Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:19:50 (2823155): wrapper (7.7.26015): starting
03:19:50 (2823155): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:19:50] Arguments: --nthreads 12
[2025-07-27 03:19:50] Threads: 12
[2025-07-27 03:19:50] Checking for CVMFS
[2025-07-27 03:19:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:19:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:19:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:19:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:19:51] 2.13.0.0 3229734 18055 333952 148804 0 104 22876513 40960000 10647 16776704 0 58717485 99.846 45536469 31342 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 03:19:51] CVMFS is ok
[2025-07-27 03:19:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:19:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:19:51] Further information can be found at the LHC@home message board.
[2025-07-27 03:19:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:19:51] Checking for apptainer binary...
[2025-07-27 03:19:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:19:51] Running /usr/bin/apptainer --version
[2025-07-27 03:19:51] apptainer version 1.4.1-1.el9
[2025-07-27 03:19:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:19:51] c6-5-7-4.aglt2.org
[2025-07-27 03:19:51] apptainer works
[2025-07-27 03:19:51] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:19:51] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:19:51] Starting ATLAS job with PandaID=6745919329
[2025-07-27 03:19:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:45:06]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:45:06]  mtime=0
[2025-07-27 04:45:06]  protocol_id=None
[2025-07-27 04:45:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 04:45:06]  replicas=None
[2025-07-27 04:45:06]  scope=mc23_13p6TeV
[2025-07-27 04:45:06]  status=None
[2025-07-27 04:45:06]  status_code=0
[2025-07-27 04:45:06]  storage_token=
[2025-07-27 04:45:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745919329/log.45759065._000060.job.log.tgz.1
[2025-07-27 04:45:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/52/log.45759065._000060.job.log.tgz.1
[2025-07-27 04:45:06]  workdir=None
[2025-07-27 04:45:06] ]
[2025-07-27 04:45:06] 2025-07-27 08:44:25,007 | INFO     | transferring file log.45759065._000060.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745919329/log.45759065._000060.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:45:06] 2025-07-27 08:44:25,007 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745919329/log.45759065._000060.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759065._000060.job
[2025-07-27 04:45:06] 2025-07-27 08:44:25,025 | INFO     | adding to output.list: log.45759065._000060.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/52/log.45759065._000060.job.log.tg
[2025-07-27 04:45:06] 2025-07-27 08:44:25,026 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:45:06] 2025-07-27 08:44:25,026 | INFO     | summary of transferred files:
[2025-07-27 04:45:06] 2025-07-27 08:44:25,026 | INFO     |  -- lfn=log.45759065._000060.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:45:06] 2025-07-27 08:44:25,026 | INFO     | stage-out finished correctly
[2025-07-27 04:45:06] 2025-07-27 08:44:25,204 | INFO     | monitor loop #372: job 0:6745919329 is in state 'finished'
[2025-07-27 04:45:06] 2025-07-27 08:44:25,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:45:06] 2025-07-27 08:44:27,063 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:45:06] 2025-07-27 08:44:27,707 | INFO     | monitor loop #373: job 0:6745919329 is in state 'finished'
[2025-07-27 04:45:06] 2025-07-27 08:44:27,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:45:06] 2025-07-27 08:44:29,348 | INFO     | job 6745919329 has state=finished
[2025-07-27 04:45:06] 2025-07-27 08:44:29,348 | INFO     | preparing for final server update for job 6745919329 in state='finished'
[2025-07-27 04:45:06] 2025-07-27 08:44:29,348 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:45:06] 2025-07-27 08:44:29,349 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:45:06] 2025-07-27 08:44:29,349 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:45:06] 2025-07-27 08:44:29,349 | INFO     | job 6745919329 has finished - writing final server update
[2025-07-27 04:45:06] 2025-07-27 08:44:29,349 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:45:06] 2025-07-27 08:44:29,350 | INFO     | executing command: lscpu
[2025-07-27 04:45:06] 2025-07-27 08:44:29,399 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:45:06] 2025-07-27 08:44:30,210 | INFO     | monitor loop #374: job 0:6745919329 is in state 'finished'
[2025-07-27 04:45:06] 2025-07-27 08:44:30,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:45:06] 2025-07-27 08:44:32,713 | INFO     | monitor loop #375: job 0:6745919329 is in state 'finished'
[2025-07-27 04:45:06] 2025-07-27 08:44:32,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:45:06] 2025-07-27 08:44:33,604 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 04:45:06] 2025-07-27 08:44:33,611 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2775.981803571428
[2025-07-27 04:45:06] 2025-07-27 08:44:33,621 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745919329/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:45:06] 2025-07-27 08:44:33,621 | INFO     | extracted standard info from prmon json
[2025-07-27 04:45:06] 2025-07-27 08:44:33,621 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:45:06] 2025-07-27 08:44:33,621 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:45:06] 2025-07-27 08:44:33,622 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:45:06] 2025-07-27 08:44:33,622 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:45:06] 2025-07-27 08:44:33,624 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:45:06] 2025-07-27 08:44:33,624 | INFO     | sum of square deviations: 136095575.0
[2025-07-27 04:45:06] 2025-07-27 08:44:33,624 | INFO     | sum of deviations: -15170526943.0
[2025-07-27 04:45:06] 2025-07-27 08:44:33,624 | INFO     | mean x: 1753603423.5
[2025-07-27 04:45:06] 2025-07-27 08:44:33,624 | INFO     | mean y: 3006773.3947368423
[2025-07-27 04:45:06] 2025-07-27 08:44:33,624 | INFO     | -- intersect: 195476577339.84256
[2025-07-27 04:45:06] 2025-07-27 08:44:33,624 | INFO     | intersect: 195476577339.84256
[2025-07-27 04:45:06] 2025-07-27 08:44:33,624 | INFO     | chi2: 0.12905837927450645
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | -- intersect: 195476577339.84256
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | current memory leak: -111.47 B/s (using 76 data points, chi2=0.13)
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | could have reported an average CPU frequency of 2800 MHz (6 samples)
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | ..............................
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | . Timing measurements:
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | . get job = 0 s
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | . initial setup = 2 s
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | . payload setup = 7 s
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | . stage-in = 0 s
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | . payload execution = 5035 s
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | . stage-out = 0 s
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | . log creation = 0 s
[2025-07-27 04:45:06] 2025-07-27 08:44:33,625 | INFO     | ..............................
[2025-07-27 04:45:06] 2025-07-27 08:44:33,902 | INFO     | 
[2025-07-27 04:45:06] 2025-07-27 08:44:33,902 | INFO     | job summary report
[2025-07-27 04:45:06] 2025-07-27 08:44:33,902 | INFO     | --------------------------------------------------
[2025-07-27 04:45:06] 2025-07-27 08:44:33,902 | INFO     | PanDA job id: 6745919329
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | task id: 45759065
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | errors: (none)
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | pilot state: finished 
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | transexitcode: 0
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | exeerrorcode: 0
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | exeerrordiag: 
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | exitcode: 0
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | exitmsg: OK
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | cpuconsumptiontime: 55187 s
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | nevents: 400
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | neventsw: 0
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | pid: 2834639
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | pgrp: 2834639
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | corecount: 12
[2025-07-27 04:45:06] 2025-07-27 08:44:33,903 | INFO     | event service: False
[2025-07-27 04:45:06] 2025-07-27 08:44:33,904 | INFO     | sizes: {0: 2397462, 5: 2397724, 11: 2397780, 5045: 2423991, 5046: 2432989, 5048: 2433045, 5055: 2433367}
[2025-07-27 04:45:06] 2025-07-27 08:44:33,904 | INFO     | --------------------------------------------------
[2025-07-27 04:45:06] 2025-07-27 08:44:33,904 | INFO     | 
[2025-07-27 04:45:06] 2025-07-27 08:44:33,904 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 04:45:06] 2025-07-27 08:44:33,922 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,922 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,922 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,922 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,923 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:45:06] 2025-07-27 08:44:33,924 | INFO     | job 6745919329 has completed (purged errors)
[2025-07-27 04:45:06] 2025-07-27 08:44:33,924 | INFO     | overall cleanup function is called
[2025-07-27 04:45:06] 2025-07-27 08:44:34,931 | INFO     | --- collectZombieJob: --- 10, [2834639]
[2025-07-27 04:45:06] 2025-07-27 08:44:34,931 | INFO     | zombie collector waiting for pid 2834639
[2025-07-27 04:45:06] 2025-07-27 08:44:34,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:45:06] 2025-07-27 08:44:34,931 | INFO     | collected zombie processes
[2025-07-27 04:45:06] 2025-07-27 08:44:34,931 | INFO     | will attempt to kill all subprocesses of pid=2834639
[2025-07-27 04:45:06] 2025-07-27 08:44:35,176 | INFO     | process IDs to be killed: [2834639] (in reverse order)
[2025-07-27 04:45:06] 2025-07-27 08:44:35,266 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:45:06] 2025-07-27 08:44:35,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:45:06] 2025-07-27 08:44:35,276 | INFO     | did not find any defunct processes belonging to 2834639
[2025-07-27 04:45:06] 2025-07-27 08:44:35,286 | INFO     | did not find any defunct processes belonging to 2834639
[2025-07-27 04:45:06] 2025-07-27 08:44:35,286 | INFO     | ready for new job
[2025-07-27 04:45:06] 2025-07-27 08:44:35,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:45:06] 2025-07-27 08:44:35,288 | INFO     | ***************************************
[2025-07-27 04:45:06] 2025-07-27 08:44:35,288 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:45:06] 2025-07-27 08:44:35,288 | INFO     | ***************************************
[2025-07-27 04:45:06] 2025-07-27 08:44:35,288 | INFO     | 
[2025-07-27 04:45:06] 2025-07-27 08:44:35,291 | INFO     | architecture information:
[2025-07-27 04:45:06] 2025-07-27 08:44:35,291 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:45:06] 2025-07-27 08:44:35,310 | INFO     | cat /etc/os-release:
[2025-07-27 04:45:06] NAME="CentOS Linux"
[2025-07-27 04:45:06] VERSION="7 (Core)"
[2025-07-27 04:45:06] ID="centos"
[2025-07-27 04:45:06] ID_LIKE="rhel fedora"
[2025-07-27 04:45:06] VERSION_ID="7"
[2025-07-27 04:45:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:45:06] ANSI_COLOR="0;31"
[2025-07-27 04:45:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:45:06] HOME_URL="https://www.centos.org/"
[2025-07-27 04:45:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:45:06] 
[2025-07-27 04:45:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:45:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:45:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:45:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:45:06] 
[2025-07-27 04:45:06] 2025-07-27 08:44:35,311 | INFO     | ***************************************
[2025-07-27 04:45:06] 2025-07-27 08:44:35,814 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 04:45:06] 2025-07-27 08:44:35,829 | INFO     | sufficient remaining disk space (75295096832 B)
[2025-07-27 04:45:06] 2025-07-27 08:44:35,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:45:06] 2025-07-27 08:44:35,830 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:45:06] 2025-07-27 08:44:35,830 | INFO     | update_server=False
[2025-07-27 04:45:06] 2025-07-27 08:44:35,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:45:06] 2025-07-27 08:44:35,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:45:06] 2025-07-27 08:44:36,045 | INFO     | all job control threads have been joined
[2025-07-27 04:45:06] 2025-07-27 08:44:36,050 | INFO     | all data control threads have been joined
[2025-07-27 04:45:06] 2025-07-27 08:44:36,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:45:06] 2025-07-27 08:44:36,221 | INFO     | aborting loop
[2025-07-27 04:45:06] 2025-07-27 08:44:36,835 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:37,044 | INFO     | all payload control threads have been joined
[2025-07-27 04:45:06] 2025-07-27 08:44:37,050 | INFO     | [job] control thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:37,055 | INFO     | [data] control thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:37,166 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:37,226 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:37,303 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:37,314 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:37,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:45:06] 2025-07-27 08:44:37,677 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:37,682 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:37,835 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:38,049 | INFO     | [payload] control thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:38,161 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:38,184 | INFO     | [job] validate thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:38,219 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:38,715 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:45:06] 2025-07-27 08:44:39,720 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:41,642 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:45:06] 2025-07-27 08:44:43,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139891497764672)>', '<ExcThread(monitor, started 139891153291008)>']
[2025-07-27 04:45:06] 2025-07-27 08:44:48,149 | INFO     | all workflow threads have been joined
[2025-07-27 04:45:06] 2025-07-27 08:44:48,149 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:45:06] 2025-07-27 08:44:48,150 | INFO     | traces error code: 0
[2025-07-27 04:45:06] 2025-07-27 08:44:48,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:45:06] 2025-07-27 08:45:06,353 | INFO     | PID=2826807 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 04:45:06] 2025-07-27 08:45:06,353 | INFO     | .. there are 13 such processes running
[2025-07-27 04:45:06] 2025-07-27 08:45:06,354 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:45:06] 2025-07-27 08:45:06,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:45:06] 2025-07-27 08:45:06,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:45:06] 2025-07-27 08:45:06,354 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:45:06] 2025-07-27 08:45:06,354 | INFO     | [monitor] control thread has ended
[2025-07-27 04:45:06] 2025-07-27 08:45:06,522 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:45:06] 2025-07-27 08:45:06,527 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:45:06] 2025-07-27 08:45:06,530 [wrapper] pilotpid: 2826807
[2025-07-27 04:45:06] 2025-07-27 08:45:06,533 [wrapper] Pilot exit status: 0
[2025-07-27 04:45:06] 2025-07-27 08:45:06,547 [wrapper] pandaids: 6745919329
[2025-07-27 04:45:06] 2025-07-27 08:45:06,606 [wrapper] cleanup supervisor_pilot 3051072 2826808
[2025-07-27 04:45:06] 2025-07-27 08:45:06,610 [wrapper] Test setup, not cleaning
[2025-07-27 04:45:06] 2025-07-27 08:45:06,613 [wrapper] apfmon messages muted
[2025-07-27 04:45:06] 2025-07-27 08:45:06,616 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:45:06] 2025-07-27 08:45:06,621 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:45:06]  *** Error codes and diagnostics ***
[2025-07-27 04:45:06]     "exeErrorCode": 0,
[2025-07-27 04:45:06]     "exeErrorDiag": "",
[2025-07-27 04:45:06]     "pilotErrorCode": 0,
[2025-07-27 04:45:06]     "pilotErrorDiag": "",
[2025-07-27 04:45:06]  *** Listing of results directory ***
[2025-07-27 04:45:06] total 399560
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:36 queuedata.json
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 20:36 pilot3.tar.gz
[2025-07-27 04:45:06] -rwx------. 1 boincer umatlas     36292 Jul 26 20:36 runpilot2-wrapper.sh
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas       100 Jul 27 03:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:45:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 03:19 run_atlas
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas       105 Jul 27 03:19 job.xml
[2025-07-27 04:45:06] -rw-r--r--. 2 boincer umatlas 232282909 Jul 27 03:19 EVNT.45759062._000003.pool.root.1
[2025-07-27 04:45:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:19 start_atlas.sh
[2025-07-27 04:45:06] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 03:19 shared
[2025-07-27 04:45:06] -rw-r--r--. 2 boincer umatlas    542877 Jul 27 03:19 input.tar.gz
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas         0 Jul 27 03:19 boinc_lockfile
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas      2555 Jul 27 03:19 pandaJob.out
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas    980125 Jul 27 03:19 agis_schedconf.cvmfs.json
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas   1593052 Jul 27 03:20 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:45:06] drwx------. 4 boincer umatlas      4096 Jul 27 03:20 pilot3
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas      6839 Jul 27 04:39 init_data.xml
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas 171271911 Jul 27 04:43 HITS.45759065._000060.pool.root.1
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas       530 Jul 27 04:43 boinc_task_state.xml
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas      1036 Jul 27 04:44 memory_monitor_summary.json
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas    364236 Jul 27 04:44 log.45759065._000060.job.log.tgz.1
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas      7809 Jul 27 04:44 heartbeat.json
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 04:44 boinc_mmap_file
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas        27 Jul 27 04:44 wrapper_checkpoint.txt
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas        95 Jul 27 04:45 pilot_heartbeat.json
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas       823 Jul 27 04:45 pilotlog.txt
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas    496581 Jul 27 04:45 log.45759065._000060.job.log.1
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas       357 Jul 27 04:45 output.list
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:45 runtime_log
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas    880640 Jul 27 04:45 result.tar.gz
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 04:45 runtime_log.err
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas       653 Jul 27 04:45 7GSLDmvY4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjfTLDmk84dBo.diag
[2025-07-27 04:45:06] -rw-r--r--. 1 boincer umatlas     21766 Jul 27 04:45 stderr.txt
[2025-07-27 04:45:06] HITS file was successfully produced:
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas 171271911 Jul 27 04:43 shared/HITS.pool.root.1
[2025-07-27 04:45:06]  *** Contents of shared directory: ***
[2025-07-27 04:45:06] total 395512
[2025-07-27 04:45:06] -rw-r--r--. 2 boincer umatlas 232282909 Jul 27 03:19 ATLAS.root_0
[2025-07-27 04:45:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:19 start_atlas.sh
[2025-07-27 04:45:06] -rw-r--r--. 2 boincer umatlas    542877 Jul 27 03:19 input.tar.gz
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas 171271911 Jul 27 04:43 HITS.pool.root.1
[2025-07-27 04:45:06] -rw-------. 1 boincer umatlas    880640 Jul 27 04:45 result.tar.gz
04:45:08 (2823155): run_atlas exited; CPU time 55237.805620
04:45:08 (2823155): called boinc_finish(0)

</stderr_txt>
]]>

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