Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:13:13 (4150254): wrapper (7.7.26015): starting
02:13:13 (4150254): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 02:13:13] Arguments: --nthreads 12
[2025-07-27 02:13:13] Threads: 12
[2025-07-27 02:13:13] Checking for CVMFS
[2025-07-27 02:13:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:13:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:13:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:13:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:13:14] 2.13.1.0 130249 6322 107424 148802 0 104 40336044 40960001 6019 16776704 0 6907905 99.741 8336942 31275 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 02:13:14] CVMFS is ok
[2025-07-27 02:13:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:13:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:13:14] Further information can be found at the LHC@home message board.
[2025-07-27 02:13:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:13:14] Checking for apptainer binary...
[2025-07-27 02:13:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:13:14] Running /usr/bin/apptainer --version
[2025-07-27 02:13:14] apptainer version 1.4.1-1.el9
[2025-07-27 02:13:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:13:14] c-211-6.aglt2.org
[2025-07-27 02:13:14] apptainer works
[2025-07-27 02:13:14] Set ATHENA_PROC_NUMBER=12
[2025-07-27 02:13:14] Set ATHENA_CORE_NUMBER=12
[2025-07-27 02:13:14] Starting ATLAS job with PandaID=6745925318
[2025-07-27 02:13:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:12:25 (41529): wrapper (7.7.26015): starting
03:12:25 (41529): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:12:25] Arguments: --nthreads 12
[2025-07-27 03:12:25] Threads: 12
[2025-07-27 03:12:25] This job has been restarted, cleaning up previous attempt
[2025-07-27 03:12:25] Checking for CVMFS
[2025-07-27 03:12:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:12:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:12:26] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:12:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:12:26] 2.13.1.0 130249 6381 117264 148803 1 351 40362850 40960000 7203 16776704 0 7001164 99.743 8338388 31270 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 03:12:26] CVMFS is ok
[2025-07-27 03:12:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:12:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:12:26] Further information can be found at the LHC@home message board.
[2025-07-27 03:12:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:12:26] Checking for apptainer binary...
[2025-07-27 03:12:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:12:26] Running /usr/bin/apptainer --version
[2025-07-27 03:12:26] apptainer version 1.4.1-1.el9
[2025-07-27 03:12:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:12:26] c-211-6.aglt2.org
[2025-07-27 03:12:26] apptainer works
[2025-07-27 03:12:26] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:12:26] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:12:26] Starting ATLAS job with PandaID=6745925318
[2025-07-27 03:12:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 06:13:40]  *** The last 200 lines of the pilot log: ***
[2025-07-27 06:13:40] 2025-07-27 10:13:02,051 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 06:13:40] 2025-07-27 10:13:04,413 | INFO     | monitor loop #720: job 0:6745925318 is in state 'finished'
[2025-07-27 06:13:40] 2025-07-27 10:13:04,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,597 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 06:13:40] 2025-07-27 10:13:06,608 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2449.9634375
[2025-07-27 06:13:40] 2025-07-27 10:13:06,619 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745925318/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,620 | INFO     | extracted standard info from prmon json
[2025-07-27 06:13:40] 2025-07-27 10:13:06,621 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 06:13:40] 2025-07-27 10:13:06,621 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 06:13:40] 2025-07-27 10:13:06,621 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 06:13:40] 2025-07-27 10:13:06,621 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 06:13:40] 2025-07-27 10:13:06,626 | INFO     | fitting pss+swap vs Time
[2025-07-27 06:13:40] 2025-07-27 10:13:06,627 | INFO     | sum of square deviations: 1719420488.8587508
[2025-07-27 06:13:40] 2025-07-27 10:13:06,628 | INFO     | sum of deviations: -6618839720.079097
[2025-07-27 06:13:40] 2025-07-27 10:13:06,629 | INFO     | mean x: 1753605757.3615818
[2025-07-27 06:13:40] 2025-07-27 10:13:06,629 | INFO     | mean y: 2795054.2824858758
[2025-07-27 06:13:40] 2025-07-27 10:13:06,629 | INFO     | -- intersect: 6753229584.632972
[2025-07-27 06:13:40] 2025-07-27 10:13:06,629 | INFO     | intersect: 6753229584.632972
[2025-07-27 06:13:40] 2025-07-27 10:13:06,630 | INFO     | chi2: 1.8369395273964322
[2025-07-27 06:13:40] 2025-07-27 10:13:06,630 | INFO     | sum of square deviations: 1577800143.186043
[2025-07-27 06:13:40] 2025-07-27 10:13:06,632 | INFO     | sum of deviations: -5630533628.139536
[2025-07-27 06:13:40] 2025-07-27 10:13:06,632 | INFO     | mean x: 1753605604.872093
[2025-07-27 06:13:40] 2025-07-27 10:13:06,632 | INFO     | mean y: 2796118.7209302327
[2025-07-27 06:13:40] 2025-07-27 10:13:06,632 | INFO     | -- intersect: 6260708675.876815
[2025-07-27 06:13:40] 2025-07-27 10:13:06,632 | INFO     | intersect: 6260708675.876815
[2025-07-27 06:13:40] 2025-07-27 10:13:06,633 | INFO     | chi2: 1.8379151142695926
[2025-07-27 06:13:40] 2025-07-27 10:13:06,633 | INFO     | current chi2=1.8379151142695926 (change=-0.053109362535368784 %)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,633 | INFO     | right removable region: 171
[2025-07-27 06:13:40] 2025-07-27 10:13:06,634 | INFO     | sum of square deviations: 1577761103.186043
[2025-07-27 06:13:40] 2025-07-27 10:13:06,635 | INFO     | sum of deviations: -41550416870.43024
[2025-07-27 06:13:40] 2025-07-27 10:13:06,635 | INFO     | mean x: 1753605909.872093
[2025-07-27 06:13:40] 2025-07-27 10:13:06,635 | INFO     | mean y: 2832287.3895348837
[2025-07-27 06:13:40] 2025-07-27 10:13:06,635 | INFO     | -- intersect: 46184130859.461044
[2025-07-27 06:13:40] 2025-07-27 10:13:06,635 | INFO     | intersect: 46184130859.461044
[2025-07-27 06:13:40] 2025-07-27 10:13:06,636 | INFO     | chi2: 0.13733362852210287
[2025-07-27 06:13:40] 2025-07-27 10:13:06,636 | INFO     | current chi2=0.13733362852210287 (change=92.5237806430813 %)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,637 | INFO     | sum of square deviations: 1444101867.4730587
[2025-07-27 06:13:40] 2025-07-27 10:13:06,638 | INFO     | sum of deviations: -41563261030.952095
[2025-07-27 06:13:40] 2025-07-27 10:13:06,638 | INFO     | mean x: 1753606062.3832335
[2025-07-27 06:13:40] 2025-07-27 10:13:06,639 | INFO     | mean y: 2832226.874251497
[2025-07-27 06:13:40] 2025-07-27 10:13:06,639 | INFO     | -- intersect: 50474054623.27778
[2025-07-27 06:13:40] 2025-07-27 10:13:06,639 | INFO     | intersect: 50474054623.27778
[2025-07-27 06:13:40] 2025-07-27 10:13:06,639 | INFO     | chi2: 0.10484625674518817
[2025-07-27 06:13:40] 2025-07-27 10:13:06,640 | INFO     | current chi2=0.10484625674518817 (change=23.65580238906022 %)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,640 | INFO     | left removable region: 20
[2025-07-27 06:13:40] 2025-07-27 10:13:06,640 | INFO     | sum of square deviations: 1067501406.3576163
[2025-07-27 06:13:40] 2025-07-27 10:13:06,641 | INFO     | sum of deviations: -31694316923.09272
[2025-07-27 06:13:40] 2025-07-27 10:13:06,641 | INFO     | mean x: 1753606184.4039736
[2025-07-27 06:13:40] 2025-07-27 10:13:06,642 | INFO     | mean y: 2824691.821192053
[2025-07-27 06:13:40] 2025-07-27 10:13:06,642 | INFO     | -- intersect: 52067721127.354
[2025-07-27 06:13:40] 2025-07-27 10:13:06,642 | INFO     | intersect: 52067721127.354
[2025-07-27 06:13:40] 2025-07-27 10:13:06,642 | INFO     | chi2: 0.10041174305720386
[2025-07-27 06:13:40] 2025-07-27 10:13:06,642 | INFO     | -- intersect: 52067721127.354
[2025-07-27 06:13:40] 2025-07-27 10:13:06,643 | INFO     | current memory leak: -29.69 B/s (using 151 data points, chi2=0.10)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,643 | INFO     | could have reported an average CPU frequency of 2454 MHz (9 samples)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,644 | INFO     | ..............................
[2025-07-27 06:13:40] 2025-07-27 10:13:06,644 | INFO     | . Timing measurements:
[2025-07-27 06:13:40] 2025-07-27 10:13:06,644 | INFO     | . get job = 0 s
[2025-07-27 06:13:40] 2025-07-27 10:13:06,644 | INFO     | . initial setup = 1 s
[2025-07-27 06:13:40] 2025-07-27 10:13:06,644 | INFO     | . payload setup = 8 s
[2025-07-27 06:13:40] 2025-07-27 10:13:06,644 | INFO     | . stage-in = 0 s
[2025-07-27 06:13:40] 2025-07-27 10:13:06,644 | INFO     | . payload execution = 10789 s
[2025-07-27 06:13:40] 2025-07-27 10:13:06,644 | INFO     | . stage-out = 2 s
[2025-07-27 06:13:40] 2025-07-27 10:13:06,645 | INFO     | . log creation = 0 s
[2025-07-27 06:13:40] 2025-07-27 10:13:06,645 | INFO     | ..............................
[2025-07-27 06:13:40] 2025-07-27 10:13:06,778 | INFO     | 
[2025-07-27 06:13:40] 2025-07-27 10:13:06,779 | INFO     | job summary report
[2025-07-27 06:13:40] 2025-07-27 10:13:06,779 | INFO     | --------------------------------------------------
[2025-07-27 06:13:40] 2025-07-27 10:13:06,779 | INFO     | PanDA job id: 6745925318
[2025-07-27 06:13:40] 2025-07-27 10:13:06,779 | INFO     | task id: 45758730
[2025-07-27 06:13:40] 2025-07-27 10:13:06,779 | INFO     | errors: (none)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,779 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 06:13:40] 2025-07-27 10:13:06,779 | INFO     | pilot state: finished 
[2025-07-27 06:13:40] 2025-07-27 10:13:06,779 | INFO     | transexitcode: 0
[2025-07-27 06:13:40] 2025-07-27 10:13:06,780 | INFO     | exeerrorcode: 0
[2025-07-27 06:13:40] 2025-07-27 10:13:06,780 | INFO     | exeerrordiag: 
[2025-07-27 06:13:40] 2025-07-27 10:13:06,780 | INFO     | exitcode: 0
[2025-07-27 06:13:40] 2025-07-27 10:13:06,780 | INFO     | exitmsg: OK
[2025-07-27 06:13:40] 2025-07-27 10:13:06,780 | INFO     | cpuconsumptiontime: 76251 s
[2025-07-27 06:13:40] 2025-07-27 10:13:06,780 | INFO     | nevents: 400
[2025-07-27 06:13:40] 2025-07-27 10:13:06,780 | INFO     | neventsw: 0
[2025-07-27 06:13:40] 2025-07-27 10:13:06,780 | INFO     | pid: 51585
[2025-07-27 06:13:40] 2025-07-27 10:13:06,781 | INFO     | pgrp: 51585
[2025-07-27 06:13:40] 2025-07-27 10:13:06,781 | INFO     | corecount: 12
[2025-07-27 06:13:40] 2025-07-27 10:13:06,781 | INFO     | event service: False
[2025-07-27 06:13:40] 2025-07-27 10:13:06,781 | INFO     | sizes: {0: 2397306, 1: 2397505, 6: 2397767, 12: 2397795, 10802: 2426934, 10805: 2435932, 10807: 2436116, 10812: 2436374}
[2025-07-27 06:13:40] 2025-07-27 10:13:06,781 | INFO     | --------------------------------------------------
[2025-07-27 06:13:40] 2025-07-27 10:13:06,781 | INFO     | 
[2025-07-27 06:13:40] 2025-07-27 10:13:06,781 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 06:13:40] 2025-07-27 10:13:06,808 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,808 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,808 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,808 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,809 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,809 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,809 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,809 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,809 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,809 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,809 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,809 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,810 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,810 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,810 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,810 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,810 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,810 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,810 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,811 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 06:13:40] 2025-07-27 10:13:06,811 | INFO     | job 6745925318 has completed (purged errors)
