Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:29:30 (4163109): wrapper (7.7.26015): starting
02:29:30 (4163109): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 02:29:30] Arguments: --nthreads 8
[2025-07-27 02:29:30] Threads: 8
[2025-07-27 02:29:30] Checking for CVMFS
[2025-07-27 02:29:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:29:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:29:30] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:29:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:29:30] 2.13.1.0 3153527 8013 137792 148803 3 57 22295411 40960000 12841 16776704 0 108576916 99.999 287674 59058 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 02:29:30] CVMFS is ok
[2025-07-27 02:29:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:29:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:29:31] Further information can be found at the LHC@home message board.
[2025-07-27 02:29:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:29:31] Checking for apptainer binary...
[2025-07-27 02:29:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:29:31] Running /usr/bin/apptainer --version
[2025-07-27 02:29:31] apptainer version 1.4.1-1.el9
[2025-07-27 02:29:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:29:31] c-208-37.aglt2.org
[2025-07-27 02:29:31] apptainer works
[2025-07-27 02:29:31] Set ATHENA_PROC_NUMBER=8
[2025-07-27 02:29:31] Set ATHENA_CORE_NUMBER=8
[2025-07-27 02:29:31] Starting ATLAS job with PandaID=6745939225
[2025-07-27 02:29:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 03:29:54]  *** The last 200 lines of the pilot log: ***
[2025-07-27 03:29:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 03:29:54]  replicas=None
[2025-07-27 03:29:54]  scope=mc23_13p6TeV
[2025-07-27 03:29:54]  status=None
[2025-07-27 03:29:54]  status_code=0
[2025-07-27 03:29:54]  storage_token=
[2025-07-27 03:29:54]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6745939225/log.45758350._000030.job.log.tgz.1
[2025-07-27 03:29:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/a1/log.45758350._000030.job.log.tgz.1
[2025-07-27 03:29:54]  workdir=None
[2025-07-27 03:29:54] ]
[2025-07-27 03:29:54] 2025-07-27 07:29:15,263 | INFO     | transferring file log.45758350._000030.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6745939225/log.45758350._000030.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 03:29:54] 2025-07-27 07:29:15,263 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6745939225/log.45758350._000030.job.log.tgz.1 /tmp/boinchome/slots/5/log.45758350._000030.job
[2025-07-27 03:29:54] 2025-07-27 07:29:15,283 | INFO     | adding to output.list: log.45758350._000030.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/a1/log.45758350._000030.job.log.tg
[2025-07-27 03:29:54] 2025-07-27 07:29:15,284 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 03:29:54] 2025-07-27 07:29:15,284 | INFO     | summary of transferred files:
[2025-07-27 03:29:54] 2025-07-27 07:29:15,284 | INFO     |  -- lfn=log.45758350._000030.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 03:29:54] 2025-07-27 07:29:15,285 | INFO     | stage-out finished correctly
[2025-07-27 03:29:54] 2025-07-27 07:29:17,368 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 03:29:54] 2025-07-27 07:29:17,842 | INFO     | PID=4166696 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 03:29:54] 2025-07-27 07:29:17,842 | INFO     | .. there are 15 such processes running
[2025-07-27 03:29:54] 2025-07-27 07:29:18,945 | INFO     | job 6745939225 has state=finished
[2025-07-27 03:29:54] 2025-07-27 07:29:18,945 | INFO     | preparing for final server update for job 6745939225 in state='finished'
[2025-07-27 03:29:54] 2025-07-27 07:29:18,946 | INFO     | this job has now completed (state=finished)
[2025-07-27 03:29:54] 2025-07-27 07:29:18,946 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 03:29:54] 2025-07-27 07:29:18,946 | INFO     | log transfer has been attempted: DONE
[2025-07-27 03:29:54] 2025-07-27 07:29:18,946 | INFO     | job 6745939225 has finished - writing final server update
[2025-07-27 03:29:54] 2025-07-27 07:29:18,947 | INFO     | total number of processed events: 400 (read)
[2025-07-27 03:29:54] 2025-07-27 07:29:18,947 | INFO     | executing command: lscpu
[2025-07-27 03:29:54] 2025-07-27 07:29:19,005 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 03:29:54] 2025-07-27 07:29:19,224 | WARNING  | process 4173229 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 03:29:54] 2025-07-27 07:29:19,226 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6745939225/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 03:29:54] 2025-07-27 07:29:19,556 | INFO     | number of running child processes to parent process 4173229: 1
[2025-07-27 03:29:54] 2025-07-27 07:29:19,556 | INFO     | maximum number of monitored processes: 6
[2025-07-27 03:29:54] 2025-07-27 07:29:22,059 | INFO     | monitor loop #265: job 0:6745939225 is in state 'finished'
[2025-07-27 03:29:54] 2025-07-27 07:29:22,059 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 03:29:54] 2025-07-27 07:29:22,619 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 03:29:54] 2025-07-27 07:29:22,624 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3769.8634999999995
[2025-07-27 03:29:54] 2025-07-27 07:29:22,638 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6745939225/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 03:29:54] 2025-07-27 07:29:22,638 | INFO     | extracted standard info from prmon json
[2025-07-27 03:29:54] 2025-07-27 07:29:22,638 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 03:29:54] 2025-07-27 07:29:22,638 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 03:29:54] 2025-07-27 07:29:22,639 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 03:29:54] 2025-07-27 07:29:22,639 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | fitting pss+swap vs Time
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | sum of square deviations: 43584073.0
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | sum of deviations: -1587092693.0000005
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | mean x: 1753599664.5
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | mean y: 2569374.923076923
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | -- intersect: 63859043137.14356
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | intersect: 63859043137.14356
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | chi2: 0.0017663832914200212
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | -- intersect: 63859043137.14356
[2025-07-27 03:29:54] 2025-07-27 07:29:22,640 | INFO     | current memory leak: -36.41 B/s (using 52 data points, chi2=0.00)
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | could have reported an average CPU frequency of 3783 MHz (5 samples)
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | ..............................
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | . Timing measurements:
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | . get job = 0 s
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | . initial setup = 2 s
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | . payload setup = 5 s
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | . stage-in = 0 s
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | . payload execution = 3551 s
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | . stage-out = 0 s
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | . log creation = 0 s
[2025-07-27 03:29:54] 2025-07-27 07:29:22,641 | INFO     | ..............................
[2025-07-27 03:29:54] 2025-07-27 07:29:22,703 | INFO     | 
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | job summary report
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | --------------------------------------------------
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | PanDA job id: 6745939225
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | task id: 45758350
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | errors: (none)
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | pilot state: finished 
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | transexitcode: 0
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | exeerrorcode: 0
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | exeerrordiag: 
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | exitcode: 0
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | exitmsg: OK
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | cpuconsumptiontime: 26553 s
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | nevents: 400
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | neventsw: 0
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | pid: 4173229
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | pgrp: 4173229
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | corecount: 8
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | event service: False
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | sizes: {0: 2397484, 4: 2397746, 11: 2397774, 3561: 2432501, 3564: 2432501, 3569: 2432727}
[2025-07-27 03:29:54] 2025-07-27 07:29:22,704 | INFO     | --------------------------------------------------
[2025-07-27 03:29:54] 2025-07-27 07:29:22,705 | INFO     | 
[2025-07-27 03:29:54] 2025-07-27 07:29:22,705 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-27 03:29:54] 2025-07-27 07:29:22,724 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,724 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,724 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | job 6745939225 has completed (purged errors)
[2025-07-27 03:29:54] 2025-07-27 07:29:22,725 | INFO     | overall cleanup function is called
[2025-07-27 03:29:54] 2025-07-27 07:29:23,733 | INFO     | --- collectZombieJob: --- 10, [4173229]
[2025-07-27 03:29:54] 2025-07-27 07:29:23,734 | INFO     | zombie collector waiting for pid 4173229
[2025-07-27 03:29:54] 2025-07-27 07:29:23,734 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 03:29:54] 2025-07-27 07:29:23,734 | INFO     | collected zombie processes
[2025-07-27 03:29:54] 2025-07-27 07:29:23,734 | INFO     | will attempt to kill all subprocesses of pid=4173229
[2025-07-27 03:29:54] 2025-07-27 07:29:24,074 | INFO     | process IDs to be killed: [4173229] (in reverse order)
[2025-07-27 03:29:54] 2025-07-27 07:29:24,184 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 03:29:54] 2025-07-27 07:29:24,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 03:29:54] 2025-07-27 07:29:24,200 | INFO     | did not find any defunct processes belonging to 4173229
[2025-07-27 03:29:54] 2025-07-27 07:29:24,213 | INFO     | did not find any defunct processes belonging to 4173229
