Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:36:23 (3868091): wrapper (7.7.26015): starting
03:36:23 (3868091): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 03:36:23] Arguments: --nthreads 12
[2025-07-28 03:36:23] Threads: 12
[2025-07-28 03:36:23] Checking for CVMFS
[2025-07-28 03:36:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 03:36:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 03:36:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 03:36:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 03:36:24] 2.13.1.0 4489 33890 111908 148830 2 57 42359264 46080001 922 130560 0 26688759 99.994 1054228 20768 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-28 03:36:24] CVMFS is ok
[2025-07-28 03:36:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 03:36:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 03:36:24] Further information can be found at the LHC@home message board.
[2025-07-28 03:36:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 03:36:24] Checking for apptainer binary...
[2025-07-28 03:36:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 03:36:24] Running /usr/bin/apptainer --version
[2025-07-28 03:36:24] apptainer version 1.4.1-1.el9
[2025-07-28 03:36:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 03:36:24] minis01.farm.particle.cz
[2025-07-28 03:36:24] apptainer works
[2025-07-28 03:36:24] Set ATHENA_PROC_NUMBER=12
[2025-07-28 03:36:24] Set ATHENA_CORE_NUMBER=12
[2025-07-28 03:36:24] Starting ATLAS job with PandaID=6745938910
[2025-07-28 03:36:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 04:39:12]  *** The last 200 lines of the pilot log: ***
[2025-07-28 04:39:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 04:39:12]  replicas=None
[2025-07-28 04:39:12]  scope=mc23_13p6TeV
[2025-07-28 04:39:12]  status=None
[2025-07-28 04:39:12]  status_code=0
[2025-07-28 04:39:12]  storage_token=
[2025-07-28 04:39:12]  surl=/scratch/.boinc/slots/1/PanDA_Pilot-6745938910/log.45758332._000068.job.log.tgz.1
[2025-07-28 04:39:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/43/log.45758332._000068.job.log.tgz.1
[2025-07-28 04:39:12]  workdir=None
[2025-07-28 04:39:12] ]
[2025-07-28 04:39:12] 2025-07-28 02:38:30,573 | INFO     | transferring file log.45758332._000068.job.log.tgz.1 from /scratch/.boinc/slots/1/PanDA_Pilot-6745938910/log.45758332._000068.job.log.tgz.1 to /scratch/.boinc/slot
[2025-07-28 04:39:12] 2025-07-28 02:38:30,574 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/1/PanDA_Pilot-6745938910/log.45758332._000068.job.log.tgz.1 /scratch/.boinc/slots/1/log.45758332._000068.j
[2025-07-28 04:39:12] 2025-07-28 02:38:30,590 | INFO     | adding to output.list: log.45758332._000068.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/43/log.45758332._000068.job.log.tg
[2025-07-28 04:39:12] 2025-07-28 02:38:30,590 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 04:39:12] 2025-07-28 02:38:30,590 | INFO     | summary of transferred files:
[2025-07-28 04:39:12] 2025-07-28 02:38:30,590 | INFO     |  -- lfn=log.45758332._000068.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 04:39:12] 2025-07-28 02:38:30,591 | INFO     | stage-out finished correctly
[2025-07-28 04:39:12] 2025-07-28 02:38:32,564 | INFO     | monitor loop #282: job 0:6745938910 is in state 'finished'
[2025-07-28 04:39:12] 2025-07-28 02:38:32,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:39:12] 2025-07-28 02:38:33,653 | INFO     | PID=3871865 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 04:39:12] 2025-07-28 02:38:33,653 | INFO     | .. there are 2 such processes running
[2025-07-28 04:39:12] 2025-07-28 02:38:33,901 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 04:39:12] 2025-07-28 02:38:35,067 | INFO     | monitor loop #283: job 0:6745938910 is in state 'finished'
[2025-07-28 04:39:12] 2025-07-28 02:38:35,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:39:12] 2025-07-28 02:38:35,721 | INFO     | job 6745938910 has state=finished
[2025-07-28 04:39:12] 2025-07-28 02:38:35,722 | INFO     | preparing for final server update for job 6745938910 in state='finished'
[2025-07-28 04:39:12] 2025-07-28 02:38:36,407 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 04:39:12] 2025-07-28 02:38:36,407 | INFO     | this job has now completed (state=finished)
