Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:47:57 (3385879): wrapper (7.7.26015): starting
01:47:57 (3385879): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 01:47:57] Arguments: --nthreads 8
[2025-07-27 01:47:57] Threads: 8
[2025-07-27 01:47:57] Checking for CVMFS
[2025-07-27 01:47:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 01:47:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 01:47:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 01:47:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 01:47:57] 2.13.1.0 672044 13757 149180 148801 2 196 24343507 40960000 10364 16776704 0 38076636 99.873 26237455 43600 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 01:47:57] CVMFS is ok
[2025-07-27 01:47:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 01:47:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 01:47:57] Further information can be found at the LHC@home message board.
[2025-07-27 01:47:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 01:47:57] Checking for apptainer binary...
[2025-07-27 01:47:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 01:47:57] Running /usr/bin/apptainer --version
[2025-07-27 01:47:57] apptainer version 1.4.1-1.el9
[2025-07-27 01:47:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 01:47:57] c-212-3.aglt2.org
[2025-07-27 01:47:57] apptainer works
[2025-07-27 01:47:57] Set ATHENA_PROC_NUMBER=8
[2025-07-27 01:47:57] Set ATHENA_CORE_NUMBER=8
[2025-07-27 01:47:57] Starting ATLAS job with PandaID=6745918514
[2025-07-27 01:47:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 03:25:38]  *** The last 200 lines of the pilot log: ***
[2025-07-27 03:25:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 03:25:38]  replicas=None
[2025-07-27 03:25:38]  scope=mc23_13p6TeV
[2025-07-27 03:25:38]  status=None
[2025-07-27 03:25:38]  status_code=0
[2025-07-27 03:25:38]  storage_token=
[2025-07-27 03:25:38]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6745918514/log.45758877._000107.job.log.tgz.1
[2025-07-27 03:25:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/09/log.45758877._000107.job.log.tgz.1
[2025-07-27 03:25:38]  workdir=None
[2025-07-27 03:25:38] ]
[2025-07-27 03:25:38] 2025-07-27 07:24:57,735 | INFO     | transferring file log.45758877._000107.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745918514/log.45758877._000107.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 03:25:38] 2025-07-27 07:24:57,735 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745918514/log.45758877._000107.job.log.tgz.1 /tmp/boinchome/slots/2/log.45758877._000107.job
[2025-07-27 03:25:38] 2025-07-27 07:24:57,760 | INFO     | adding to output.list: log.45758877._000107.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/09/log.45758877._000107.job.log.tg
[2025-07-27 03:25:38] 2025-07-27 07:24:57,761 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 03:25:38] 2025-07-27 07:24:57,761 | INFO     | summary of transferred files:
[2025-07-27 03:25:38] 2025-07-27 07:24:57,761 | INFO     |  -- lfn=log.45758877._000107.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 03:25:38] 2025-07-27 07:24:57,761 | INFO     | stage-out finished correctly
[2025-07-27 03:25:38] 2025-07-27 07:24:59,790 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 03:25:38] 2025-07-27 07:24:59,895 | INFO     | job 6745918514 has state=finished
[2025-07-27 03:25:38] 2025-07-27 07:24:59,895 | INFO     | preparing for final server update for job 6745918514 in state='finished'
[2025-07-27 03:25:38] 2025-07-27 07:24:59,953 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 03:25:38] 2025-07-27 07:24:59,953 | INFO     | this job has now completed (state=finished)
[2025-07-27 03:25:38] 2025-07-27 07:24:59,953 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 03:25:38] 2025-07-27 07:24:59,953 | INFO     | log transfer has been attempted: DONE