[2025-07-27 06:13:40] 2025-07-27 10:13:06,811 | INFO     | overall cleanup function is called
[2025-07-27 06:13:40] 2025-07-27 10:13:07,822 | INFO     | --- collectZombieJob: --- 10, [51585]
[2025-07-27 06:13:40] 2025-07-27 10:13:07,823 | INFO     | zombie collector waiting for pid 51585
[2025-07-27 06:13:40] 2025-07-27 10:13:07,823 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 06:13:40] 2025-07-27 10:13:07,823 | INFO     | collected zombie processes
[2025-07-27 06:13:40] 2025-07-27 10:13:07,823 | INFO     | will attempt to kill all subprocesses of pid=51585
[2025-07-27 06:13:40] 2025-07-27 10:13:08,115 | INFO     | process IDs to be killed: [51585] (in reverse order)
[2025-07-27 06:13:40] 2025-07-27 10:13:08,196 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 06:13:40] 2025-07-27 10:13:08,197 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 06:13:40] 2025-07-27 10:13:08,206 | INFO     | did not find any defunct processes belonging to 51585
[2025-07-27 06:13:40] 2025-07-27 10:13:08,217 | INFO     | did not find any defunct processes belonging to 51585
[2025-07-27 06:13:40] 2025-07-27 10:13:08,218 | INFO     | ready for new job
[2025-07-27 06:13:40] 2025-07-27 10:13:08,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 06:13:40] 2025-07-27 10:13:08,220 | INFO     | ***************************************
[2025-07-27 06:13:40] 2025-07-27 10:13:08,220 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 06:13:40] 2025-07-27 10:13:08,220 | INFO     | ***************************************
[2025-07-27 06:13:40] 2025-07-27 10:13:08,221 | INFO     | 
[2025-07-27 06:13:40] 2025-07-27 10:13:08,224 | INFO     | architecture information:
[2025-07-27 06:13:40] 2025-07-27 10:13:08,225 | INFO     | executing command: cat /etc/os-release
[2025-07-27 06:13:40] 2025-07-27 10:13:08,242 | INFO     | cat /etc/os-release:
[2025-07-27 06:13:40] NAME="CentOS Linux"
[2025-07-27 06:13:40] VERSION="7 (Core)"
[2025-07-27 06:13:40] ID="centos"
[2025-07-27 06:13:40] ID_LIKE="rhel fedora"
[2025-07-27 06:13:40] VERSION_ID="7"
[2025-07-27 06:13:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 06:13:40] ANSI_COLOR="0;31"
[2025-07-27 06:13:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 06:13:40] HOME_URL="https://www.centos.org/"
[2025-07-27 06:13:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 06:13:40] 
[2025-07-27 06:13:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 06:13:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 06:13:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 06:13:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 06:13:40] 
[2025-07-27 06:13:40] 2025-07-27 10:13:08,242 | INFO     | ***************************************
[2025-07-27 06:13:40] 2025-07-27 10:13:08,743 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 06:13:40] 2025-07-27 10:13:08,763 | INFO     | sufficient remaining disk space (64535658496 B)
[2025-07-27 06:13:40] 2025-07-27 10:13:08,763 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 06:13:40] 2025-07-27 10:13:08,763 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 06:13:40] 2025-07-27 10:13:08,764 | INFO     | update_server=False
[2025-07-27 06:13:40] 2025-07-27 10:13:08,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 06:13:40] 2025-07-27 10:13:08,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 06:13:40] 2025-07-27 10:13:08,765 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 06:13:40] 2025-07-27 10:13:08,765 | INFO     | aborting loop
[2025-07-27 06:13:40] 2025-07-27 10:13:09,255 | INFO     | all payload control threads have been joined
[2025-07-27 06:13:40] 2025-07-27 10:13:09,673 | INFO     | all job control threads have been joined
[2025-07-27 06:13:40] 2025-07-27 10:13:09,768 | INFO     | [job] retrieve thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:09,770 | INFO     | [job] queue monitor thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:09,771 | INFO     | [job] job monitor thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:09,854 | INFO     | all data control threads have been joined
[2025-07-27 06:13:40] 2025-07-27 10:13:09,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 06:13:40] 2025-07-27 10:13:10,260 | INFO     | [payload] control thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:10,628 | INFO     | [payload] validate_post thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:10,679 | INFO     | [job] control thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:10,680 | INFO     | [data] copytool_in thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:10,701 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:10,734 | INFO     | [payload] failed_post thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:10,743 | INFO     | [job] validate thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:10,859 | INFO     | [data] control thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:10,996 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:11,195 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:11,794 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 06:13:40] 2025-07-27 10:13:11,867 | INFO     | [data] copytool_out thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:15,800 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:19,237 | INFO     | job.realtimelogging is not enabled
[2025-07-27 06:13:40] 2025-07-27 10:13:20,242 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 06:13:40] 2025-07-27 10:13:21,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140147051681600)>', '<ExcThread(monitor, started 140146544449280)>']
[2025-07-27 06:13:40] 2025-07-27 10:13:26,324 | INFO     | all workflow threads have been joined
[2025-07-27 06:13:40] 2025-07-27 10:13:26,325 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 06:13:40] 2025-07-27 10:13:26,325 | INFO     | traces error code: 0
[2025-07-27 06:13:40] 2025-07-27 10:13:26,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 06:13:40] 2025-07-27 10:13:40,168 | INFO     | PID=45157 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 06:13:40] 2025-07-27 10:13:40,169 | INFO     | .. there are 7 such processes running
[2025-07-27 06:13:40] 2025-07-27 10:13:40,169 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 06:13:40] 2025-07-27 10:13:40,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 06:13:40] 2025-07-27 10:13:40,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 06:13:40] 2025-07-27 10:13:40,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 06:13:40] 2025-07-27 10:13:40,169 | INFO     | [monitor] control thread has ended
[2025-07-27 06:13:40] 2025-07-27 10:13:40,356 [wrapper] ==== pilot stdout END ====
[2025-07-27 06:13:40] 2025-07-27 10:13:40,359 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 06:13:40] 2025-07-27 10:13:40,363 [wrapper] pilotpid: 45157
[2025-07-27 06:13:40] 2025-07-27 10:13:40,367 [wrapper] Pilot exit status: 0
[2025-07-27 06:13:40] 2025-07-27 10:13:40,429 [wrapper] pandaids: 6745925318 6745925318
[2025-07-27 06:13:40] 2025-07-27 10:13:40,487 [wrapper] cleanup supervisor_pilot  263592 45158
[2025-07-27 06:13:40] 2025-07-27 10:13:40,490 [wrapper] Test setup, not cleaning
[2025-07-27 06:13:40] 2025-07-27 10:13:40,493 [wrapper] apfmon messages muted
[2025-07-27 06:13:40] 2025-07-27 10:13:40,496 [wrapper] ==== wrapper stdout END ====
[2025-07-27 06:13:40] 2025-07-27 10:13:40,498 [wrapper] ==== wrapper stderr END ====
[2025-07-27 06:13:40]  *** Error codes and diagnostics ***
[2025-07-27 06:13:40]     "exeErrorCode": 0,
[2025-07-27 06:13:40]     "exeErrorDiag": "",
[2025-07-27 06:13:40]     "pilotErrorCode": 0,
[2025-07-27 06:13:40]     "pilotErrorDiag": "",
[2025-07-27 06:13:40]  *** Listing of results directory ***
[2025-07-27 06:13:40] total 657840
[2025-07-27 06:13:40] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 20:36 pilot3.tar.gz
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:58 queuedata.json
[2025-07-27 06:13:40] -rwx------. 1 boincer umatlas     36292 Jul 26 20:59 runpilot2-wrapper.sh
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas       100 Jul 27 02:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 06:13:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 02:13 run_atlas
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas       105 Jul 27 02:13 job.xml
[2025-07-27 06:13:40] -rw-r--r--. 3 boincer umatlas 245334648 Jul 27 02:13 EVNT.45758728._000005.pool.root.1
[2025-07-27 06:13:40] -rw-r--r--. 3 boincer umatlas 245334648 Jul 27 02:13 ATLAS.root_0
[2025-07-27 06:13:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:13 start_atlas.sh
[2025-07-27 06:13:40] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 02:13 shared
[2025-07-27 06:13:40] -rw-r--r--. 2 boincer umatlas    542890 Jul 27 02:13 input.tar.gz
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas         0 Jul 27 02:13 boinc_lockfile
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas      2568 Jul 27 03:12 pandaJob.out
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas    980125 Jul 27 03:12 agis_schedconf.cvmfs.json
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas      6610 Jul 27 06:09 init_data.xml
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas 176305897 Jul 27 06:12 HITS.45758730._000125.pool.root.1
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas       530 Jul 27 06:12 boinc_task_state.xml
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas      1046 Jul 27 06:12 memory_monitor_summary.json
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas   1593052 Jul 27 06:12 agis_ddmendpoints.agis.ALL.json
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas    436976 Jul 27 06:12 log.45758730._000125.job.log.tgz.1
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas        96 Jul 27 06:13 pilot_heartbeat.json
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas      7829 Jul 27 06:13 heartbeat.json
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas        28 Jul 27 06:13 wrapper_checkpoint.txt
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 06:13 boinc_mmap_file
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas       820 Jul 27 06:13 pilotlog.txt
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas    951167 Jul 27 06:13 log.45758730._000125.job.log.1
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas       357 Jul 27 06:13 output.list
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas       620 Jul 27 06:13 runtime_log
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas   1402880 Jul 27 06:13 result.tar.gz
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas      8743 Jul 27 06:13 runtime_log.err
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas       784 Jul 27 06:13 GYXNDmru4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIjTLDmA9KEkm.diag
[2025-07-27 06:13:40] -rw-r--r--. 1 boincer umatlas     23443 Jul 27 06:13 stderr.txt
[2025-07-27 06:13:40] HITS file was successfully produced:
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas 176305897 Jul 27 06:12 shared/HITS.pool.root.1
[2025-07-27 06:13:40]  *** Contents of shared directory: ***
[2025-07-27 06:13:40] total 413688
[2025-07-27 06:13:40] -rw-r--r--. 3 boincer umatlas 245334648 Jul 27 02:13 ATLAS.root_0
[2025-07-27 06:13:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:13 start_atlas.sh
[2025-07-27 06:13:40] -rw-r--r--. 2 boincer umatlas    542890 Jul 27 02:13 input.tar.gz
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas 176305897 Jul 27 06:12 HITS.pool.root.1
[2025-07-27 06:13:40] -rw-------. 1 boincer umatlas   1402880 Jul 27 06:13 result.tar.gz
06:13:41 (41529): run_atlas exited; CPU time 76532.015541
06:13:41 (41529): called boinc_finish(0)

</stderr_txt>
]]>

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