[2025-07-28 04:39:12] 2025-07-28 02:38:36,408 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 04:39:12] 2025-07-28 02:38:36,408 | INFO     | log transfer has been attempted: DONE
[2025-07-28 04:39:12] 2025-07-28 02:38:36,408 | INFO     | job 6745938910 has finished - writing final server update
[2025-07-28 04:39:12] 2025-07-28 02:38:36,408 | INFO     | total number of processed events: 400 (read)
[2025-07-28 04:39:12] 2025-07-28 02:38:36,409 | INFO     | executing command: lscpu
[2025-07-28 04:39:12] 2025-07-28 02:38:36,438 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 04:39:12] 2025-07-28 02:38:37,570 | INFO     | monitor loop #284: job 0:6745938910 is in state 'finished'
[2025-07-28 04:39:12] 2025-07-28 02:38:37,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:39:12] 2025-07-28 02:38:39,662 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 04:39:12] 2025-07-28 02:38:39,669 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2760.9613437499997
[2025-07-28 04:39:12] 2025-07-28 02:38:39,675 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6745938910/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:39:12] 2025-07-28 02:38:39,676 | INFO     | extracted standard info from prmon json
[2025-07-28 04:39:12] 2025-07-28 02:38:39,676 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 04:39:12] 2025-07-28 02:38:39,676 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 04:39:12] 2025-07-28 02:38:39,676 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 04:39:12] 2025-07-28 02:38:39,676 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 04:39:12] 2025-07-28 02:38:39,678 | INFO     | fitting pss+swap vs Time
[2025-07-28 04:39:12] 2025-07-28 02:38:39,678 | INFO     | sum of square deviations: 48810217.5
[2025-07-28 04:39:12] 2025-07-28 02:38:39,678 | INFO     | sum of deviations: -4180307674.0
[2025-07-28 04:39:12] 2025-07-28 02:38:39,678 | INFO     | mean x: 1753668538.5
[2025-07-28 04:39:12] 2025-07-28 02:38:39,678 | INFO     | mean y: 2835348.5185185187
[2025-07-28 04:39:12] 2025-07-28 02:38:39,678 | INFO     | -- intersect: 150194217903.69592
[2025-07-28 04:39:12] 2025-07-28 02:38:39,678 | INFO     | intersect: 150194217903.69592
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | chi2: 0.020378865354959114
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | -- intersect: 150194217903.69592
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | current memory leak: -85.64 B/s (using 54 data points, chi2=0.02)
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | could have reported an average CPU frequency of 2779 MHz (6 samples)
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | ..............................
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | . Timing measurements:
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | . get job = 0 s
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | . initial setup = 1 s
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | . payload setup = 5 s
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | . stage-in = 0 s
[2025-07-28 04:39:12] 2025-07-28 02:38:39,679 | INFO     | . payload execution = 3692 s
[2025-07-28 04:39:12] 2025-07-28 02:38:39,680 | INFO     | . stage-out = 0 s
[2025-07-28 04:39:12] 2025-07-28 02:38:39,680 | INFO     | . log creation = 0 s
[2025-07-28 04:39:12] 2025-07-28 02:38:39,680 | INFO     | ..............................
[2025-07-28 04:39:12] 2025-07-28 02:38:39,752 | INFO     | 
[2025-07-28 04:39:12] 2025-07-28 02:38:39,752 | INFO     | job summary report
[2025-07-28 04:39:12] 2025-07-28 02:38:39,752 | INFO     | --------------------------------------------------
[2025-07-28 04:39:12] 2025-07-28 02:38:39,752 | INFO     | PanDA job id: 6745938910
[2025-07-28 04:39:12] 2025-07-28 02:38:39,752 | INFO     | task id: 45758332
[2025-07-28 04:39:12] 2025-07-28 02:38:39,752 | INFO     | errors: (none)
[2025-07-28 04:39:12] 2025-07-28 02:38:39,752 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 04:39:12] 2025-07-28 02:38:39,752 | INFO     | pilot state: finished 
[2025-07-28 04:39:12] 2025-07-28 02:38:39,752 | INFO     | transexitcode: 0
[2025-07-28 04:39:12] 2025-07-28 02:38:39,753 | INFO     | exeerrorcode: 0
[2025-07-28 04:39:12] 2025-07-28 02:38:39,753 | INFO     | exeerrordiag: 
[2025-07-28 04:39:12] 2025-07-28 02:38:39,753 | INFO     | exitcode: 0
[2025-07-28 04:39:12] 2025-07-28 02:38:39,753 | INFO     | exitmsg: OK
[2025-07-28 04:39:12] 2025-07-28 02:38:39,753 | INFO     | cpuconsumptiontime: 39628 s
[2025-07-28 04:39:12] 2025-07-28 02:38:39,753 | INFO     | nevents: 400
[2025-07-28 04:39:12] 2025-07-28 02:38:39,753 | INFO     | neventsw: 0
[2025-07-28 04:39:12] 2025-07-28 02:38:39,753 | INFO     | pid: 3878608
[2025-07-28 04:39:12] 2025-07-28 02:38:39,753 | INFO     | pgrp: 3878608
[2025-07-28 04:39:12] 2025-07-28 02:38:39,754 | INFO     | corecount: 12
[2025-07-28 04:39:12] 2025-07-28 02:38:39,754 | INFO     | event service: False
[2025-07-28 04:39:12] 2025-07-28 02:38:39,754 | INFO     | sizes: {0: 2397471, 4: 2397733, 11: 2397761, 3702: 2423579, 3703: 2432579, 3707: 2432635, 3712: 2432957}
[2025-07-28 04:39:12] 2025-07-28 02:38:39,754 | INFO     | --------------------------------------------------
[2025-07-28 04:39:12] 2025-07-28 02:38:39,754 | INFO     | 
[2025-07-28 04:39:12] 2025-07-28 02:38:39,754 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-07-28 04:39:12] 2025-07-28 02:38:39,771 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,771 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,772 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,772 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,772 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,772 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,773 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 04:39:12] 2025-07-28 02:38:39,773 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,773 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 04:39:12] 2025-07-28 02:38:39,774 | INFO     | job 6745938910 has completed (purged errors)
[2025-07-28 04:39:12] 2025-07-28 02:38:39,774 | INFO     | overall cleanup function is called
[2025-07-28 04:39:12] 2025-07-28 02:38:40,783 | INFO     | --- collectZombieJob: --- 10, [3878608]
[2025-07-28 04:39:12] 2025-07-28 02:38:40,783 | INFO     | zombie collector waiting for pid 3878608
[2025-07-28 04:39:12] 2025-07-28 02:38:40,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 04:39:12] 2025-07-28 02:38:40,783 | INFO     | collected zombie processes
[2025-07-28 04:39:12] 2025-07-28 02:38:40,784 | INFO     | will attempt to kill all subprocesses of pid=3878608
[2025-07-28 04:39:12] 2025-07-28 02:38:40,929 | INFO     | process IDs to be killed: [3878608] (in reverse order)
[2025-07-28 04:39:12] 2025-07-28 02:38:40,975 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 04:39:12] 2025-07-28 02:38:40,975 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 04:39:12] 2025-07-28 02:38:40,979 | INFO     | did not find any defunct processes belonging to 3878608
[2025-07-28 04:39:12] 2025-07-28 02:38:40,983 | INFO     | did not find any defunct processes belonging to 3878608
[2025-07-28 04:39:12] 2025-07-28 02:38:40,983 | INFO     | ready for new job
[2025-07-28 04:39:12] 2025-07-28 02:38:40,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 04:39:12] 2025-07-28 02:38:40,984 | INFO     | ***************************************
[2025-07-28 04:39:12] 2025-07-28 02:38:40,984 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 04:39:12] 2025-07-28 02:38:40,984 | INFO     | ***************************************
[2025-07-28 04:39:12] 2025-07-28 02:38:40,984 | INFO     | 
[2025-07-28 04:39:12] 2025-07-28 02:38:40,986 | INFO     | architecture information:
[2025-07-28 04:39:12] 2025-07-28 02:38:40,986 | INFO     | executing command: cat /etc/os-release
[2025-07-28 04:39:12] 2025-07-28 02:38:41,000 | INFO     | cat /etc/os-release:
[2025-07-28 04:39:12] NAME="CentOS Linux"
[2025-07-28 04:39:12] VERSION="7 (Core)"
[2025-07-28 04:39:12] ID="centos"
[2025-07-28 04:39:12] ID_LIKE="rhel fedora"
[2025-07-28 04:39:12] VERSION_ID="7"
[2025-07-28 04:39:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 04:39:12] ANSI_COLOR="0;31"
[2025-07-28 04:39:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 04:39:12] HOME_URL="https://www.centos.org/"
[2025-07-28 04:39:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 04:39:12] 
[2025-07-28 04:39:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 04:39:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 04:39:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 04:39:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 04:39:12] 
[2025-07-28 04:39:12] 2025-07-28 02:38:41,000 | INFO     | ***************************************
[2025-07-28 04:39:12] 2025-07-28 02:38:41,503 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-07-28 04:39:12] 2025-07-28 02:38:41,517 | INFO     | sufficient remaining disk space (708167335936 B)
[2025-07-28 04:39:12] 2025-07-28 02:38:41,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 04:39:12] 2025-07-28 02:38:41,517 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 04:39:12] 2025-07-28 02:38:41,517 | INFO     | update_server=False
[2025-07-28 04:39:12] 2025-07-28 02:38:41,517 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 04:39:12] 2025-07-28 02:38:41,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:39:12] 2025-07-28 02:38:41,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:39:12] 2025-07-28 02:38:41,518 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 04:39:12] 2025-07-28 02:38:41,518 | INFO     | all payload control threads have been joined
[2025-07-28 04:39:12] 2025-07-28 02:38:41,518 | INFO     | aborting loop
[2025-07-28 04:39:12] 2025-07-28 02:38:41,523 | INFO     | all data control threads have been joined
[2025-07-28 04:39:12] 2025-07-28 02:38:42,523 | INFO     | [job] retrieve thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:42,524 | INFO     | [job] queue monitor thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:42,524 | INFO     | [payload] control thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:42,525 | INFO     | [job] job monitor thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:42,528 | INFO     | [data] control thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:42,610 | INFO     | [data] copytool_in thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:42,800 | INFO     | [payload] validate_post thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:42,882 | INFO     | all job control threads have been joined
[2025-07-28 04:39:12] 2025-07-28 02:38:43,181 | INFO     | [job] validate thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:43,373 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:43,391 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:43,415 | INFO     | [payload] failed_post thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:43,524 | INFO     | [data] copytool_out thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:43,544 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:43,885 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:43,887 | INFO     | [job] control thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:44,478 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 04:39:12] 2025-07-28 02:38:48,484 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 04:39:12] 2025-07-28 02:38:48,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331452282688)>', '<ExcThread(monitor, started 140331102217984)>']
[2025-07-28 04:39:12] 2025-07-28 02:38:53,927 | INFO     | all workflow threads have been joined
[2025-07-28 04:39:12] 2025-07-28 02:38:53,928 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 04:39:12] 2025-07-28 02:38:53,928 | INFO     | traces error code: 0
[2025-07-28 04:39:12] 2025-07-28 02:38:53,928 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 04:39:12] 2025-07-28 02:39:11,926 | INFO     | PID=3871865 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 04:39:12] 2025-07-28 02:39:11,926 | INFO     | .. there are 2 such processes running
[2025-07-28 04:39:12] 2025-07-28 02:39:11,926 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 04:39:12] 2025-07-28 02:39:11,926 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 04:39:12] 2025-07-28 02:39:11,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 04:39:12] 2025-07-28 02:39:11,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 04:39:12] 2025-07-28 02:39:11,926 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 04:39:12] 2025-07-28 02:39:11,927 | INFO     | [monitor] control thread has ended
[2025-07-28 04:39:12] 2025-07-28 02:39:12,032 [wrapper] ==== pilot stdout END ====
[2025-07-28 04:39:12] 2025-07-28 02:39:12,035 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 04:39:12] 2025-07-28 02:39:12,038 [wrapper] pilotpid: 3871865
[2025-07-28 04:39:12] 2025-07-28 02:39:12,041 [wrapper] Pilot exit status: 0
[2025-07-28 04:39:12] 2025-07-28 02:39:12,052 [wrapper] pandaids: 6745938910
[2025-07-28 04:39:12] 2025-07-28 02:39:12,086 [wrapper] cleanup supervisor_pilot 3935335 3871866
[2025-07-28 04:39:12] 2025-07-28 02:39:12,089 [wrapper] Test setup, not cleaning
[2025-07-28 04:39:12] 2025-07-28 02:39:12,092 [wrapper] apfmon messages muted
[2025-07-28 04:39:12] 2025-07-28 02:39:12,094 [wrapper] ==== wrapper stdout END ====
[2025-07-28 04:39:12] 2025-07-28 02:39:12,097 [wrapper] ==== wrapper stderr END ====
[2025-07-28 04:39:12]  *** Error codes and diagnostics ***
[2025-07-28 04:39:12]     "exeErrorCode": 0,
[2025-07-28 04:39:12]     "exeErrorDiag": "",
[2025-07-28 04:39:12]     "pilotErrorCode": 0,
[2025-07-28 04:39:12]     "pilotErrorDiag": "",
[2025-07-28 04:39:12]  *** Listing of results directory ***
[2025-07-28 04:39:12] total 407612
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc    530466 Jul 27 02:36 pilot3.tar.gz
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc      5112 Jul 27 03:00 queuedata.json
[2025-07-28 04:39:12] -rwx------ 1 boinc boinc     36292 Jul 27 03:01 runpilot2-wrapper.sh
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc       100 Jul 28 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 04:39:12] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 03:36 run_atlas
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc       105 Jul 28 03:36 job.xml
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc      6523 Jul 28 03:36 init_data.xml
[2025-07-28 04:39:12] -rw-r--r-- 2 boinc boinc 241911744 Jul 28 03:36 EVNT.45758330._000004.pool.root.1
[2025-07-28 04:39:12] drwxrwx--x 2 boinc boinc      4096 Jul 28 03:36 shared
[2025-07-28 04:39:12] -rw-r--r-- 2 boinc boinc    542885 Jul 28 03:36 input.tar.gz
[2025-07-28 04:39:12] -rw-r--r-- 2 boinc boinc     15095 Jul 28 03:36 start_atlas.sh
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc         0 Jul 28 03:36 boinc_lockfile
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc      2563 Jul 28 03:36 pandaJob.out
[2025-07-28 04:39:12] -rw------- 1 boinc boinc    980125 Jul 28 03:36 agis_schedconf.cvmfs.json
[2025-07-28 04:39:12] -rw------- 1 boinc boinc   1593052 Jul 28 03:36 agis_ddmendpoints.agis.ALL.json
[2025-07-28 04:39:12] drwx------ 4 boinc boinc      4096 Jul 28 03:36 pilot3
[2025-07-28 04:39:12] -rw------- 1 boinc boinc 170106923 Jul 28 04:38 HITS.45758332._000068.pool.root.1
[2025-07-28 04:39:12] -rw------- 1 boinc boinc        95 Jul 28 04:38 pilot_heartbeat.json
[2025-07-28 04:39:12] -rw------- 1 boinc boinc      1014 Jul 28 04:38 memory_monitor_summary.json
[2025-07-28 04:39:12] -rw------- 1 boinc boinc    362541 Jul 28 04:38 log.45758332._000068.job.log.tgz.1
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc       529 Jul 28 04:38 boinc_task_state.xml
[2025-07-28 04:39:12] -rw------- 1 boinc boinc      7761 Jul 28 04:38 heartbeat.json
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc      8192 Jul 28 04:39 boinc_mmap_file
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc        27 Jul 28 04:39 wrapper_checkpoint.txt
[2025-07-28 04:39:12] -rw------- 1 boinc boinc       892 Jul 28 04:39 pilotlog.txt
[2025-07-28 04:39:12] -rw------- 1 boinc boinc    384612 Jul 28 04:39 log.45758332._000068.job.log.1
[2025-07-28 04:39:12] -rw------- 1 boinc boinc       357 Jul 28 04:39 output.list
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc       620 Jul 28 04:39 runtime_log
[2025-07-28 04:39:12] -rw------- 1 boinc boinc    768000 Jul 28 04:39 result.tar.gz
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc      8721 Jul 28 04:39 runtime_log.err
[2025-07-28 04:39:12] -rw------- 1 boinc boinc       663 Jul 28 04:39 eOuLDmvw4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfjTLDmPUYzrm.diag
[2025-07-28 04:39:12] -rw-r--r-- 1 boinc boinc     21977 Jul 28 04:39 stderr.txt
[2025-07-28 04:39:12] HITS file was successfully produced:
[2025-07-28 04:39:12] -rw------- 1 boinc boinc 170106923 Jul 28 04:38 shared/HITS.pool.root.1
[2025-07-28 04:39:12]  *** Contents of shared directory: ***
[2025-07-28 04:39:12] total 403676
[2025-07-28 04:39:12] -rw-r--r-- 2 boinc boinc 241911744 Jul 28 03:36 ATLAS.root_0
[2025-07-28 04:39:12] -rw-r--r-- 2 boinc boinc    542885 Jul 28 03:36 input.tar.gz
[2025-07-28 04:39:12] -rw-r--r-- 2 boinc boinc     15095 Jul 28 03:36 start_atlas.sh
[2025-07-28 04:39:12] -rw------- 1 boinc boinc 170106923 Jul 28 04:38 HITS.pool.root.1
[2025-07-28 04:39:12] -rw------- 1 boinc boinc    768000 Jul 28 04:39 result.tar.gz
04:39:13 (3868091): run_atlas exited; CPU time 39675.159667
04:39:13 (3868091): called boinc_finish(0)

</stderr_txt>
]]>

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