[2025-07-27 03:25:38] 2025-07-27 07:24:59,954 | INFO     | job 6745918514 has finished - writing final server update
[2025-07-27 03:25:38] 2025-07-27 07:24:59,954 | INFO     | total number of processed events: 400 (read)
[2025-07-27 03:25:38] 2025-07-27 07:24:59,954 | INFO     | executing command: lscpu
[2025-07-27 03:25:38] 2025-07-27 07:25:00,011 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 03:25:38] 2025-07-27 07:25:01,148 | INFO     | PID=3389477 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 03:25:38] 2025-07-27 07:25:01,148 | INFO     | .. there are 13 such processes running
[2025-07-27 03:25:38] 2025-07-27 07:25:01,217 | WARNING  | process 3395880 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 03:25:38] 2025-07-27 07:25:01,218 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745918514/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 03:25:38] 2025-07-27 07:25:01,566 | INFO     | number of running child processes to parent process 3395880: 1
[2025-07-27 03:25:38] 2025-07-27 07:25:01,567 | INFO     | maximum number of monitored processes: 6
[2025-07-27 03:25:38] 2025-07-27 07:25:04,070 | INFO     | monitor loop #422: job 0:6745918514 is in state 'finished'
[2025-07-27 03:25:38] 2025-07-27 07:25:04,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 03:25:38] 2025-07-27 07:25:04,811 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 03:25:38] 2025-07-27 07:25:04,816 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3301.1191875
[2025-07-27 03:25:38] 2025-07-27 07:25:04,830 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745918514/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 03:25:38] 2025-07-27 07:25:04,831 | INFO     | extracted standard info from prmon json
[2025-07-27 03:25:38] 2025-07-27 07:25:04,831 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 03:25:38] 2025-07-27 07:25:04,831 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 03:25:38] 2025-07-27 07:25:04,831 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 03:25:38] 2025-07-27 07:25:04,831 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 03:25:38] 2025-07-27 07:25:04,833 | INFO     | fitting pss+swap vs Time
[2025-07-27 03:25:38] 2025-07-27 07:25:04,833 | INFO     | sum of square deviations: 211285822.0
[2025-07-27 03:25:38] 2025-07-27 07:25:04,834 | INFO     | sum of deviations: -603626506.5
[2025-07-27 03:25:38] 2025-07-27 07:25:04,834 | INFO     | mean x: 1753598275.5
[2025-07-27 03:25:38] 2025-07-27 07:25:04,834 | INFO     | mean y: 2521502.2386363638
[2025-07-27 03:25:38] 2025-07-27 07:25:04,834 | INFO     | -- intersect: 5012409959.61222
[2025-07-27 03:25:38] 2025-07-27 07:25:04,834 | INFO     | intersect: 5012409959.61222
[2025-07-27 03:25:38] 2025-07-27 07:25:04,834 | INFO     | chi2: 0.0022754187638951203
[2025-07-27 03:25:38] 2025-07-27 07:25:04,834 | INFO     | -- intersect: 5012409959.61222
[2025-07-27 03:25:38] 2025-07-27 07:25:04,834 | INFO     | current memory leak: -2.86 B/s (using 88 data points, chi2=0.00)
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | could have reported an average CPU frequency of 3304 MHz (7 samples)
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | ..............................
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | . Timing measurements:
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | . get job = 0 s
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | . initial setup = 2 s
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | . payload setup = 7 s
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | . stage-in = 0 s
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | . payload execution = 5781 s
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | . stage-out = 0 s
[2025-07-27 03:25:38] 2025-07-27 07:25:04,835 | INFO     | . log creation = 0 s
[2025-07-27 03:25:38] 2025-07-27 07:25:04,836 | INFO     | ..............................
[2025-07-27 03:25:38] 2025-07-27 07:25:05,026 | INFO     | 
[2025-07-27 03:25:38] 2025-07-27 07:25:05,026 | INFO     | job summary report
[2025-07-27 03:25:38] 2025-07-27 07:25:05,026 | INFO     | --------------------------------------------------
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | PanDA job id: 6745918514
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | task id: 45758877
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | errors: (none)
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | pilot state: finished 
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | transexitcode: 0
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | exeerrorcode: 0
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | exeerrordiag: 
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | exitcode: 0
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | exitmsg: OK
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | cpuconsumptiontime: 40045 s
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | nevents: 400
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | neventsw: 0
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | pid: 3395880
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | pgrp: 3395880
[2025-07-27 03:25:38] 2025-07-27 07:25:05,027 | INFO     | corecount: 8
[2025-07-27 03:25:38] 2025-07-27 07:25:05,028 | INFO     | event service: False
[2025-07-27 03:25:38] 2025-07-27 07:25:05,028 | INFO     | sizes: {0: 2397488, 5: 2397750, 11: 2397806, 5792: 2424397, 5793: 2433395, 5795: 2433451, 5800: 2433773}
[2025-07-27 03:25:38] 2025-07-27 07:25:05,028 | INFO     | --------------------------------------------------
[2025-07-27 03:25:38] 2025-07-27 07:25:05,028 | INFO     | 
[2025-07-27 03:25:38] 2025-07-27 07:25:05,028 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 03:25:38] 2025-07-27 07:25:05,047 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,048 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 03:25:38] 2025-07-27 07:25:05,049 | INFO     | job 6745918514 has completed (purged errors)
[2025-07-27 03:25:38] 2025-07-27 07:25:05,050 | INFO     | overall cleanup function is called
[2025-07-27 03:25:38] 2025-07-27 07:25:06,058 | INFO     | --- collectZombieJob: --- 10, [3395880]
[2025-07-27 03:25:38] 2025-07-27 07:25:06,058 | INFO     | zombie collector waiting for pid 3395880
[2025-07-27 03:25:38] 2025-07-27 07:25:06,058 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 03:25:38] 2025-07-27 07:25:06,059 | INFO     | collected zombie processes
[2025-07-27 03:25:38] 2025-07-27 07:25:06,059 | INFO     | will attempt to kill all subprocesses of pid=3395880
[2025-07-27 03:25:38] 2025-07-27 07:25:06,319 | INFO     | process IDs to be killed: [3395880] (in reverse order)
[2025-07-27 03:25:38] 2025-07-27 07:25:06,411 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 03:25:38] 2025-07-27 07:25:06,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 03:25:38] 2025-07-27 07:25:06,420 | INFO     | did not find any defunct processes belonging to 3395880
[2025-07-27 03:25:38] 2025-07-27 07:25:06,427 | INFO     | did not find any defunct processes belonging to 3395880
[2025-07-27 03:25:38] 2025-07-27 07:25:06,427 | INFO     | ready for new job
[2025-07-27 03:25:38] 2025-07-27 07:25:06,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 03:25:38] 2025-07-27 07:25:06,428 | INFO     | ***************************************
[2025-07-27 03:25:38] 2025-07-27 07:25:06,428 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 03:25:38] 2025-07-27 07:25:06,429 | INFO     | ***************************************
[2025-07-27 03:25:38] 2025-07-27 07:25:06,429 | INFO     | 
[2025-07-27 03:25:38] 2025-07-27 07:25:06,432 | INFO     | architecture information:
[2025-07-27 03:25:38] 2025-07-27 07:25:06,432 | INFO     | executing command: cat /etc/os-release
[2025-07-27 03:25:38] 2025-07-27 07:25:06,443 | INFO     | cat /etc/os-release:
[2025-07-27 03:25:38] NAME="CentOS Linux"
[2025-07-27 03:25:38] VERSION="7 (Core)"
[2025-07-27 03:25:38] ID="centos"
[2025-07-27 03:25:38] ID_LIKE="rhel fedora"
[2025-07-27 03:25:38] VERSION_ID="7"
[2025-07-27 03:25:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 03:25:38] ANSI_COLOR="0;31"
[2025-07-27 03:25:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 03:25:38] HOME_URL="https://www.centos.org/"
[2025-07-27 03:25:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 03:25:38] 
[2025-07-27 03:25:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 03:25:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 03:25:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 03:25:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 03:25:38] 
[2025-07-27 03:25:38] 2025-07-27 07:25:06,443 | INFO     | ***************************************
[2025-07-27 03:25:38] 2025-07-27 07:25:06,946 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 03:25:38] 2025-07-27 07:25:06,968 | INFO     | sufficient remaining disk space (122897301504 B)
[2025-07-27 03:25:38] 2025-07-27 07:25:06,968 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 03:25:38] 2025-07-27 07:25:06,968 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 03:25:38] 2025-07-27 07:25:06,968 | INFO     | update_server=False
[2025-07-27 03:25:38] 2025-07-27 07:25:06,968 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 03:25:38] 2025-07-27 07:25:07,048 | INFO     | all payload control threads have been joined
[2025-07-27 03:25:38] 2025-07-27 07:25:07,116 | INFO     | all data control threads have been joined
[2025-07-27 03:25:38] 2025-07-27 07:25:07,580 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 03:25:38] 2025-07-27 07:25:07,580 | INFO     | aborting loop
[2025-07-27 03:25:38] 2025-07-27 07:25:07,973 | INFO     | [job] retrieve thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:08,054 | INFO     | [payload] control thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:08,069 | INFO     | all job control threads have been joined
[2025-07-27 03:25:38] 2025-07-27 07:25:08,121 | INFO     | [data] control thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:08,217 | INFO     | [data] copytool_in thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:08,217 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:08,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 03:25:38] 2025-07-27 07:25:08,460 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:08,586 | INFO     | [job] job monitor thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:09,007 | INFO     | [job] validate thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:09,074 | INFO     | [job] control thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:09,086 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:09,295 | INFO     | [payload] failed_post thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:09,469 | INFO     | [payload] validate_post thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:09,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 03:25:38] 2025-07-27 07:25:10,331 | INFO     | [data] copytool_out thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:10,385 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 03:25:38] 2025-07-27 07:25:10,920 | INFO     | [job] queue monitor thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:14,392 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:17,257 | INFO     | job.realtimelogging is not enabled
[2025-07-27 03:25:38] 2025-07-27 07:25:18,263 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 03:25:38] 2025-07-27 07:25:18,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139940442376000)>', '<ExcThread(monitor, started 139939933042432)>']
[2025-07-27 03:25:38] 2025-07-27 07:25:23,316 | INFO     | all workflow threads have been joined
[2025-07-27 03:25:38] 2025-07-27 07:25:23,316 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 03:25:38] 2025-07-27 07:25:23,317 | INFO     | traces error code: 0
[2025-07-27 03:25:38] 2025-07-27 07:25:23,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 03:25:38] 2025-07-27 07:25:37,676 | INFO     | PID=3389477 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 03:25:38] 2025-07-27 07:25:37,676 | INFO     | .. there are 14 such processes running
[2025-07-27 03:25:38] 2025-07-27 07:25:37,677 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 03:25:38] 2025-07-27 07:25:37,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 03:25:38] 2025-07-27 07:25:37,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 03:25:38] 2025-07-27 07:25:37,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 03:25:38] 2025-07-27 07:25:37,677 | INFO     | [monitor] control thread has ended
[2025-07-27 03:25:38] 2025-07-27 07:25:37,857 [wrapper] ==== pilot stdout END ====
[2025-07-27 03:25:38] 2025-07-27 07:25:37,861 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 03:25:38] 2025-07-27 07:25:37,866 [wrapper] pilotpid: 3389477
[2025-07-27 03:25:38] 2025-07-27 07:25:37,870 [wrapper] Pilot exit status: 0
[2025-07-27 03:25:38] 2025-07-27 07:25:37,885 [wrapper] pandaids: 6745918514
[2025-07-27 03:25:38] 2025-07-27 07:25:37,972 [wrapper] cleanup supervisor_pilot 3652886 3389478
[2025-07-27 03:25:38] 2025-07-27 07:25:37,976 [wrapper] Test setup, not cleaning
[2025-07-27 03:25:38] 2025-07-27 07:25:37,979 [wrapper] apfmon messages muted
[2025-07-27 03:25:38] 2025-07-27 07:25:37,983 [wrapper] ==== wrapper stdout END ====
[2025-07-27 03:25:38] 2025-07-27 07:25:37,987 [wrapper] ==== wrapper stderr END ====
[2025-07-27 03:25:38]  *** Error codes and diagnostics ***
[2025-07-27 03:25:38]     "exeErrorCode": 0,
[2025-07-27 03:25:38]     "exeErrorDiag": "",
[2025-07-27 03:25:38]     "pilotErrorCode": 0,
[2025-07-27 03:25:38]     "pilotErrorDiag": "",
[2025-07-27 03:25:38]  *** Listing of results directory ***
[2025-07-27 03:25:38] total 406704
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:58 pilot3.tar.gz
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:26 queuedata.json
[2025-07-27 03:25:38] -rwx------. 1 boincer umatlas     36292 Jul 26 20:26 runpilot2-wrapper.sh
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas       100 Jul 27 01:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 03:25:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 01:47 run_atlas
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas       105 Jul 27 01:47 job.xml
[2025-07-27 03:25:38] -rw-r--r--. 2 boincer umatlas 237052334 Jul 27 01:47 EVNT.45758875._000005.pool.root.1
[2025-07-27 03:25:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:47 start_atlas.sh
[2025-07-27 03:25:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 01:47 shared
[2025-07-27 03:25:38] -rw-r--r--. 2 boincer umatlas    542889 Jul 27 01:47 input.tar.gz
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas         0 Jul 27 01:47 boinc_lockfile
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas      2579 Jul 27 01:47 pandaJob.out
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas    980109 Jul 27 01:48 agis_schedconf.cvmfs.json
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas   1593052 Jul 27 01:48 agis_ddmendpoints.agis.ALL.json
[2025-07-27 03:25:38] drwx------. 4 boincer umatlas      4096 Jul 27 01:48 pilot3
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 03:22 init_data.xml
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas 173807021 Jul 27 03:24 HITS.45758877._000107.pool.root.1
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas       529 Jul 27 03:24 boinc_task_state.xml
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas      1038 Jul 27 03:24 memory_monitor_summary.json
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas    309197 Jul 27 03:24 log.45758877._000107.job.log.tgz.1
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas      7751 Jul 27 03:25 heartbeat.json
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 03:25 boinc_mmap_file
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas        27 Jul 27 03:25 wrapper_checkpoint.txt
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas       823 Jul 27 03:25 pilotlog.txt
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas        95 Jul 27 03:25 pilot_heartbeat.json
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas    557460 Jul 27 03:25 log.45758877._000107.job.log.1
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas       357 Jul 27 03:25 output.list
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas       620 Jul 27 03:25 runtime_log
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas    880640 Jul 27 03:25 result.tar.gz
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 03:25 runtime_log.err
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas       651 Jul 27 03:25 gu9NDm5O4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgdTLDmD1mxpn.diag
[2025-07-27 03:25:38] -rw-r--r--. 1 boincer umatlas     21960 Jul 27 03:25 stderr.txt
[2025-07-27 03:25:38] HITS file was successfully produced:
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas 173807021 Jul 27 03:24 shared/HITS.pool.root.1
[2025-07-27 03:25:38]  *** Contents of shared directory: ***
[2025-07-27 03:25:38] total 402648
[2025-07-27 03:25:38] -rw-r--r--. 2 boincer umatlas 237052334 Jul 27 01:47 ATLAS.root_0
[2025-07-27 03:25:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:47 start_atlas.sh
[2025-07-27 03:25:38] -rw-r--r--. 2 boincer umatlas    542889 Jul 27 01:47 input.tar.gz
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas 173807021 Jul 27 03:24 HITS.pool.root.1
[2025-07-27 03:25:38] -rw-------. 1 boincer umatlas    880640 Jul 27 03:25 result.tar.gz
03:25:39 (3385879): run_atlas exited; CPU time 40198.228143
03:25:39 (3385879): called boinc_finish(0)

</stderr_txt>
]]>

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