Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:31:21 (3882570): wrapper (7.7.26015): starting
03:31:21 (3882570): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:31:21] Arguments: --nthreads 12
[2025-07-27 03:31:21] Threads: 12
[2025-07-27 03:31:21] Checking for CVMFS
[2025-07-27 03:31:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:31:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:31:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:31:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:31:21] 2.13.0.0 3608313 18067 294512 148804 0 64 30634193 32935937 7395 16776704 0 47719563 99.716 69996988 27114 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 03:31:21] CVMFS is ok
[2025-07-27 03:31:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:31:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:31:21] Further information can be found at the LHC@home message board.
[2025-07-27 03:31:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:31:21] Checking for apptainer binary...
[2025-07-27 03:31:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:31:21] Running /usr/bin/apptainer --version
[2025-07-27 03:31:21] apptainer version 1.4.1-1.el9
[2025-07-27 03:31:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:31:21] c6-6-39-3.aglt2.org
[2025-07-27 03:31:21] apptainer works
[2025-07-27 03:31:21] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:31:21] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:31:21] Starting ATLAS job with PandaID=6745918505
[2025-07-27 03:31:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:53:14]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:53:14]  lfn=log.45758877._000098.job.log.tgz.1
[2025-07-27 04:53:14]  mtime=0
[2025-07-27 04:53:14]  protocol_id=None
[2025-07-27 04:53:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 04:53:14]  replicas=None
[2025-07-27 04:53:14]  scope=mc23_13p6TeV
[2025-07-27 04:53:14]  status=None
[2025-07-27 04:53:14]  status_code=0
[2025-07-27 04:53:14]  storage_token=
[2025-07-27 04:53:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745918505/log.45758877._000098.job.log.tgz.1
[2025-07-27 04:53:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/a8/log.45758877._000098.job.log.tgz.1
[2025-07-27 04:53:14]  workdir=None
[2025-07-27 04:53:14] ]
[2025-07-27 04:53:14] 2025-07-27 08:52:32,755 | INFO     | transferring file log.45758877._000098.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745918505/log.45758877._000098.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:53:14] 2025-07-27 08:52:32,756 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745918505/log.45758877._000098.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758877._000098.job
[2025-07-27 04:53:14] 2025-07-27 08:52:32,775 | INFO     | adding to output.list: log.45758877._000098.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/a8/log.45758877._000098.job.log.tg
[2025-07-27 04:53:14] 2025-07-27 08:52:32,777 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:53:14] 2025-07-27 08:52:32,777 | INFO     | summary of transferred files:
[2025-07-27 04:53:14] 2025-07-27 08:52:32,777 | INFO     |  -- lfn=log.45758877._000098.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:53:14] 2025-07-27 08:52:32,777 | INFO     | stage-out finished correctly
[2025-07-27 04:53:14] 2025-07-27 08:52:35,196 | INFO     | monitor loop #363: job 0:6745918505 is in state 'finished'
[2025-07-27 04:53:14] 2025-07-27 08:52:35,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:53:14] 2025-07-27 08:52:35,880 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:53:14] 2025-07-27 08:52:36,331 | INFO     | job 6745918505 has state=finished
[2025-07-27 04:53:14] 2025-07-27 08:52:36,331 | INFO     | preparing for final server update for job 6745918505 in state='finished'
[2025-07-27 04:53:14] 2025-07-27 08:52:36,331 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:53:14] 2025-07-27 08:52:36,331 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:53:14] 2025-07-27 08:52:36,331 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:53:14] 2025-07-27 08:52:36,332 | INFO     | job 6745918505 has finished - writing final server update
[2025-07-27 04:53:14] 2025-07-27 08:52:36,332 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:53:14] 2025-07-27 08:52:36,333 | INFO     | executing command: lscpu
[2025-07-27 04:53:14] 2025-07-27 08:52:36,395 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:53:14] 2025-07-27 08:52:37,700 | INFO     | monitor loop #364: job 0:6745918505 is in state 'finished'
[2025-07-27 04:53:14] 2025-07-27 08:52:37,700 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:53:14] 2025-07-27 08:52:40,202 | INFO     | monitor loop #365: job 0:6745918505 is in state 'finished'
[2025-07-27 04:53:14] 2025-07-27 08:52:40,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:53:14] 2025-07-27 08:52:41,232 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 04:53:14] 2025-07-27 08:52:41,240 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2956.689375000001
[2025-07-27 04:53:14] 2025-07-27 08:52:41,249 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745918505/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:53:14] 2025-07-27 08:52:41,250 | INFO     | extracted standard info from prmon json
[2025-07-27 04:53:14] 2025-07-27 08:52:41,250 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:53:14] 2025-07-27 08:52:41,250 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:53:14] 2025-07-27 08:52:41,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:53:14] 2025-07-27 08:52:41,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:53:14] 2025-07-27 08:52:41,253 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:53:14] 2025-07-27 08:52:41,253 | INFO     | sum of square deviations: 120605052.0
[2025-07-27 04:53:14] 2025-07-27 08:52:41,254 | INFO     | sum of deviations: -15779092832.999998
[2025-07-27 04:53:14] 2025-07-27 08:52:41,254 | INFO     | mean x: 1753604024.0
[2025-07-27 04:53:14] 2025-07-27 08:52:41,254 | INFO     | mean y: 2599686.02739726
[2025-07-27 04:53:14] 2025-07-27 08:52:41,254 | INFO     | -- intersect: 229431468777.00345
[2025-07-27 04:53:14] 2025-07-27 08:52:41,254 | INFO     | intersect: 229431468777.00345
[2025-07-27 04:53:14] 2025-07-27 08:52:41,254 | INFO     | chi2: 0.1678592864774531
[2025-07-27 04:53:14] 2025-07-27 08:52:41,254 | INFO     | -- intersect: 229431468777.00345
[2025-07-27 04:53:14] 2025-07-27 08:52:41,255 | INFO     | current memory leak: -130.83 B/s (using 73 data points, chi2=0.17)
[2025-07-27 04:53:14] 2025-07-27 08:52:41,255 | INFO     | could have reported an average CPU frequency of 2940 MHz (6 samples)
[2025-07-27 04:53:14] 2025-07-27 08:52:41,255 | INFO     | ..............................
[2025-07-27 04:53:14] 2025-07-27 08:52:41,255 | INFO     | . Timing measurements:
[2025-07-27 04:53:14] 2025-07-27 08:52:41,255 | INFO     | . get job = 0 s
[2025-07-27 04:53:14] 2025-07-27 08:52:41,256 | INFO     | . initial setup = 2 s
[2025-07-27 04:53:14] 2025-07-27 08:52:41,256 | INFO     | . payload setup = 7 s
[2025-07-27 04:53:14] 2025-07-27 08:52:41,256 | INFO     | . stage-in = 0 s
[2025-07-27 04:53:14] 2025-07-27 08:52:41,256 | INFO     | . payload execution = 4830 s
[2025-07-27 04:53:14] 2025-07-27 08:52:41,256 | INFO     | . stage-out = 0 s
[2025-07-27 04:53:14] 2025-07-27 08:52:41,256 | INFO     | . log creation = 0 s
[2025-07-27 04:53:14] 2025-07-27 08:52:41,256 | INFO     | ..............................
[2025-07-27 04:53:14] 2025-07-27 08:52:41,678 | INFO     | 
[2025-07-27 04:53:14] 2025-07-27 08:52:41,679 | INFO     | job summary report
[2025-07-27 04:53:14] 2025-07-27 08:52:41,679 | INFO     | --------------------------------------------------
[2025-07-27 04:53:14] 2025-07-27 08:52:41,679 | INFO     | PanDA job id: 6745918505
[2025-07-27 04:53:14] 2025-07-27 08:52:41,679 | INFO     | task id: 45758877
[2025-07-27 04:53:14] 2025-07-27 08:52:41,679 | INFO     | errors: (none)
[2025-07-27 04:53:14] 2025-07-27 08:52:41,679 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:53:14] 2025-07-27 08:52:41,679 | INFO     | pilot state: finished 
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | transexitcode: 0
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | exeerrorcode: 0
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | exeerrordiag: 
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | exitcode: 0
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | exitmsg: OK
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | cpuconsumptiontime: 52744 s
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | nevents: 400
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | neventsw: 0
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | pid: 3895757
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | pgrp: 3895757
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | corecount: 12
[2025-07-27 04:53:14] 2025-07-27 08:52:41,680 | INFO     | event service: False
[2025-07-27 04:53:14] 2025-07-27 08:52:41,681 | INFO     | sizes: {0: 2397313, 1: 2397512, 6: 2397774, 12: 2397802, 4842: 2423958, 4843: 2432956, 4846: 2433140, 4851: 2433334}
[2025-07-27 04:53:14] 2025-07-27 08:52:41,681 | INFO     | --------------------------------------------------
[2025-07-27 04:53:14] 2025-07-27 08:52:41,681 | INFO     | 
[2025-07-27 04:53:14] 2025-07-27 08:52:41,681 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 04:53:14] 2025-07-27 08:52:41,705 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,706 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,706 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,706 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,706 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,706 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:53:14] 2025-07-27 08:52:41,707 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,708 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:53:14] 2025-07-27 08:52:41,708 | INFO     | job 6745918505 has completed (purged errors)
[2025-07-27 04:53:14] 2025-07-27 08:52:41,708 | INFO     | overall cleanup function is called
[2025-07-27 04:53:14] 2025-07-27 08:52:42,715 | INFO     | --- collectZombieJob: --- 10, [3895757]
[2025-07-27 04:53:14] 2025-07-27 08:52:42,716 | INFO     | zombie collector waiting for pid 3895757
[2025-07-27 04:53:14] 2025-07-27 08:52:42,717 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:53:14] 2025-07-27 08:52:42,717 | INFO     | collected zombie processes
[2025-07-27 04:53:14] 2025-07-27 08:52:42,717 | INFO     | will attempt to kill all subprocesses of pid=3895757
[2025-07-27 04:53:14] 2025-07-27 08:52:43,090 | INFO     | process IDs to be killed: [3895757] (in reverse order)
[2025-07-27 04:53:14] 2025-07-27 08:52:43,209 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:53:14] 2025-07-27 08:52:43,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:53:14] 2025-07-27 08:52:43,225 | INFO     | did not find any defunct processes belonging to 3895757
[2025-07-27 04:53:14] 2025-07-27 08:52:43,240 | INFO     | did not find any defunct processes belonging to 3895757
[2025-07-27 04:53:14] 2025-07-27 08:52:43,240 | INFO     | ready for new job
[2025-07-27 04:53:14] 2025-07-27 08:52:43,241 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:53:14] 2025-07-27 08:52:43,243 | INFO     | ***************************************
[2025-07-27 04:53:14] 2025-07-27 08:52:43,244 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:53:14] 2025-07-27 08:52:43,244 | INFO     | ***************************************
[2025-07-27 04:53:14] 2025-07-27 08:52:43,244 | INFO     | 
[2025-07-27 04:53:14] 2025-07-27 08:52:43,260 | INFO     | architecture information:
[2025-07-27 04:53:14] 2025-07-27 08:52:43,261 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:53:14] 2025-07-27 08:52:43,278 | INFO     | cat /etc/os-release:
[2025-07-27 04:53:14] NAME="CentOS Linux"
[2025-07-27 04:53:14] VERSION="7 (Core)"
[2025-07-27 04:53:14] ID="centos"
[2025-07-27 04:53:14] ID_LIKE="rhel fedora"
[2025-07-27 04:53:14] VERSION_ID="7"
[2025-07-27 04:53:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:53:14] ANSI_COLOR="0;31"
[2025-07-27 04:53:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:53:14] HOME_URL="https://www.centos.org/"
[2025-07-27 04:53:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:53:14] 
[2025-07-27 04:53:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:53:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:53:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:53:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:53:14] 
[2025-07-27 04:53:14] 2025-07-27 08:52:43,279 | INFO     | ***************************************
[2025-07-27 04:53:14] 2025-07-27 08:52:43,781 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 04:53:14] 2025-07-27 08:52:43,801 | INFO     | sufficient remaining disk space (73645686784 B)
[2025-07-27 04:53:14] 2025-07-27 08:52:43,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:53:14] 2025-07-27 08:52:43,802 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:53:14] 2025-07-27 08:52:43,802 | INFO     | update_server=False
[2025-07-27 04:53:14] 2025-07-27 08:52:43,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:53:14] 2025-07-27 08:52:43,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:53:14] 2025-07-27 08:52:43,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:53:14] 2025-07-27 08:52:43,804 | INFO     | aborting loop
[2025-07-27 04:53:14] 2025-07-27 08:52:43,912 | INFO     | all job control threads have been joined
[2025-07-27 04:53:14] 2025-07-27 08:52:44,313 | INFO     | all payload control threads have been joined
[2025-07-27 04:53:14] 2025-07-27 08:52:44,420 | INFO     | all data control threads have been joined
[2025-07-27 04:53:14] 2025-07-27 08:52:44,807 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:44,809 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:44,810 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:44,919 | INFO     | [job] control thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:45,204 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:45,319 | INFO     | [payload] control thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:45,425 | INFO     | [data] control thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:45,677 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:45,688 | INFO     | [job] validate thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:45,762 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:45,808 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:45,873 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:46,100 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:46,186 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:46,343 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:53:14] 2025-07-27 08:52:46,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:53:14] 2025-07-27 08:52:47,349 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:50,473 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:53:14] 2025-07-27 08:52:50,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502869489472)>', '<ExcThread(monitor, started 140502355646208)>']
[2025-07-27 04:53:14] 2025-07-27 08:52:55,815 | INFO     | all workflow threads have been joined
[2025-07-27 04:53:14] 2025-07-27 08:52:55,816 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:53:14] 2025-07-27 08:52:55,816 | INFO     | traces error code: 0
[2025-07-27 04:53:14] 2025-07-27 08:52:55,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:53:14] 2025-07-27 08:53:14,119 | INFO     | PID=3887168 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 04:53:14] 2025-07-27 08:53:14,120 | INFO     | .. there are 11 such processes running
[2025-07-27 04:53:14] 2025-07-27 08:53:14,122 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:53:14] 2025-07-27 08:53:14,122 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:53:14] 2025-07-27 08:53:14,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:53:14] 2025-07-27 08:53:14,122 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:53:14] 2025-07-27 08:53:14,123 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 04:53:14] 2025-07-27 08:53:14,123 | INFO     | [monitor] control thread has ended
[2025-07-27 04:53:14] 2025-07-27 08:53:14,349 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:53:14] 2025-07-27 08:53:14,354 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:53:14] 2025-07-27 08:53:14,357 [wrapper] pilotpid: 3887168
[2025-07-27 04:53:14] 2025-07-27 08:53:14,361 [wrapper] Pilot exit status: 0
[2025-07-27 04:53:14] 2025-07-27 08:53:14,374 [wrapper] pandaids: 6745918505
[2025-07-27 04:53:14] 2025-07-27 08:53:14,455 [wrapper] cleanup supervisor_pilot    3953 3887169
[2025-07-27 04:53:14] 2025-07-27 08:53:14,458 [wrapper] Test setup, not cleaning
[2025-07-27 04:53:14] 2025-07-27 08:53:14,462 [wrapper] apfmon messages muted
[2025-07-27 04:53:14] 2025-07-27 08:53:14,466 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:53:14] 2025-07-27 08:53:14,470 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:53:14]  *** Error codes and diagnostics ***
[2025-07-27 04:53:14]     "exeErrorCode": 0,
[2025-07-27 04:53:14]     "exeErrorDiag": "",
[2025-07-27 04:53:14]     "pilotErrorCode": 0,
[2025-07-27 04:53:14]     "pilotErrorDiag": "",
[2025-07-27 04:53:14]  *** Listing of results directory ***
[2025-07-27 04:53:14] total 407708
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:58 pilot3.tar.gz
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:26 queuedata.json
[2025-07-27 04:53:14] -rwx------. 1 boincer umatlas     36292 Jul 26 20:26 runpilot2-wrapper.sh
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas       100 Jul 27 03:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:53:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 03:31 run_atlas
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas       105 Jul 27 03:31 job.xml
[2025-07-27 04:53:14] -rw-r--r--. 2 boincer umatlas 242467017 Jul 27 03:31 EVNT.45758875._000004.pool.root.1
[2025-07-27 04:53:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:31 start_atlas.sh
[2025-07-27 04:53:14] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 03:31 shared
[2025-07-27 04:53:14] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 03:31 input.tar.gz
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas         0 Jul 27 03:31 boinc_lockfile
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas      2577 Jul 27 03:31 pandaJob.out
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas    980125 Jul 27 03:31 agis_schedconf.cvmfs.json
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas   1593052 Jul 27 03:31 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:53:14] drwx------. 4 boincer umatlas      4096 Jul 27 03:31 pilot3
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas      6840 Jul 27 04:48 init_data.xml
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas 169422881 Jul 27 04:51 HITS.45758877._000098.pool.root.1
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas       529 Jul 27 04:52 boinc_task_state.xml
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas      1035 Jul 27 04:52 memory_monitor_summary.json
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas    381924 Jul 27 04:52 log.45758877._000098.job.log.tgz.1
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas      7816 Jul 27 04:52 heartbeat.json
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas        27 Jul 27 04:53 wrapper_checkpoint.txt
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 04:53 boinc_mmap_file
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas        95 Jul 27 04:53 pilot_heartbeat.json
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas       893 Jul 27 04:53 pilotlog.txt
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas    483260 Jul 27 04:53 log.45758877._000098.job.log.1
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas       357 Jul 27 04:53 output.list
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:53 runtime_log
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas    880640 Jul 27 04:53 result.tar.gz
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 04:53 runtime_log.err
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas       653 Jul 27 04:53 nB0NDm5O4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYdTLDmihKDvn.diag
[2025-07-27 04:53:14] -rw-r--r--. 1 boincer umatlas     21676 Jul 27 04:53 stderr.txt
[2025-07-27 04:53:14] HITS file was successfully produced:
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas 169422881 Jul 27 04:51 shared/HITS.pool.root.1
[2025-07-27 04:53:14]  *** Contents of shared directory: ***
[2025-07-27 04:53:14] total 403656
[2025-07-27 04:53:14] -rw-r--r--. 2 boincer umatlas 242467017 Jul 27 03:31 ATLAS.root_0
[2025-07-27 04:53:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:31 start_atlas.sh
[2025-07-27 04:53:14] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 03:31 input.tar.gz
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas 169422881 Jul 27 04:51 HITS.pool.root.1
[2025-07-27 04:53:14] -rw-------. 1 boincer umatlas    880640 Jul 27 04:53 result.tar.gz
04:53:16 (3882570): run_atlas exited; CPU time 52785.142243
04:53:16 (3882570): called boinc_finish(0)

</stderr_txt>
]]>

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