[2025-07-27 03:29:54] 2025-07-27 07:29:24,214 | INFO     | ready for new job
[2025-07-27 03:29:54] 2025-07-27 07:29:24,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 03:29:54] 2025-07-27 07:29:24,215 | INFO     | ***************************************
[2025-07-27 03:29:54] 2025-07-27 07:29:24,215 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 03:29:54] 2025-07-27 07:29:24,215 | INFO     | ***************************************
[2025-07-27 03:29:54] 2025-07-27 07:29:24,215 | INFO     | 
[2025-07-27 03:29:54] 2025-07-27 07:29:24,219 | INFO     | architecture information:
[2025-07-27 03:29:54] 2025-07-27 07:29:24,220 | INFO     | executing command: cat /etc/os-release
[2025-07-27 03:29:54] 2025-07-27 07:29:24,235 | INFO     | cat /etc/os-release:
[2025-07-27 03:29:54] NAME="CentOS Linux"
[2025-07-27 03:29:54] VERSION="7 (Core)"
[2025-07-27 03:29:54] ID="centos"
[2025-07-27 03:29:54] ID_LIKE="rhel fedora"
[2025-07-27 03:29:54] VERSION_ID="7"
[2025-07-27 03:29:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 03:29:54] ANSI_COLOR="0;31"
[2025-07-27 03:29:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 03:29:54] HOME_URL="https://www.centos.org/"
[2025-07-27 03:29:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 03:29:54] 
[2025-07-27 03:29:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 03:29:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 03:29:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 03:29:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 03:29:54] 
[2025-07-27 03:29:54] 2025-07-27 07:29:24,235 | INFO     | ***************************************
[2025-07-27 03:29:54] 2025-07-27 07:29:24,738 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-27 03:29:54] 2025-07-27 07:29:24,756 | INFO     | sufficient remaining disk space (165111922688 B)
[2025-07-27 03:29:54] 2025-07-27 07:29:24,757 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 03:29:54] 2025-07-27 07:29:24,757 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 03:29:54] 2025-07-27 07:29:24,757 | INFO     | update_server=False
[2025-07-27 03:29:54] 2025-07-27 07:29:24,757 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 03:29:54] 2025-07-27 07:29:25,244 | INFO     | all payload control threads have been joined
[2025-07-27 03:29:54] 2025-07-27 07:29:25,568 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 03:29:54] 2025-07-27 07:29:25,568 | INFO     | aborting loop
[2025-07-27 03:29:54] 2025-07-27 07:29:25,639 | INFO     | all data control threads have been joined
[2025-07-27 03:29:54] 2025-07-27 07:29:25,762 | INFO     | [job] retrieve thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:25,859 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 03:29:54] 2025-07-27 07:29:25,899 | INFO     | [job] validate thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:25,958 | INFO     | all job control threads have been joined
[2025-07-27 03:29:54] 2025-07-27 07:29:26,050 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:26,091 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:26,106 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:26,249 | INFO     | [payload] control thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:26,440 | INFO     | [payload] failed_post thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:26,573 | INFO     | [job] job monitor thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:26,644 | INFO     | [data] control thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:26,801 | INFO     | [data] copytool_in thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:26,963 | INFO     | [job] control thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:27,004 | INFO     | [payload] validate_post thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:27,714 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 03:29:54] 2025-07-27 07:29:27,865 | INFO     | [data] copytool_out thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:27,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 03:29:54] 2025-07-27 07:29:28,720 | INFO     | [job] queue monitor thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:31,946 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:35,121 | INFO     | job.realtimelogging is not enabled
[2025-07-27 03:29:54] 2025-07-27 07:29:36,126 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 03:29:54] 2025-07-27 07:29:36,908 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-07-27 03:29:54] 2025-07-27 07:29:37,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140162494023488)>', '<ExcThread(monitor, started 140162004666112)>']
[2025-07-27 03:29:54] 2025-07-27 07:29:42,027 | INFO     | all workflow threads have been joined
[2025-07-27 03:29:54] 2025-07-27 07:29:42,027 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 03:29:54] 2025-07-27 07:29:42,027 | INFO     | traces error code: 0
[2025-07-27 03:29:54] 2025-07-27 07:29:42,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 03:29:54] 2025-07-27 07:29:54,368 | INFO     | PID=4166696 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 03:29:54] 2025-07-27 07:29:54,369 | INFO     | .. there are 15 such processes running
[2025-07-27 03:29:54] 2025-07-27 07:29:54,369 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 03:29:54] 2025-07-27 07:29:54,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 03:29:54] 2025-07-27 07:29:54,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 03:29:54] 2025-07-27 07:29:54,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 03:29:54] 2025-07-27 07:29:54,370 | INFO     | [monitor] control thread has ended
[2025-07-27 03:29:54] 2025-07-27 07:29:54,463 [wrapper] ==== pilot stdout END ====
[2025-07-27 03:29:54] 2025-07-27 07:29:54,467 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 03:29:54] 2025-07-27 07:29:54,469 [wrapper] pilotpid: 4166696
[2025-07-27 03:29:54] 2025-07-27 07:29:54,472 [wrapper] Pilot exit status: 0
[2025-07-27 03:29:54] 2025-07-27 07:29:54,483 [wrapper] pandaids: 6745939225
[2025-07-27 03:29:54] 2025-07-27 07:29:54,565 [wrapper] cleanup supervisor_pilot  331690 4166697
[2025-07-27 03:29:54] 2025-07-27 07:29:54,568 [wrapper] Test setup, not cleaning
[2025-07-27 03:29:54] 2025-07-27 07:29:54,571 [wrapper] apfmon messages muted
[2025-07-27 03:29:54] 2025-07-27 07:29:54,574 [wrapper] ==== wrapper stdout END ====
[2025-07-27 03:29:54] 2025-07-27 07:29:54,577 [wrapper] ==== wrapper stderr END ====
[2025-07-27 03:29:54]  *** Error codes and diagnostics ***
[2025-07-27 03:29:54]     "exeErrorCode": 0,
[2025-07-27 03:29:54]     "exeErrorDiag": "",
[2025-07-27 03:29:54]     "pilotErrorCode": 0,
[2025-07-27 03:29:54]     "pilotErrorDiag": "",
[2025-07-27 03:29:54]  *** Listing of results directory ***
[2025-07-27 03:29:54] total 410112
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 21:08 pilot3.tar.gz
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 21:13 queuedata.json
[2025-07-27 03:29:54] -rwx------. 1 boincer umatlas     36292 Jul 26 21:14 runpilot2-wrapper.sh
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas       100 Jul 27 02:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 03:29:54] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 02:29 run_atlas
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas       105 Jul 27 02:29 job.xml
[2025-07-27 03:29:54] -rw-r--r--. 2 boincer umatlas 242115241 Jul 27 02:29 EVNT.45758348._000002.pool.root.1
[2025-07-27 03:29:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:29 start_atlas.sh
[2025-07-27 03:29:54] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 02:29 shared
[2025-07-27 03:29:54] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 02:29 input.tar.gz
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas         0 Jul 27 02:29 boinc_lockfile
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas      2577 Jul 27 02:29 pandaJob.out
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas    980125 Jul 27 02:29 agis_schedconf.cvmfs.json
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas   1593052 Jul 27 02:29 agis_ddmendpoints.agis.ALL.json
[2025-07-27 03:29:54] drwx------. 4 boincer umatlas      4096 Jul 27 02:29 pilot3
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas      7174 Jul 27 03:27 init_data.xml
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas 172665950 Jul 27 03:28 HITS.45758350._000030.pool.root.1
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas        95 Jul 27 03:28 pilot_heartbeat.json
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas       529 Jul 27 03:28 boinc_task_state.xml
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas      1029 Jul 27 03:29 memory_monitor_summary.json
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas    285912 Jul 27 03:29 log.45758350._000030.job.log.tgz.1
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas      7759 Jul 27 03:29 heartbeat.json
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 03:29 boinc_mmap_file
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas        27 Jul 27 03:29 wrapper_checkpoint.txt
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas       823 Jul 27 03:29 pilotlog.txt
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas    364820 Jul 27 03:29 log.45758350._000030.job.log.1
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas       357 Jul 27 03:29 output.list
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas       620 Jul 27 03:29 runtime_log
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas    665600 Jul 27 03:29 result.tar.gz
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 03:29 runtime_log.err
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas       651 Jul 27 03:29 cAQKDmr84z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5mTLDmLuzxHn.diag
[2025-07-27 03:29:54] -rw-r--r--. 1 boincer umatlas     21938 Jul 27 03:29 stderr.txt
[2025-07-27 03:29:54] HITS file was successfully produced:
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas 172665950 Jul 27 03:28 shared/HITS.pool.root.1
[2025-07-27 03:29:54]  *** Contents of shared directory: ***
[2025-07-27 03:29:54] total 406268
[2025-07-27 03:29:54] -rw-r--r--. 2 boincer umatlas 242115241 Jul 27 02:29 ATLAS.root_0
[2025-07-27 03:29:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:29 start_atlas.sh
[2025-07-27 03:29:54] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 02:29 input.tar.gz
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas 172665950 Jul 27 03:28 HITS.pool.root.1
[2025-07-27 03:29:54] -rw-------. 1 boincer umatlas    665600 Jul 27 03:29 result.tar.gz
03:29:56 (4163109): run_atlas exited; CPU time 26633.861037
03:29:56 (4163109): called boinc_finish(0)

</stderr_txt>
]]>

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