Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:37:49 (1754009): wrapper (7.7.26015): starting
01:37:49 (1754009): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 01:37:49] Arguments: --nthreads 8
[2025-07-27 01:37:49] Threads: 8
[2025-07-27 01:37:49] Checking for CVMFS
[2025-07-27 01:37:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 01:37:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 01:37:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 01:37:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 01:37:51] 2.13.1.0 87270 7770 210568 148801 2 375 21063379 40960000 19125 16776704 0 21530418 99.819 15806517 36107 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 01:37:51] CVMFS is ok
[2025-07-27 01:37:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 01:37:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 01:37:51] Further information can be found at the LHC@home message board.
[2025-07-27 01:37:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 01:37:51] Checking for apptainer binary...
[2025-07-27 01:37:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 01:37:51] Running /usr/bin/apptainer --version
[2025-07-27 01:37:51] apptainer version 1.4.1-1.el9
[2025-07-27 01:37:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 01:37:52] c-211-33-3.aglt2.org
[2025-07-27 01:37:52] apptainer works
[2025-07-27 01:37:52] Set ATHENA_PROC_NUMBER=8
[2025-07-27 01:37:52] Set ATHENA_CORE_NUMBER=8
[2025-07-27 01:37:52] Starting ATLAS job with PandaID=6745919142
[2025-07-27 01:37:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 10:28:41]  *** The last 200 lines of the pilot log: ***
[2025-07-27 10:28:41] 2025-07-27 14:28:05,165 | INFO     | PID=1758003 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 10:28:41] 2025-07-27 14:28:05,165 | INFO     | .. there are 15 such processes running
[2025-07-27 10:28:41] 2025-07-27 14:28:06,590 | INFO     | monitor loop #2022: job 0:6745919142 is in state 'finished'
[2025-07-27 10:28:41] 2025-07-27 14:28:06,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:28:41] 2025-07-27 14:28:06,684 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 10:28:41] 2025-07-27 14:28:06,769 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2570.9180208333332
[2025-07-27 10:28:41] 2025-07-27 14:28:06,906 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745919142/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 10:28:41] 2025-07-27 14:28:06,908 | INFO     | extracted standard info from prmon json
[2025-07-27 10:28:41] 2025-07-27 14:28:06,908 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 10:28:41] 2025-07-27 14:28:06,908 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 10:28:41] 2025-07-27 14:28:06,908 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 10:28:41] 2025-07-27 14:28:06,909 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 10:28:41] 2025-07-27 14:28:06,983 | INFO     | fitting pss+swap vs Time
[2025-07-27 10:28:41] 2025-07-27 14:28:06,985 | INFO     | sum of square deviations: 42848849340.23192
[2025-07-27 10:28:41] 2025-07-27 14:28:07,042 | INFO     | sum of deviations: 106490614574.54172
[2025-07-27 10:28:41] 2025-07-27 14:28:07,042 | INFO     | mean x: 1753610664.1508703
[2025-07-27 10:28:41] 2025-07-27 14:28:07,042 | INFO     | mean y: 2504835.352030948
[2025-07-27 10:28:41] 2025-07-27 14:28:07,042 | INFO     | -- intersect: -4355677011.425321
[2025-07-27 10:28:41] 2025-07-27 14:28:07,043 | INFO     | intersect: -4355677011.425321
[2025-07-27 10:28:41] 2025-07-27 14:28:07,043 | INFO     | chi2: 3.8477025891761785
[2025-07-27 10:28:41] 2025-07-27 14:28:07,044 | INFO     | sum of square deviations: 41617631440.11719
[2025-07-27 10:28:41] 2025-07-27 14:28:07,072 | INFO     | sum of deviations: 141936409058.4143
[2025-07-27 10:28:41] 2025-07-27 14:28:07,096 | INFO     | mean x: 1753610511.6523438
[2025-07-27 10:28:41] 2025-07-27 14:28:07,096 | INFO     | mean y: 2509189.73828125
[2025-07-27 10:28:41] 2025-07-27 14:28:07,096 | INFO     | -- intersect: -5978157424.342374
[2025-07-27 10:28:41] 2025-07-27 14:28:07,096 | INFO     | intersect: -5978157424.342374
[2025-07-27 10:28:41] 2025-07-27 14:28:07,096 | INFO     | chi2: 2.9802623931004386
[2025-07-27 10:28:41] 2025-07-27 14:28:07,097 | INFO     | current chi2=2.9802623931004386 (change=22.544367085852787 %)
[2025-07-27 10:28:41] 2025-07-27 14:28:07,097 | INFO     | right removable region: 511
[2025-07-27 10:28:41] 2025-07-27 14:28:07,097 | INFO     | sum of square deviations: 41617583860.11719
[2025-07-27 10:28:41] 2025-07-27 14:28:07,120 | INFO     | sum of deviations: -29545788665.164062
[2025-07-27 10:28:41] 2025-07-27 14:28:07,121 | INFO     | mean x: 1753610816.6523438
[2025-07-27 10:28:41] 2025-07-27 14:28:07,121 | INFO     | mean y: 2521657.38671875
[2025-07-27 10:28:41] 2025-07-27 14:28:07,121 | INFO     | -- intersect: 1247471743.002045
[2025-07-27 10:28:41] 2025-07-27 14:28:07,139 | INFO     | intersect: 1247471743.002045
[2025-07-27 10:28:41] 2025-07-27 14:28:07,140 | INFO     | chi2: 1.2096321494196358
[2025-07-27 10:28:41] 2025-07-27 14:28:07,141 | INFO     | current chi2=1.2096321494196358 (change=68.5622232648021 %)
[2025-07-27 10:28:41] 2025-07-27 14:28:07,141 | INFO     | sum of square deviations: 40410226107.90523
[2025-07-27 10:28:41] 2025-07-27 14:28:07,172 | INFO     | sum of deviations: -47434921118.6923
[2025-07-27 10:28:41] 2025-07-27 14:28:07,196 | INFO     | mean x: 1753610969.147929
[2025-07-27 10:28:41] 2025-07-27 14:28:07,196 | INFO     | mean y: 2523908.769230769
[2025-07-27 10:28:41] 2025-07-27 14:28:07,196 | INFO     | -- intersect: 2060973118.4392815
[2025-07-27 10:28:41] 2025-07-27 14:28:07,196 | INFO     | intersect: 2060973118.4392815
[2025-07-27 10:28:41] 2025-07-27 14:28:07,197 | INFO     | chi2: 1.1462100920414815
[2025-07-27 10:28:41] 2025-07-27 14:28:07,197 | INFO     | current chi2=1.1462100920414815 (change=5.243086289380066 %)
[2025-07-27 10:28:41] 2025-07-27 14:28:07,197 | INFO     | left removable region: 20
[2025-07-27 10:28:41] 2025-07-27 14:28:07,198 | INFO     | sum of square deviations: 36703947233.303474
[2025-07-27 10:28:41] 2025-07-27 14:28:07,241 | INFO     | sum of deviations: 20024161246.101837
[2025-07-27 10:28:41] 2025-07-27 14:28:07,242 | INFO     | mean x: 1753611091.1405296
[2025-07-27 10:28:41] 2025-07-27 14:28:07,242 | INFO     | mean y: 2524300.8391038696
[2025-07-27 10:28:41] 2025-07-27 14:28:07,242 | INFO     | -- intersect: -954173653.9816568
[2025-07-27 10:28:41] 2025-07-27 14:28:07,242 | INFO     | intersect: -954173653.9816568
[2025-07-27 10:28:41] 2025-07-27 14:28:07,243 | INFO     | chi2: 0.16394291875801176
[2025-07-27 10:28:41] 2025-07-27 14:28:07,243 | INFO     | -- intersect: -954173653.9816568
[2025-07-27 10:28:41] 2025-07-27 14:28:07,243 | INFO     | current memory leak: 0.55 B/s (using 491 data points, chi2=0.16)
[2025-07-27 10:28:41] 2025-07-27 14:28:07,245 | INFO     | could have reported an average CPU frequency of 2517 MHz (21 samples)
[2025-07-27 10:28:41] 2025-07-27 14:28:07,265 | INFO     | ..............................
[2025-07-27 10:28:41] 2025-07-27 14:28:07,266 | INFO     | . Timing measurements:
[2025-07-27 10:28:41] 2025-07-27 14:28:07,266 | INFO     | . get job = 1 s
[2025-07-27 10:28:41] 2025-07-27 14:28:07,266 | INFO     | . initial setup = 6 s
[2025-07-27 10:28:41] 2025-07-27 14:28:07,266 | INFO     | . payload setup = 58 s
[2025-07-27 10:28:41] 2025-07-27 14:28:07,266 | INFO     | . stage-in = 0 s
[2025-07-27 10:28:41] 2025-07-27 14:28:07,266 | INFO     | . payload execution = 31553 s
[2025-07-27 10:28:41] 2025-07-27 14:28:07,266 | INFO     | . stage-out = 5 s
[2025-07-27 10:28:41] 2025-07-27 14:28:07,266 | INFO     | . log creation = 1 s
[2025-07-27 10:28:41] 2025-07-27 14:28:07,266 | INFO     | ..............................
[2025-07-27 10:28:41] 2025-07-27 14:28:07,912 | INFO     | 
[2025-07-27 10:28:41] 2025-07-27 14:28:07,912 | INFO     | job summary report
[2025-07-27 10:28:41] 2025-07-27 14:28:07,912 | INFO     | --------------------------------------------------
[2025-07-27 10:28:41] 2025-07-27 14:28:07,912 | INFO     | PanDA job id: 6745919142
[2025-07-27 10:28:41] 2025-07-27 14:28:07,912 | INFO     | task id: 45758458
[2025-07-27 10:28:41] 2025-07-27 14:28:07,912 | INFO     | errors: (none)
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | pilot state: finished 
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | transexitcode: 0
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | exeerrorcode: 0
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | exeerrordiag: 
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | exitcode: 0
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | exitmsg: OK
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | cpuconsumptiontime: 80136 s
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | nevents: 400
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | neventsw: 0
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | pid: 1765078
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | pgrp: 1765078
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | corecount: 8
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | event service: False
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | sizes: {0: 2397292, 1: 2397491, 12: 2397491, 24: 2397519, 35: 2397809, 36: 2397837, 47: 2397993, 31616: 2436815, 31617: 2436814, 31624: 2445868, 31626: 2445924, 31
[2025-07-27 10:28:41] 2025-07-27 14:28:07,913 | INFO     | --------------------------------------------------
[2025-07-27 10:28:41] 2025-07-27 14:28:07,914 | INFO     | 
[2025-07-27 10:28:41] 2025-07-27 14:28:07,934 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 10:28:41] 2025-07-27 14:28:07,991 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,992 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,992 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,992 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 10:28:41] 2025-07-27 14:28:07,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 10:28:41] 2025-07-27 14:28:07,994 | INFO     | job 6745919142 has completed (purged errors)
[2025-07-27 10:28:41] 2025-07-27 14:28:07,994 | INFO     | overall cleanup function is called
[2025-07-27 10:28:41] 2025-07-27 14:28:09,004 | INFO     | --- collectZombieJob: --- 10, [1765078]
[2025-07-27 10:28:41] 2025-07-27 14:28:09,005 | INFO     | zombie collector waiting for pid 1765078
[2025-07-27 10:28:41] 2025-07-27 14:28:09,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 10:28:41] 2025-07-27 14:28:09,005 | INFO     | collected zombie processes
[2025-07-27 10:28:41] 2025-07-27 14:28:09,005 | INFO     | will attempt to kill all subprocesses of pid=1765078
[2025-07-27 10:28:41] 2025-07-27 14:28:10,197 | INFO     | process IDs to be killed: [1765078] (in reverse order)
[2025-07-27 10:28:41] 2025-07-27 14:28:10,889 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 10:28:41] 2025-07-27 14:28:10,889 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 10:28:41] 2025-07-27 14:28:10,926 | INFO     | did not find any defunct processes belonging to 1765078
[2025-07-27 10:28:41] 2025-07-27 14:28:10,977 | INFO     | did not find any defunct processes belonging to 1765078
[2025-07-27 10:28:41] 2025-07-27 14:28:10,978 | INFO     | ready for new job
[2025-07-27 10:28:41] 2025-07-27 14:28:10,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 10:28:41] 2025-07-27 14:28:10,998 | INFO     | ***************************************
[2025-07-27 10:28:41] 2025-07-27 14:28:10,998 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 10:28:41] 2025-07-27 14:28:10,998 | INFO     | ***************************************
[2025-07-27 10:28:41] 2025-07-27 14:28:10,998 | INFO     | 
[2025-07-27 10:28:41] 2025-07-27 14:28:11,034 | INFO     | architecture information:
[2025-07-27 10:28:41] 2025-07-27 14:28:11,043 | INFO     | executing command: cat /etc/os-release
[2025-07-27 10:28:41] 2025-07-27 14:28:11,195 | INFO     | cat /etc/os-release:
[2025-07-27 10:28:41] NAME="CentOS Linux"
[2025-07-27 10:28:41] VERSION="7 (Core)"
[2025-07-27 10:28:41] ID="centos"
[2025-07-27 10:28:41] ID_LIKE="rhel fedora"
[2025-07-27 10:28:41] VERSION_ID="7"
[2025-07-27 10:28:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 10:28:41] ANSI_COLOR="0;31"
[2025-07-27 10:28:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 10:28:41] HOME_URL="https://www.centos.org/"
[2025-07-27 10:28:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 10:28:41] 
[2025-07-27 10:28:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 10:28:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 10:28:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 10:28:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 10:28:41] 
[2025-07-27 10:28:41] 2025-07-27 14:28:11,196 | INFO     | ***************************************
[2025-07-27 10:28:41] 2025-07-27 14:28:11,700 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 10:28:41] 2025-07-27 14:28:11,803 | INFO     | sufficient remaining disk space (128820707328 B)
[2025-07-27 10:28:41] 2025-07-27 14:28:11,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 10:28:41] 2025-07-27 14:28:11,804 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 10:28:41] 2025-07-27 14:28:11,804 | INFO     | update_server=False
[2025-07-27 10:28:41] 2025-07-27 14:28:11,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 10:28:41] 2025-07-27 14:28:11,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 10:28:41] 2025-07-27 14:28:12,119 | INFO     | all payload control threads have been joined
[2025-07-27 10:28:41] 2025-07-27 14:28:12,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 10:28:41] 2025-07-27 14:28:12,450 | INFO     | all job control threads have been joined
[2025-07-27 10:28:41] 2025-07-27 14:28:12,566 | INFO     | all data control threads have been joined
[2025-07-27 10:28:41] 2025-07-27 14:28:12,626 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:28:41] 2025-07-27 14:28:12,627 | INFO     | aborting loop
[2025-07-27 10:28:41] 2025-07-27 14:28:12,811 | INFO     | [job] retrieve thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:12,942 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:28:41] 2025-07-27 14:28:12,959 | INFO     | [payload] failed_post thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,024 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,119 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,125 | INFO     | [payload] control thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,329 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,330 | INFO     | [job] validate thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,471 | INFO     | [job] control thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,573 | INFO     | [data] control thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,632 | INFO     | [job] job monitor thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,751 | INFO     | [data] copytool_in thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,812 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,817 | INFO     | [data] copytool_out thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,948 | INFO     | [job] queue monitor thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:13,985 | INFO     | [payload] validate_post thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:16,404 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 10:28:41] 2025-07-27 14:28:16,908 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140537229985600)>', '<ExcThread(monitor, started 140536363087616)>']
[2025-07-27 10:28:41] 2025-07-27 14:28:21,934 | INFO     | all workflow threads have been joined
[2025-07-27 10:28:41] 2025-07-27 14:28:21,935 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 10:28:41] 2025-07-27 14:28:21,935 | INFO     | traces error code: 0
[2025-07-27 10:28:41] 2025-07-27 14:28:21,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 10:28:41] 2025-07-27 14:28:40,300 | INFO     | PID=1758003 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 10:28:41] 2025-07-27 14:28:40,300 | INFO     | .. there are 15 such processes running
[2025-07-27 10:28:41] 2025-07-27 14:28:40,302 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 10:28:41] 2025-07-27 14:28:40,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 10:28:41] 2025-07-27 14:28:40,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 10:28:41] 2025-07-27 14:28:40,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 10:28:41] 2025-07-27 14:28:40,302 | INFO     | [monitor] control thread has ended
[2025-07-27 10:28:41] 2025-07-27 14:28:40,836 [wrapper] ==== pilot stdout END ====
[2025-07-27 10:28:41] 2025-07-27 14:28:40,854 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 10:28:41] 2025-07-27 14:28:40,875 [wrapper] pilotpid: 1758003
[2025-07-27 10:28:41] 2025-07-27 14:28:40,915 [wrapper] Pilot exit status: 0
[2025-07-27 10:28:41] 2025-07-27 14:28:41,155 [wrapper] pandaids: 6745919142
[2025-07-27 10:28:41] 2025-07-27 14:28:41,322 [wrapper] cleanup supervisor_pilot 2656157 1758004
[2025-07-27 10:28:41] 2025-07-27 14:28:41,327 [wrapper] Test setup, not cleaning
[2025-07-27 10:28:41] 2025-07-27 14:28:41,332 [wrapper] apfmon messages muted
[2025-07-27 10:28:41] 2025-07-27 14:28:41,337 [wrapper] ==== wrapper stdout END ====
[2025-07-27 10:28:41] 2025-07-27 14:28:41,343 [wrapper] ==== wrapper stderr END ====
[2025-07-27 10:28:41]  *** Error codes and diagnostics ***
[2025-07-27 10:28:41]     "exeErrorCode": 0,
[2025-07-27 10:28:41]     "exeErrorDiag": "",
[2025-07-27 10:28:41]     "pilotErrorCode": 0,
[2025-07-27 10:28:41]     "pilotErrorDiag": "",
[2025-07-27 10:28:41]  *** Listing of results directory ***
[2025-07-27 10:28:41] total 406300
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:58 pilot3.tar.gz
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:27 queuedata.json
[2025-07-27 10:28:41] -rwx------. 1 boincer umatlas     36292 Jul 26 20:27 runpilot2-wrapper.sh
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas       100 Jul 27 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 10:28:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 01:37 run_atlas
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas       105 Jul 27 01:37 job.xml
[2025-07-27 10:28:41] -rw-r--r--. 2 boincer umatlas 233896779 Jul 27 01:37 EVNT.45758456._000001.pool.root.1
[2025-07-27 10:28:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:37 start_atlas.sh
[2025-07-27 10:28:41] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 01:37 shared
[2025-07-27 10:28:41] -rw-r--r--. 2 boincer umatlas    542869 Jul 27 01:37 input.tar.gz
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas         0 Jul 27 01:37 boinc_lockfile
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas      2559 Jul 27 01:37 pandaJob.out
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas    980109 Jul 27 01:38 agis_schedconf.cvmfs.json
[2025-07-27 10:28:41] drwx------. 4 boincer umatlas      4096 Jul 27 01:39 pilot3
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas 171973643 Jul 27 10:26 HITS.45758458._000006.pool.root.1
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas       531 Jul 27 10:26 boinc_task_state.xml
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas      1044 Jul 27 10:27 memory_monitor_summary.json
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas   1593052 Jul 27 10:27 agis_ddmendpoints.agis.ALL.json
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas    537534 Jul 27 10:27 log.45758458._000006.job.log.tgz.1
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas      7816 Jul 27 10:28 heartbeat.json
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas      6858 Jul 27 10:28 init_data.xml
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 10:28 boinc_mmap_file
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas        28 Jul 27 10:28 wrapper_checkpoint.txt
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas        95 Jul 27 10:28 pilot_heartbeat.json
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas       823 Jul 27 10:28 pilotlog.txt
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas   2616551 Jul 27 10:28 log.45758458._000006.job.log.1
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas       357 Jul 27 10:28 output.list
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas       620 Jul 27 10:28 runtime_log
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas   3174400 Jul 27 10:28 result.tar.gz
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas      8671 Jul 27 10:28 runtime_log.err
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas       660 Jul 27 10:28 cXNLDm4P4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmdTLDmgHX8Rm.diag
[2025-07-27 10:28:41] -rw-r--r--. 1 boincer umatlas     20131 Jul 27 10:28 stderr.txt
[2025-07-27 10:28:41] HITS file was successfully produced:
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas 171973643 Jul 27 10:26 shared/HITS.pool.root.1
[2025-07-27 10:28:41]  *** Contents of shared directory: ***
[2025-07-27 10:28:41] total 400016
[2025-07-27 10:28:41] -rw-r--r--. 2 boincer umatlas 233896779 Jul 27 01:37 ATLAS.root_0
[2025-07-27 10:28:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:37 start_atlas.sh
[2025-07-27 10:28:41] -rw-r--r--. 2 boincer umatlas    542869 Jul 27 01:37 input.tar.gz
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas 171973643 Jul 27 10:26 HITS.pool.root.1
[2025-07-27 10:28:41] -rw-------. 1 boincer umatlas   3174400 Jul 27 10:28 result.tar.gz
10:28:43 (1754009): run_atlas exited; CPU time 81559.316155
10:28:43 (1754009): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN