Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:10:47 (2260061): wrapper (7.7.26015): starting
03:10:47 (2260061): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:10:47] Arguments: --nthreads 12
[2025-07-27 03:10:47] Threads: 12
[2025-07-27 03:10:47] Checking for CVMFS
[2025-07-27 03:10:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:10:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:10:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:10:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:10:47] 2.12.6.0 18753 18065 322020 148803 3 360 30042363 32935937 12448 16776704 0 32477915 99.625 71540457 26065 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 03:10:47] CVMFS is ok
[2025-07-27 03:10:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:10:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:10:47] Further information can be found at the LHC@home message board.
[2025-07-27 03:10:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:10:47] Checking for apptainer binary...
[2025-07-27 03:10:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:10:47] Running /usr/bin/apptainer --version
[2025-07-27 03:10:47] apptainer version 1.4.1-1.el9
[2025-07-27 03:10:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:10:47] c6-1-24-4.aglt2.org
[2025-07-27 03:10:47] apptainer works
[2025-07-27 03:10:47] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:10:47] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:10:47] Starting ATLAS job with PandaID=6745736147
[2025-07-27 03:10:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:23:40]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:23:40]  lfn=log.45743349._044742.job.log.tgz.1
[2025-07-27 04:23:40]  mtime=0
[2025-07-27 04:23:40]  protocol_id=None
[2025-07-27 04:23:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 04:23:40]  replicas=None
[2025-07-27 04:23:40]  scope=mc23_13p6TeV
[2025-07-27 04:23:40]  status=None
[2025-07-27 04:23:40]  status_code=0
[2025-07-27 04:23:40]  storage_token=
[2025-07-27 04:23:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745736147/log.45743349._044742.job.log.tgz.1
[2025-07-27 04:23:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/9a/log.45743349._044742.job.log.tgz.1
[2025-07-27 04:23:40]  workdir=None
[2025-07-27 04:23:40] ]
[2025-07-27 04:23:40] 2025-07-27 08:22:58,831 | INFO     | transferring file log.45743349._044742.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745736147/log.45743349._044742.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:23:40] 2025-07-27 08:22:58,832 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745736147/log.45743349._044742.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._044742.job
[2025-07-27 04:23:40] 2025-07-27 08:22:58,855 | INFO     | adding to output.list: log.45743349._044742.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/9a/log.45743349._044742.job.log.tg
[2025-07-27 04:23:40] 2025-07-27 08:22:58,857 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:23:40] 2025-07-27 08:22:58,857 | INFO     | summary of transferred files:
[2025-07-27 04:23:40] 2025-07-27 08:22:58,857 | INFO     |  -- lfn=log.45743349._044742.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:23:40] 2025-07-27 08:22:58,858 | INFO     | stage-out finished correctly
[2025-07-27 04:23:40] 2025-07-27 08:23:00,470 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:23:40] 2025-07-27 08:23:00,899 | INFO     | job 6745736147 has state=finished
[2025-07-27 04:23:40] 2025-07-27 08:23:00,900 | INFO     | preparing for final server update for job 6745736147 in state='finished'
[2025-07-27 04:23:40] 2025-07-27 08:23:00,901 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:23:40] 2025-07-27 08:23:00,901 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:23:40] 2025-07-27 08:23:00,901 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:23:40] 2025-07-27 08:23:00,901 | INFO     | job 6745736147 has finished - writing final server update
[2025-07-27 04:23:40] 2025-07-27 08:23:00,902 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:23:40] 2025-07-27 08:23:00,903 | INFO     | executing command: lscpu
[2025-07-27 04:23:40] 2025-07-27 08:23:00,961 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:23:40] 2025-07-27 08:23:03,004 | WARNING  | process 2270742 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 04:23:40] 2025-07-27 08:23:03,005 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745736147/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:23:40] 2025-07-27 08:23:03,370 | INFO     | number of running child processes to parent process 2270742: 1
[2025-07-27 04:23:40] 2025-07-27 08:23:03,371 | INFO     | maximum number of monitored processes: 6
[2025-07-27 04:23:40] 2025-07-27 08:23:05,874 | INFO     | monitor loop #318: job 0:6745736147 is in state 'finished'
[2025-07-27 04:23:40] 2025-07-27 08:23:05,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:23:40] 2025-07-27 08:23:06,376 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 04:23:40] 2025-07-27 08:23:06,380 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2698.306767857143
[2025-07-27 04:23:40] 2025-07-27 08:23:06,390 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745736147/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:23:40] 2025-07-27 08:23:06,391 | INFO     | extracted standard info from prmon json
[2025-07-27 04:23:40] 2025-07-27 08:23:06,391 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:23:40] 2025-07-27 08:23:06,392 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:23:40] 2025-07-27 08:23:06,393 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:23:40] 2025-07-27 08:23:06,393 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:23:40] 2025-07-27 08:23:06,396 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:23:40] 2025-07-27 08:23:06,396 | INFO     | sum of square deviations: 81266640.0
[2025-07-27 04:23:40] 2025-07-27 08:23:06,396 | INFO     | sum of deviations: -405659333.0
[2025-07-27 04:23:40] 2025-07-27 08:23:06,397 | INFO     | mean x: 1753602513.5
[2025-07-27 04:23:40] 2025-07-27 08:23:06,397 | INFO     | mean y: 2483725.0
[2025-07-27 04:23:40] 2025-07-27 08:23:06,397 | INFO     | -- intersect: 8755955333.688799
[2025-07-27 04:23:40] 2025-07-27 08:23:06,397 | INFO     | intersect: 8755955333.688799
[2025-07-27 04:23:40] 2025-07-27 08:23:06,397 | INFO     | chi2: 0.09660139648339343
[2025-07-27 04:23:40] 2025-07-27 08:23:06,397 | INFO     | -- intersect: 8755955333.688799
[2025-07-27 04:23:40] 2025-07-27 08:23:06,397 | INFO     | current memory leak: -4.99 B/s (using 64 data points, chi2=0.10)
[2025-07-27 04:23:40] 2025-07-27 08:23:06,398 | INFO     | could have reported an average CPU frequency of 2667 MHz (6 samples)
[2025-07-27 04:23:40] 2025-07-27 08:23:06,398 | INFO     | ..............................
[2025-07-27 04:23:40] 2025-07-27 08:23:06,398 | INFO     | . Timing measurements:
[2025-07-27 04:23:40] 2025-07-27 08:23:06,398 | INFO     | . get job = 0 s
[2025-07-27 04:23:40] 2025-07-27 08:23:06,398 | INFO     | . initial setup = 2 s
[2025-07-27 04:23:40] 2025-07-27 08:23:06,398 | INFO     | . payload setup = 7 s
[2025-07-27 04:23:40] 2025-07-27 08:23:06,398 | INFO     | . stage-in = 0 s
[2025-07-27 04:23:40] 2025-07-27 08:23:06,398 | INFO     | . payload execution = 4291 s
[2025-07-27 04:23:40] 2025-07-27 08:23:06,399 | INFO     | . stage-out = 0 s
[2025-07-27 04:23:40] 2025-07-27 08:23:06,399 | INFO     | . log creation = 0 s
[2025-07-27 04:23:40] 2025-07-27 08:23:06,399 | INFO     | ..............................
[2025-07-27 04:23:40] 2025-07-27 08:23:06,501 | INFO     | 
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | job summary report
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | --------------------------------------------------
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | PanDA job id: 6745736147
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | task id: 45743349
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | errors: (none)
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | pilot state: finished 
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | transexitcode: 0
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | exeerrorcode: 0
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | exeerrordiag: 
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | exitcode: 0
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | exitmsg: OK
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | cpuconsumptiontime: 43720 s
[2025-07-27 04:23:40] 2025-07-27 08:23:06,502 | INFO     | nevents: 400
[2025-07-27 04:23:40] 2025-07-27 08:23:06,503 | INFO     | neventsw: 0
[2025-07-27 04:23:40] 2025-07-27 08:23:06,503 | INFO     | pid: 2270742
[2025-07-27 04:23:40] 2025-07-27 08:23:06,503 | INFO     | pgrp: 2270742
[2025-07-27 04:23:40] 2025-07-27 08:23:06,504 | INFO     | corecount: 12
[2025-07-27 04:23:40] 2025-07-27 08:23:06,504 | INFO     | event service: False
[2025-07-27 04:23:40] 2025-07-27 08:23:06,504 | INFO     | sizes: {0: 2397473, 5: 2397735, 11: 2397791, 4303: 2423661, 4304: 2432659, 4306: 2432715, 4312: 2433037}
[2025-07-27 04:23:40] 2025-07-27 08:23:06,504 | INFO     | --------------------------------------------------
[2025-07-27 04:23:40] 2025-07-27 08:23:06,504 | INFO     | 
[2025-07-27 04:23:40] 2025-07-27 08:23:06,504 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 04:23:40] 2025-07-27 08:23:06,529 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,529 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,529 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,530 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:23:40] 2025-07-27 08:23:06,531 | INFO     | job 6745736147 has completed (purged errors)
[2025-07-27 04:23:40] 2025-07-27 08:23:06,531 | INFO     | overall cleanup function is called
[2025-07-27 04:23:40] 2025-07-27 08:23:07,539 | INFO     | --- collectZombieJob: --- 10, [2270742]
[2025-07-27 04:23:40] 2025-07-27 08:23:07,540 | INFO     | zombie collector waiting for pid 2270742
[2025-07-27 04:23:40] 2025-07-27 08:23:07,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:23:40] 2025-07-27 08:23:07,540 | INFO     | collected zombie processes
[2025-07-27 04:23:40] 2025-07-27 08:23:07,540 | INFO     | will attempt to kill all subprocesses of pid=2270742
[2025-07-27 04:23:40] 2025-07-27 08:23:07,813 | INFO     | process IDs to be killed: [2270742] (in reverse order)
[2025-07-27 04:23:40] 2025-07-27 08:23:07,916 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:23:40] 2025-07-27 08:23:07,917 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:23:40] 2025-07-27 08:23:07,928 | INFO     | did not find any defunct processes belonging to 2270742
[2025-07-27 04:23:40] 2025-07-27 08:23:07,942 | INFO     | did not find any defunct processes belonging to 2270742
[2025-07-27 04:23:40] 2025-07-27 08:23:07,942 | INFO     | ready for new job
[2025-07-27 04:23:40] 2025-07-27 08:23:07,943 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:23:40] 2025-07-27 08:23:07,948 | INFO     | ***************************************
[2025-07-27 04:23:40] 2025-07-27 08:23:07,950 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:23:40] 2025-07-27 08:23:07,950 | INFO     | ***************************************
[2025-07-27 04:23:40] 2025-07-27 08:23:07,950 | INFO     | 
[2025-07-27 04:23:40] 2025-07-27 08:23:07,966 | INFO     | architecture information:
[2025-07-27 04:23:40] 2025-07-27 08:23:07,967 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:23:40] 2025-07-27 08:23:07,984 | INFO     | cat /etc/os-release:
[2025-07-27 04:23:40] NAME="CentOS Linux"
[2025-07-27 04:23:40] VERSION="7 (Core)"
[2025-07-27 04:23:40] ID="centos"
[2025-07-27 04:23:40] ID_LIKE="rhel fedora"
[2025-07-27 04:23:40] VERSION_ID="7"
[2025-07-27 04:23:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:23:40] ANSI_COLOR="0;31"
[2025-07-27 04:23:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:23:40] HOME_URL="https://www.centos.org/"
[2025-07-27 04:23:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:23:40] 
[2025-07-27 04:23:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:23:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:23:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:23:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:23:40] 
[2025-07-27 04:23:40] 2025-07-27 08:23:07,985 | INFO     | ***************************************
[2025-07-27 04:23:40] 2025-07-27 08:23:08,488 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 04:23:40] 2025-07-27 08:23:08,509 | INFO     | sufficient remaining disk space (76269223936 B)
[2025-07-27 04:23:40] 2025-07-27 08:23:08,510 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:23:40] 2025-07-27 08:23:08,510 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:23:40] 2025-07-27 08:23:08,510 | INFO     | update_server=False
[2025-07-27 04:23:40] 2025-07-27 08:23:08,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:23:40] 2025-07-27 08:23:09,027 | INFO     | all data control threads have been joined
[2025-07-27 04:23:40] 2025-07-27 08:23:09,167 | INFO     | all job control threads have been joined
[2025-07-27 04:23:40] 2025-07-27 08:23:09,385 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:23:40] 2025-07-27 08:23:09,385 | INFO     | aborting loop
[2025-07-27 04:23:40] 2025-07-27 08:23:09,411 | INFO     | all payload control threads have been joined
[2025-07-27 04:23:40] 2025-07-27 08:23:09,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:23:40] 2025-07-27 08:23:09,516 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:09,590 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:09,694 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:09,698 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:09,798 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:10,033 | INFO     | [data] control thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:10,172 | INFO     | [job] control thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:10,245 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:10,391 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:10,417 | INFO     | [payload] control thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:10,513 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:10,828 | INFO     | [job] validate thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:11,005 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:11,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:23:40] 2025-07-27 08:23:11,486 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:11,513 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:23:40] 2025-07-27 08:23:12,519 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:15,060 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:23:40] 2025-07-27 08:23:16,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908575381312)>', '<ExcThread(monitor, started 139907938899712)>']
[2025-07-27 04:23:40] 2025-07-27 08:23:21,756 | INFO     | all workflow threads have been joined
[2025-07-27 04:23:40] 2025-07-27 08:23:21,757 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:23:40] 2025-07-27 08:23:21,757 | INFO     | traces error code: 0
[2025-07-27 04:23:40] 2025-07-27 08:23:21,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:23:40] 2025-07-27 08:23:39,594 | INFO     | PID=2263845 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 04:23:40] 2025-07-27 08:23:39,595 | INFO     | .. there are 15 such processes running
[2025-07-27 04:23:40] 2025-07-27 08:23:39,595 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:23:40] 2025-07-27 08:23:39,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:23:40] 2025-07-27 08:23:39,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:23:40] 2025-07-27 08:23:39,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:23:40] 2025-07-27 08:23:39,596 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 04:23:40] 2025-07-27 08:23:39,596 | INFO     | [monitor] control thread has ended
[2025-07-27 04:23:40] 2025-07-27 08:23:39,811 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:23:40] 2025-07-27 08:23:39,815 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:23:40] 2025-07-27 08:23:39,818 [wrapper] pilotpid: 2263845
[2025-07-27 04:23:40] 2025-07-27 08:23:39,823 [wrapper] Pilot exit status: 0
[2025-07-27 04:23:40] 2025-07-27 08:23:39,838 [wrapper] pandaids: 6745736147
[2025-07-27 04:23:40] 2025-07-27 08:23:39,913 [wrapper] cleanup supervisor_pilot 2387528 2263846
[2025-07-27 04:23:40] 2025-07-27 08:23:39,918 [wrapper] Test setup, not cleaning
[2025-07-27 04:23:40] 2025-07-27 08:23:39,921 [wrapper] apfmon messages muted
[2025-07-27 04:23:40] 2025-07-27 08:23:39,925 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:23:40] 2025-07-27 08:23:39,930 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:23:40]  *** Error codes and diagnostics ***
[2025-07-27 04:23:40]     "exeErrorCode": 0,
[2025-07-27 04:23:40]     "exeErrorDiag": "",
[2025-07-27 04:23:40]     "pilotErrorCode": 0,
[2025-07-27 04:23:40]     "pilotErrorDiag": "",
[2025-07-27 04:23:40]  *** Listing of results directory ***
[2025-07-27 04:23:40] total 429592
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 17:23 pilot3.tar.gz
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 17:29 queuedata.json
[2025-07-27 04:23:40] -rwx------. 1 boincer umatlas     36292 Jul 26 17:29 runpilot2-wrapper.sh
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas       100 Jul 27 03:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:23:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 03:10 run_atlas
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas       105 Jul 27 03:10 job.xml
[2025-07-27 04:23:40] -rw-r--r--. 2 boincer umatlas 233008618 Jul 27 03:10 EVNT.45743347._002561.pool.root.1
[2025-07-27 04:23:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:10 start_atlas.sh
[2025-07-27 04:23:40] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 03:10 shared
[2025-07-27 04:23:40] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 03:10 input.tar.gz
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas         0 Jul 27 03:10 boinc_lockfile
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 03:10 pandaJob.out
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas    980125 Jul 27 03:10 agis_schedconf.cvmfs.json
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas   1593052 Jul 27 03:10 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:23:40] drwx------. 4 boincer umatlas      4096 Jul 27 03:10 pilot3
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas      6843 Jul 27 04:19 init_data.xml
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas 201457766 Jul 27 04:22 HITS.45743349._044742.pool.root.1
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas       530 Jul 27 04:22 boinc_task_state.xml
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas      1052 Jul 27 04:22 memory_monitor_summary.json
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas    351775 Jul 27 04:22 log.45743349._044742.job.log.tgz.1
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas      7818 Jul 27 04:23 heartbeat.json
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 04:23 boinc_mmap_file
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas        27 Jul 27 04:23 wrapper_checkpoint.txt
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas        95 Jul 27 04:23 pilot_heartbeat.json
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas       893 Jul 27 04:23 pilotlog.txt
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas    432461 Jul 27 04:23 log.45743349._044742.job.log.1
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas       357 Jul 27 04:23 output.list
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:23 runtime_log
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas    798720 Jul 27 04:23 result.tar.gz
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 04:23 runtime_log.err
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas       655 Jul 27 04:23 KiGLDmFd1z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlCTLDmpHOBgn.diag
[2025-07-27 04:23:40] -rw-r--r--. 1 boincer umatlas     21651 Jul 27 04:23 stderr.txt
[2025-07-27 04:23:40] HITS file was successfully produced:
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas 201457766 Jul 27 04:22 shared/HITS.pool.root.1
[2025-07-27 04:23:40]  *** Contents of shared directory: ***
[2025-07-27 04:23:40] total 425620
[2025-07-27 04:23:40] -rw-r--r--. 2 boincer umatlas 233008618 Jul 27 03:10 ATLAS.root_0
[2025-07-27 04:23:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:10 start_atlas.sh
[2025-07-27 04:23:40] -rw-r--r--. 2 boincer umatlas    542892 Jul 27 03:10 input.tar.gz
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas 201457766 Jul 27 04:22 HITS.pool.root.1
[2025-07-27 04:23:40] -rw-------. 1 boincer umatlas    798720 Jul 27 04:23 result.tar.gz
04:23:42 (2260061): run_atlas exited; CPU time 43794.530194
04:23:42 (2260061): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN