binary...
[2025-07-27 03:57:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:57:35] Running /usr/bin/apptainer --version
[2025-07-27 03:57:35] apptainer version 1.4.1-1.el9
[2025-07-27 03:57:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:57:35] c6-8-12-1.aglt2.org
[2025-07-27 03:57:35] apptainer works
[2025-07-27 03:57:35] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:57:35] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:57:35] Starting ATLAS job with PandaID=6745940008
[2025-07-27 03:57:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:27:52]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:27:52]  replicas=None
[2025-07-27 05:27:52]  scope=mc23_13p6TeV
[2025-07-27 05:27:52]  status=None
[2025-07-27 05:27:52]  status_code=0
[2025-07-27 05:27:52]  storage_token=
[2025-07-27 05:27:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745940008/log.45759799._000021.job.log.tgz.1
[2025-07-27 05:27:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/53/log.45759799._000021.job.log.tgz.1
[2025-07-27 05:27:52]  workdir=None
[2025-07-27 05:27:52] ]
[2025-07-27 05:27:52] 2025-07-27 09:27:08,320 | INFO     | transferring file log.45759799._000021.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745940008/log.45759799._000021.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 05:27:52] 2025-07-27 09:27:08,321 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745940008/log.45759799._000021.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759799._000021.job
[2025-07-27 05:27:52] 2025-07-27 09:27:08,346 | INFO     | adding to output.list: log.45759799._000021.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/53/log.45759799._000021.job.log.tg
[2025-07-27 05:27:52] 2025-07-27 09:27:08,347 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 05:27:52] 2025-07-27 09:27:08,348 | INFO     | summary of transferred files:
[2025-07-27 05:27:52] 2025-07-27 09:27:08,348 | INFO     |  -- lfn=log.45759799._000021.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 05:27:52] 2025-07-27 09:27:08,348 | INFO     | stage-out finished correctly
[2025-07-27 05:27:52] 2025-07-27 09:27:09,205 | INFO     | monitor loop #388: job 0:6745940008 is in state 'finished'
[2025-07-27 05:27:52] 2025-07-27 09:27:09,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:27:52] 2025-07-27 09:27:11,711 | INFO     | monitor loop #389: job 0:6745940008 is in state 'finished'
[2025-07-27 05:27:52] 2025-07-27 09:27:11,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:27:52] 2025-07-27 09:27:11,787 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 05:27:52] 2025-07-27 09:27:13,134 | INFO     | job 6745940008 has state=finished
[2025-07-27 05:27:52] 2025-07-27 09:27:13,134 | INFO     | preparing for final server update for job 6745940008 in state='finished'
[2025-07-27 05:27:52] 2025-07-27 09:27:13,135 | INFO     | this job has now completed (state=finished)
[2025-07-27 05:27:52] 2025-07-27 09:27:13,135 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 05:27:52] 2025-07-27 09:27:13,135 | INFO     | log transfer has been attempted: DONE
[2025-07-27 05:27:52] 2025-07-27 09:27:13,135 | INFO     | job 6745940008 has finished - writing final server update
[2025-07-27 05:27:52] 2025-07-27 09:27:13,136 | INFO     | total number of processed events: 400 (read)
[2025-07-27 05:27:52] 2025-07-27 09:27:13,137 | INFO     | executing command: lscpu
[2025-07-27 05:27:52] 2025-07-27 09:27:13,212 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 05:27:52] 2025-07-27 09:27:14,214 | INFO     | monitor loop #390: job 0:6745940008 is in state 'finished'
[2025-07-27 05:27:52] 2025-07-27 09:27:14,215 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:27:52] 2025-07-27 09:27:16,719 | INFO     | monitor loop #391: job 0:6745940008 is in state 'finished'
[2025-07-27 05:27:52] 2025-07-27 09:27:16,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:27:52] 2025-07-27 09:27:19,080 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 05:27:52] 2025-07-27 09:27:19,101 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2639.013214285715
[2025-07-27 05:27:52] 2025-07-27 09:27:19,109 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745940008/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:27:52] 2025-07-27 09:27:19,110 | INFO     | extracted standard info from prmon json
[2025-07-27 05:27:52] 2025-07-27 09:27:19,110 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:27:52] 2025-07-27 09:27:19,110 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:27:52] 2025-07-27 09:27:19,110 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:27:52] 2025-07-27 09:27:19,110 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:27:52] 2025-07-27 09:27:19,112 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:27:52] 2025-07-27 09:27:19,113 | INFO     | sum of square deviations: 164765880.0
[2025-07-27 05:27:52] 2025-07-27 09:27:19,113 | INFO     | sum of deviations: -5238140455.0
[2025-07-27 05:27:52] 2025-07-27 09:27:19,113 | INFO     | mean x: 1753605839.0
[2025-07-27 05:27:52] 2025-07-27 09:27:19,113 | INFO     | mean y: 2416081.2716049384
[2025-07-27 05:27:52] 2025-07-27 09:27:19,113 | INFO     | -- intersect: 55752026907.19089
[2025-07-27 05:27:52] 2025-07-27 09:27:19,113 | INFO     | intersect: 55752026907.19089
[2025-07-27 05:27:52] 2025-07-27 09:27:19,114 | INFO     | chi2: 0.22325680843924142
[2025-07-27 05:27:52] 2025-07-27 09:27:19,114 | INFO     | -- intersect: 55752026907.19089
[2025-07-27 05:27:52] 2025-07-27 09:27:19,114 | INFO     | current memory leak: -31.79 B/s (using 81 data points, chi2=0.22)
[2025-07-27 05:27:52] 2025-07-27 09:27:19,114 | INFO     | could have reported an average CPU frequency of 2722 MHz (6 samples)
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | ..............................
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | . Timing measurements:
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | . get job = 0 s
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | . initial setup = 2 s
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | . payload setup = 6 s
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | . stage-in = 0 s
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | . payload execution = 5334 s
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | . stage-out = 0 s
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | . log creation = 0 s
[2025-07-27 05:27:52] 2025-07-27 09:27:19,115 | INFO     | ..............................
[2025-07-27 05:27:52] 2025-07-27 09:27:19,338 | INFO     | 
[2025-07-27 05:27:52] 2025-07-27 09:27:19,339 | INFO     | job summary report
[2025-07-27 05:27:52] 2025-07-27 09:27:19,339 | INFO     | --------------------------------------------------
[2025-07-27 05:27:52] 2025-07-27 09:27:19,339 | INFO     | PanDA job id: 6745940008
[2025-07-27 05:27:52] 2025-07-27 09:27:19,339 | INFO     | task id: 45759799
[2025-07-27 05:27:52] 2025-07-27 09:27:19,339 | INFO     | errors: (none)
[2025-07-27 05:27:52] 2025-07-27 09:27:19,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:27:52] 2025-07-27 09:27:19,339 | INFO     | pilot state: finished 
[2025-07-27 05:27:52] 2025-07-27 09:27:19,339 | INFO     | transexitcode: 0
[2025-07-27 05:27:52] 2025-07-27 09:27:19,339 | INFO     | exeerrorcode: 0
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | exeerrordiag: 
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | exitcode: 0
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | exitmsg: OK
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | cpuconsumptiontime: 55059 s
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | nevents: 400
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | neventsw: 0
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | pid: 985752
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | pgrp: 985752
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | corecount: 12
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | event service: False
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | sizes: {0: 2397288, 1: 2397487, 5: 2397749, 12: 2397805, 5344: 2424367, 5345: 2433365, 5349: 2433549, 5356: 2433743}
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | --------------------------------------------------
[2025-07-27 05:27:52] 2025-07-27 09:27:19,340 | INFO     | 
[2025-07-27 05:27:52] 2025-07-27 09:27:19,341 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 05:27:52] 2025-07-27 09:27:19,367 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,367 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,369 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:27:52] 2025-07-27 09:27:19,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,369 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:27:52] 2025-07-27 09:27:19,369 | INFO     | job 6745940008 has completed (purged errors)
[2025-07-27 05:27:52] 2025-07-27 09:27:19,369 | INFO     | overall cleanup function is called
[2025-07-27 05:27:52] 2025-07-27 09:27:20,377 | INFO     | --- collectZombieJob: --- 10, [985752]
[2025-07-27 05:27:52] 2025-07-27 09:27:20,378 | INFO     | zombie collector waiting for pid 985752
[2025-07-27 05:27:52] 2025-07-27 09:27:20,378 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:27:52] 2025-07-27 09:27:20,378 | INFO     | collected zombie processes
[2025-07-27 05:27:52] 2025-07-27 09:27:20,378 | INFO     | will attempt to kill all subprocesses of pid=985752
[2025-07-27 05:27:52] 2025-07-27 09:27:20,720 | INFO     | process IDs to be killed: [985752] (in reverse order)
[2025-07-27 05:27:52] 2025-07-27 09:27:20,840 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:27:52] 2025-07-27 09:27:20,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:27:52] 2025-07-27 09:27:20,856 | INFO     | did not find any defunct processes belonging to 985752
[2025-07-27 05:27:52] 2025-07-27 09:27:20,870 | INFO     | did not find any defunct processes belonging to 985752
[2025-07-27 05:27:52] 2025-07-27 09:27:20,871 | INFO     | ready for new job
[2025-07-27 05:27:52] 2025-07-27 09:27:20,871 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:27:52] 2025-07-27 09:27:20,874 | INFO     | ***************************************
[2025-07-27 05:27:52] 2025-07-27 09:27:20,874 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:27:52] 2025-07-27 09:27:20,874 | INFO     | ***************************************
[2025-07-27 05:27:52] 2025-07-27 09:27:20,874 | INFO     | 
[2025-07-27 05:27:52] 2025-07-27 09:27:20,892 | INFO     | architecture information:
[2025-07-27 05:27:52] 2025-07-27 09:27:20,892 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:27:52] 2025-07-27 09:27:20,918 | INFO     | cat /etc/os-release:
[2025-07-27 05:27:52] NAME="CentOS Linux"
[2025-07-27 05:27:52] VERSION="7 (Core)"
[2025-07-27 05:27:52] ID="centos"
[2025-07-27 05:27:52] ID_LIKE="rhel fedora"
[2025-07-27 05:27:52] VERSION_ID="7"
[2025-07-27 05:27:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:27:52] ANSI_COLOR="0;31"
[2025-07-27 05:27:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:27:52] HOME_URL="https://www.centos.org/"
[2025-07-27 05:27:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:27:52] 
[2025-07-27 05:27:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:27:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:27:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:27:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:27:52] 
[2025-07-27 05:27:52] 2025-07-27 09:27:20,918 | INFO     | ***************************************
[2025-07-27 05:27:52] 2025-07-27 09:27:21,421 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 05:27:52] 2025-07-27 09:27:21,440 | INFO     | sufficient remaining disk space (58589184000 B)
[2025-07-27 05:27:52] 2025-07-27 09:27:21,441 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:27:52] 2025-07-27 09:27:21,441 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:27:52] 2025-07-27 09:27:21,441 | INFO     | update_server=False
[2025-07-27 05:27:52] 2025-07-27 09:27:21,441 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:27:52] 2025-07-27 09:27:21,483 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:27:52] 2025-07-27 09:27:21,728 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 05:27:52] 2025-07-27 09:27:21,728 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 05:27:52] 2025-07-27 09:27:21,728 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:27:52] 2025-07-27 09:27:21,729 | INFO     | will abort loop
[2025-07-27 05:27:52] 2025-07-27 09:27:21,910 | INFO     | all job control threads have been joined
[2025-07-27 05:27:52] 2025-07-27 09:27:22,006 | INFO     | all payload control threads have been joined
[2025-07-27 05:27:52] 2025-07-27 09:27:22,108 | INFO     | all data control threads have been joined
[2025-07-27 05:27:52] 2025-07-27 09:27:22,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:27:52] 2025-07-27 09:27:22,446 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:22,470 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:22,660 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:22,734 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:22,736 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:22,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:22,916 | INFO     | [job] control thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:23,012 | INFO     | [payload] control thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:23,113 | INFO     | [data] control thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:23,250 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:23,371 | INFO     | [job] validate thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:23,407 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:23,488 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:23,724 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:24,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:27:52] 2025-07-27 09:27:25,209 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:26,426 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:27:52] 2025-07-27 09:27:28,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139662051014464)>', '<ExcThread(monitor, started 139661129283328)>']
[2025-07-27 05:27:52] 2025-07-27 09:27:33,057 | INFO     | all workflow threads have been joined
[2025-07-27 05:27:52] 2025-07-27 09:27:33,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:27:52] 2025-07-27 09:27:33,058 | INFO     | traces error code: 0
[2025-07-27 05:27:52] 2025-07-27 09:27:33,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:27:52] 2025-07-27 09:27:43,900 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-07-27 05:27:52] 2025-07-27 09:27:51,737 | INFO     | PID=978574 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 05:27:52] 2025-07-27 09:27:51,737 | INFO     | .. there are 11 such processes running
[2025-07-27 05:27:52] 2025-07-27 09:27:51,739 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:27:52] 2025-07-27 09:27:51,739 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:27:52] 2025-07-27 09:27:51,739 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:27:52] 2025-07-27 09:27:51,739 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:27:52] 2025-07-27 09:27:51,739 | INFO     | [monitor] control thread has ended
[2025-07-27 05:27:52] 2025-07-27 09:27:51,986 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:27:52] 2025-07-27 09:27:51,992 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:27:52] 2025-07-27 09:27:51,996 [wrapper] pilotpid: 978574
[2025-07-27 05:27:52] 2025-07-27 09:27:52,000 [wrapper] Pilot exit status: 0
[2025-07-27 05:27:52] 2025-07-27 09:27:52,017 [wrapper] pandaids: 6745940008
[2025-07-27 05:27:52] 2025-07-27 09:27:52,091 [wrapper] cleanup supervisor_pilot 1303329 978575
[2025-07-27 05:27:52] 2025-07-27 09:27:52,097 [wrapper] Test setup, not cleaning
[2025-07-27 05:27:52] 2025-07-27 09:27:52,101 [wrapper] apfmon messages muted
[2025-07-27 05:27:52] 2025-07-27 09:27:52,106 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:27:52] 2025-07-27 09:27:52,110 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:27:52]  *** Error codes and diagnostics ***
[2025-07-27 05:27:52]     "exeErrorCode": 0,
[2025-07-27 05:27:52]     "exeErrorDiag": "",
[2025-07-27 05:27:52]     "pilotErrorCode": 0,
[2025-07-27 05:27:52]     "pilotErrorDiag": "",
[2025-07-27 05:27:52]  *** Listing of results directory ***
[2025-07-27 05:27:52] total 399276
[2025-07-27 05:27:52] -rwx------. 1 boincer umatlas     36292 Jul 26 21:23 runpilot2-wrapper.sh
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 21:23 queuedata.json
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 21:23 pilot3.tar.gz
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas       100 Jul 27 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:27:52] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 03:57 run_atlas
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas       105 Jul 27 03:57 job.xml
[2025-07-27 05:27:52] -rw-r--r--. 2 boincer umatlas 237905899 Jul 27 03:57 EVNT.45759797._000001.pool.root.1
[2025-07-27 05:27:52] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:57 start_atlas.sh
[2025-07-27 05:27:52] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 03:57 shared
[2025-07-27 05:27:52] -rw-r--r--. 2 boincer umatlas    542865 Jul 27 03:57 input.tar.gz
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas         0 Jul 27 03:57 boinc_lockfile
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas      2553 Jul 27 03:57 pandaJob.out
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas    980125 Jul 27 03:57 agis_schedconf.cvmfs.json
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas   1593052 Jul 27 03:57 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:27:52] drwx------. 4 boincer umatlas      4096 Jul 27 03:57 pilot3
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 05:18 init_data.xml
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas 165277955 Jul 27 05:26 HITS.45759799._000021.pool.root.1
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas       529 Jul 27 05:26 boinc_task_state.xml
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas      1039 Jul 27 05:27 memory_monitor_summary.json
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas    382232 Jul 27 05:27 log.45759799._000021.job.log.tgz.1
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas      7810 Jul 27 05:27 heartbeat.json
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 05:27 boinc_mmap_file
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas        95 Jul 27 05:27 pilot_heartbeat.json
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas       822 Jul 27 05:27 pilotlog.txt
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas    517277 Jul 27 05:27 log.45759799._000021.job.log.1
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas       357 Jul 27 05:27 output.list
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas        27 Jul 27 05:27 wrapper_checkpoint.txt
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas       620 Jul 27 05:27 runtime_log
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas    921600 Jul 27 05:27 result.tar.gz
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 05:27 runtime_log.err
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas       655 Jul 27 05:27 j2ZMDmuH5z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbnTLDm3FMtKm.diag
[2025-07-27 05:27:52] -rw-r--r--. 1 boincer umatlas     21869 Jul 27 05:27 stderr.txt
[2025-07-27 05:27:52] HITS file was successfully produced:
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas 165277955 Jul 27 05:26 shared/HITS.pool.root.1
[2025-07-27 05:27:52]  *** Contents of shared directory: ***
[2025-07-27 05:27:52] total 395188
[2025-07-27 05:27:52] -rw-r--r--. 2 boincer umatlas 237905899 Jul 27 03:57 ATLAS.root_0
[2025-07-27 05:27:52] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:57 start_atlas.sh
[2025-07-27 05:27:52] -rw-r--r--. 2 boincer umatlas    542865 Jul 27 03:57 input.tar.gz
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas 165277955 Jul 27 05:26 HITS.pool.root.1
[2025-07-27 05:27:52] -rw-------. 1 boincer umatlas    921600 Jul 27 05:27 result.tar.gz
05:27:54 (974833): run_atlas exited; CPU time 55129.774570
05:27:54 (974833): called boinc_finish(0)

</stderr_txt>
]]>

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