Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:59:20 (555598): wrapper (7.7.26015): starting
18:59:20 (555598): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 18:59:20] Arguments: --nthreads 4
[2025-07-27 18:59:20] Threads: 4
[2025-07-27 18:59:20] Checking for CVMFS
[2025-07-27 18:59:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 18:59:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 18:59:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 18:59:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 18:59:20] 2.9.2.0 3030 1677 89928 148818 3 57 36078072 36864000 0 130560 0 1458397 99.992 54347 1532 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 18:59:20] CVMFS is ok
[2025-07-27 18:59:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 18:59:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 18:59:20] Further information can be found at the LHC@home message board.
[2025-07-27 18:59:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 18:59:20] Checking for apptainer binary...
[2025-07-27 18:59:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 18:59:20] Running /usr/bin/apptainer --version
[2025-07-27 18:59:20] apptainer version 1.4.1-1.1
[2025-07-27 18:59:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 18:59:20] thA383a
[2025-07-27 18:59:20] apptainer works
[2025-07-27 18:59:20] Set ATHENA_PROC_NUMBER=4
[2025-07-27 18:59:20] Set ATHENA_CORE_NUMBER=4
[2025-07-27 18:59:20] Starting ATLAS job with PandaID=6745776113
[2025-07-27 18:59:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 20:18:42]  *** The last 200 lines of the pilot log: ***
[2025-07-27 20:18:42]  is_tar=False
[2025-07-27 20:18:42]  lfn=log.45743349._045136.job.log.tgz.1
[2025-07-27 20:18:42]  mtime=0
[2025-07-27 20:18:42]  protocol_id=None
[2025-07-27 20:18:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 20:18:42]  replicas=None
[2025-07-27 20:18:42]  scope=mc23_13p6TeV
[2025-07-27 20:18:42]  status=None
[2025-07-27 20:18:42]  status_code=0
[2025-07-27 20:18:42]  storage_token=
[2025-07-27 20:18:42]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6745776113/log.45743349._045136.job.log.tgz.1
[2025-07-27 20:18:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/d1/log.45743349._045136.job.log.tgz.1
[2025-07-27 20:18:42]  workdir=None
[2025-07-27 20:18:42] ]
[2025-07-27 20:18:42] 2025-07-27 18:18:02,258 | INFO     | transferring file log.45743349._045136.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745776113/log.45743349._045136.job.log.tgz.1 to /local/data/boinc/
[2025-07-27 20:18:42] 2025-07-27 18:18:02,258 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745776113/log.45743349._045136.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0451
[2025-07-27 20:18:42] 2025-07-27 18:18:02,277 | INFO     | adding to output.list: log.45743349._045136.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/d1/log.45743349._045136.job.log.tg
[2025-07-27 20:18:42] 2025-07-27 18:18:02,278 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 20:18:42] 2025-07-27 18:18:02,278 | INFO     | summary of transferred files:
[2025-07-27 20:18:42] 2025-07-27 18:18:02,278 | INFO     |  -- lfn=log.45743349._045136.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 20:18:42] 2025-07-27 18:18:02,278 | INFO     | stage-out finished correctly
[2025-07-27 20:18:42] 2025-07-27 18:18:04,822 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 20:18:42] 2025-07-27 18:18:04,864 | INFO     | job 6745776113 has state=finished
[2025-07-27 20:18:42] 2025-07-27 18:18:04,864 | INFO     | preparing for final server update for job 6745776113 in state='finished'
[2025-07-27 20:18:42] 2025-07-27 18:18:04,864 | INFO     | this job has now completed (state=finished)
[2025-07-27 20:18:42] 2025-07-27 18:18:04,864 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 20:18:42] 2025-07-27 18:18:04,864 | INFO     | log transfer has been attempted: DONE
[2025-07-27 20:18:42] 2025-07-27 18:18:04,864 | INFO     | job 6745776113 has finished - writing final server update
[2025-07-27 20:18:42] 2025-07-27 18:18:04,865 | INFO     | total number of processed events: 400 (read)
[2025-07-27 20:18:42] 2025-07-27 18:18:04,865 | INFO     | executing command: lscpu
[2025-07-27 20:18:42] 2025-07-27 18:18:04,884 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 20:18:42] 2025-07-27 18:18:06,822 | WARNING  | process 565940 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 20:18:42] 2025-07-27 18:18:06,822 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745776113/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:18:42] 2025-07-27 18:18:06,877 | INFO     | number of running child processes to parent process 565940: 1
[2025-07-27 20:18:42] 2025-07-27 18:18:06,877 | INFO     | maximum number of monitored processes: 6
[2025-07-27 20:18:42] 2025-07-27 18:18:09,380 | INFO     | monitor loop #363: job 0:6745776113 is in state 'finished'
[2025-07-27 20:18:42] 2025-07-27 18:18:09,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 20:18:42] 2025-07-27 18:18:09,615 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 20:18:42] 2025-07-27 18:18:09,616 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3225.9183125
[2025-07-27 20:18:42] 2025-07-27 18:18:09,618 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745776113/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 20:18:42] 2025-07-27 18:18:09,618 | INFO     | extracted standard info from prmon json
[2025-07-27 20:18:42] 2025-07-27 18:18:09,618 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 20:18:42] 2025-07-27 18:18:09,618 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 20:18:42] 2025-07-27 18:18:09,618 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 20:18:42] 2025-07-27 18:18:09,618 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 20:18:42] 2025-07-27 18:18:09,619 | INFO     | fitting pss+swap vs Time
[2025-07-27 20:18:42] 2025-07-27 18:18:09,619 | INFO     | sum of square deviations: 106336877.5
[2025-07-27 20:18:42] 2025-07-27 18:18:09,619 | INFO     | sum of deviations: -6132322283.500001
[2025-07-27 20:18:42] 2025-07-27 18:18:09,619 | INFO     | mean x: 1753638001.5
[2025-07-27 20:18:42] 2025-07-27 18:18:09,619 | INFO     | mean y: 2456714.3571428573
[2025-07-27 20:18:42] 2025-07-27 18:18:09,619 | INFO     | -- intersect: 101132691554.95473
[2025-07-27 20:18:42] 2025-07-27 18:18:09,619 | INFO     | intersect: 101132691554.95473
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | chi2: 0.11202208543668016
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | -- intersect: 101132691554.95473
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | current memory leak: -57.67 B/s (using 70 data points, chi2=0.11)
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | could have reported an average CPU frequency of 3596 MHz (6 samples)
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | ..............................
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | . Timing measurements:
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | . get job = 0 s
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | . initial setup = 1 s
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | . payload setup = 5 s
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | . stage-in = 0 s
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | . payload execution = 4690 s
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | . stage-out = 0 s
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | . log creation = 0 s
[2025-07-27 20:18:42] 2025-07-27 18:18:09,620 | INFO     | ..............................
[2025-07-27 20:18:42] 2025-07-27 18:18:09,661 | INFO     | 
[2025-07-27 20:18:42] 2025-07-27 18:18:09,661 | INFO     | job summary report
[2025-07-27 20:18:42] 2025-07-27 18:18:09,661 | INFO     | --------------------------------------------------
[2025-07-27 20:18:42] 2025-07-27 18:18:09,661 | INFO     | PanDA job id: 6745776113
[2025-07-27 20:18:42] 2025-07-27 18:18:09,661 | INFO     | task id: 45743349
[2025-07-27 20:18:42] 2025-07-27 18:18:09,661 | INFO     | errors: (none)
[2025-07-27 20:18:42] 2025-07-27 18:18:09,661 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | pilot state: finished 
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | transexitcode: 0
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | exeerrorcode: 0
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | exeerrordiag: 
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | exitcode: 0
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | exitmsg: OK
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | cpuconsumptiontime: 17839 s
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | nevents: 400
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | neventsw: 0
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | pid: 565940
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | pgrp: 565940
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | corecount: 4
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | event service: False
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | sizes: {0: 2397307, 1: 2397506, 4: 2397768, 11: 2397796, 4698: 2424125, 4700: 2433129, 4702: 2433313, 4707: 2433507}
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | --------------------------------------------------
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | 
[2025-07-27 20:18:42] 2025-07-27 18:18:09,662 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 20:18:42] 2025-07-27 18:18:09,679 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,680 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 20:18:42] 2025-07-27 18:18:09,681 | INFO     | job 6745776113 has completed (purged errors)
[2025-07-27 20:18:42] 2025-07-27 18:18:09,681 | INFO     | overall cleanup function is called
[2025-07-27 20:18:42] 2025-07-27 18:18:10,687 | INFO     | --- collectZombieJob: --- 10, [565940]
[2025-07-27 20:18:42] 2025-07-27 18:18:10,688 | INFO     | zombie collector waiting for pid 565940
[2025-07-27 20:18:42] 2025-07-27 18:18:10,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 20:18:42] 2025-07-27 18:18:10,688 | INFO     | collected zombie processes
[2025-07-27 20:18:42] 2025-07-27 18:18:10,688 | INFO     | will attempt to kill all subprocesses of pid=565940
[2025-07-27 20:18:42] 2025-07-27 18:18:10,732 | INFO     | process IDs to be killed: [565940] (in reverse order)
[2025-07-27 20:18:42] 2025-07-27 18:18:10,765 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 20:18:42] 2025-07-27 18:18:10,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 20:18:42] 2025-07-27 18:18:10,767 | INFO     | did not find any defunct processes belonging to 565940
[2025-07-27 20:18:42] 2025-07-27 18:18:10,768 | INFO     | did not find any defunct processes belonging to 565940
[2025-07-27 20:18:42] 2025-07-27 18:18:10,768 | INFO     | ready for new job
[2025-07-27 20:18:42] 2025-07-27 18:18:10,768 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 20:18:42] 2025-07-27 18:18:10,769 | INFO     | ***************************************
[2025-07-27 20:18:42] 2025-07-27 18:18:10,769 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 20:18:42] 2025-07-27 18:18:10,769 | INFO     | ***************************************
[2025-07-27 20:18:42] 2025-07-27 18:18:10,769 | INFO     | 
[2025-07-27 20:18:42] 2025-07-27 18:18:10,770 | INFO     | architecture information:
[2025-07-27 20:18:42] 2025-07-27 18:18:10,770 | INFO     | executing command: cat /etc/os-release
[2025-07-27 20:18:42] 2025-07-27 18:18:10,783 | INFO     | cat /etc/os-release:
[2025-07-27 20:18:42] NAME="CentOS Linux"
[2025-07-27 20:18:42] VERSION="7 (Core)"
[2025-07-27 20:18:42] ID="centos"
[2025-07-27 20:18:42] ID_LIKE="rhel fedora"
[2025-07-27 20:18:42] VERSION_ID="7"
[2025-07-27 20:18:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 20:18:42] ANSI_COLOR="0;31"
[2025-07-27 20:18:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 20:18:42] HOME_URL="https://www.centos.org/"
[2025-07-27 20:18:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 20:18:42] 
[2025-07-27 20:18:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 20:18:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 20:18:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 20:18:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 20:18:42] 
[2025-07-27 20:18:42] 2025-07-27 18:18:10,784 | INFO     | ***************************************
[2025-07-27 20:18:42] 2025-07-27 18:18:11,287 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 20:18:42] 2025-07-27 18:18:11,303 | INFO     | sufficient remaining disk space (218749730816 B)
[2025-07-27 20:18:42] 2025-07-27 18:18:11,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 20:18:42] 2025-07-27 18:18:11,304 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 20:18:42] 2025-07-27 18:18:11,304 | INFO     | update_server=False
[2025-07-27 20:18:42] 2025-07-27 18:18:11,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 20:18:42] 2025-07-27 18:18:11,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 20:18:42] 2025-07-27 18:18:11,304 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:18:42] 2025-07-27 18:18:11,304 | INFO     | aborting loop
[2025-07-27 20:18:42] 2025-07-27 18:18:11,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 20:18:42] 2025-07-27 18:18:11,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 20:18:42] 2025-07-27 18:18:11,976 | INFO     | all job control threads have been joined
[2025-07-27 20:18:42] 2025-07-27 18:18:12,305 | INFO     | [job] job monitor thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:12,309 | INFO     | [job] retrieve thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:12,310 | INFO     | [job] queue monitor thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:12,319 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:12,385 | INFO     | all data control threads have been joined
[2025-07-27 20:18:42] 2025-07-27 18:18:12,396 | INFO     | [data] copytool_in thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:12,558 | INFO     | all payload control threads have been joined
[2025-07-27 20:18:42] 2025-07-27 18:18:12,800 | INFO     | [payload] validate_post thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:12,982 | INFO     | [job] control thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:13,156 | INFO     | [payload] failed_post thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:13,310 | INFO     | [data] copytool_out thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:13,391 | INFO     | [data] control thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:13,539 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:13,555 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:13,564 | INFO     | [payload] control thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:13,674 | INFO     | [job] validate thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:15,311 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:21,585 | INFO     | job.realtimelogging is not enabled
[2025-07-27 20:18:42] 2025-07-27 18:18:22,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 20:18:42] 2025-07-27 18:18:24,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140092925736768)>', '<ExcThread(monitor, started 140091766863616)>']
[2025-07-27 20:18:42] 2025-07-27 18:18:29,587 | INFO     | all workflow threads have been joined
[2025-07-27 20:18:42] 2025-07-27 18:18:29,587 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 20:18:42] 2025-07-27 18:18:29,588 | INFO     | traces error code: 0
[2025-07-27 20:18:42] 2025-07-27 18:18:29,588 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 20:18:42] 2025-07-27 18:18:42,243 | INFO     | PID=559306 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 20:18:42] 2025-07-27 18:18:42,244 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 20:18:42] 2025-07-27 18:18:42,244 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 20:18:42] 2025-07-27 18:18:42,244 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 20:18:42] 2025-07-27 18:18:42,244 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 20:18:42] 2025-07-27 18:18:42,244 | INFO     | [monitor] control thread has ended
[2025-07-27 20:18:42] 2025-07-27 18:18:42,321 [wrapper] ==== pilot stdout END ====
[2025-07-27 20:18:42] 2025-07-27 18:18:42,326 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 20:18:42] 2025-07-27 18:18:42,330 [wrapper] pilotpid: 559306
[2025-07-27 20:18:42] 2025-07-27 18:18:42,334 [wrapper] Pilot exit status: 0
[2025-07-27 20:18:42] 2025-07-27 18:18:42,346 [wrapper] pandaids: 6745776113
[2025-07-27 20:18:42] 2025-07-27 18:18:42,369 [wrapper] cleanup supervisor_pilot  578516 559307
[2025-07-27 20:18:42] 2025-07-27 18:18:42,373 [wrapper] Test setup, not cleaning
[2025-07-27 20:18:42] 2025-07-27 18:18:42,377 [wrapper] apfmon messages muted
[2025-07-27 20:18:42] 2025-07-27 18:18:42,381 [wrapper] ==== wrapper stdout END ====
[2025-07-27 20:18:42] 2025-07-27 18:18:42,384 [wrapper] ==== wrapper stderr END ====
[2025-07-27 20:18:42]  *** Error codes and diagnostics ***
[2025-07-27 20:18:42]     "exeErrorCode": 0,
[2025-07-27 20:18:42]     "exeErrorDiag": "",
[2025-07-27 20:18:42]     "pilotErrorCode": 0,
[2025-07-27 20:18:42]     "pilotErrorDiag": "",
[2025-07-27 20:18:42]  *** Listing of results directory ***
[2025-07-27 20:18:42] total 342140
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc    530466 Jul 26 23:42 pilot3.tar.gz
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc      5112 Jul 26 23:51 queuedata.json
[2025-07-27 20:18:42] -rwx------ 1 boinc boinc     36292 Jul 26 23:53 runpilot2-wrapper.sh
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc       100 Jul 27 18:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 20:18:42] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 18:59 run_atlas
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc       105 Jul 27 18:59 job.xml
[2025-07-27 20:18:42] -rw-r--r-- 2 boinc boinc 145345609 Jul 27 18:59 EVNT.45743347._002580.pool.root.1
[2025-07-27 20:18:42] -rw-r--r-- 2 boinc boinc    542900 Jul 27 18:59 input.tar.gz
[2025-07-27 20:18:42] -rw-r--r-- 2 boinc boinc     15095 Jul 27 18:59 start_atlas.sh
[2025-07-27 20:18:42] drwxrwx--x 2 boinc boinc      4096 Jul 27 18:59 shared
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc         0 Jul 27 18:59 boinc_setup_complete
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc      6380 Jul 27 18:59 init_data.xml
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc         0 Jul 27 18:59 boinc_lockfile
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc      2563 Jul 27 18:59 pandaJob.out
[2025-07-27 20:18:42] -rw------- 1 boinc boinc    980125 Jul 27 18:59 agis_schedconf.cvmfs.json
[2025-07-27 20:18:42] -rw------- 1 boinc boinc   1593052 Jul 27 18:59 agis_ddmendpoints.agis.ALL.json
[2025-07-27 20:18:42] drwx------ 4 boinc boinc      4096 Jul 27 18:59 pilot3
[2025-07-27 20:18:42] -rw------- 1 boinc boinc 199715943 Jul 27 20:17 HITS.45743349._045136.pool.root.1
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc       529 Jul 27 20:17 boinc_task_state.xml
[2025-07-27 20:18:42] -rw------- 1 boinc boinc        95 Jul 27 20:17 pilot_heartbeat.json
[2025-07-27 20:18:42] -rw------- 1 boinc boinc      1024 Jul 27 20:17 memory_monitor_summary.json
[2025-07-27 20:18:42] -rw------- 1 boinc boinc    245015 Jul 27 20:18 log.45743349._045136.job.log.tgz.1
[2025-07-27 20:18:42] -rw------- 1 boinc boinc      7767 Jul 27 20:18 heartbeat.json
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc        27 Jul 27 20:18 wrapper_checkpoint.txt
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc      8192 Jul 27 20:18 boinc_mmap_file
[2025-07-27 20:18:42] -rw------- 1 boinc boinc       746 Jul 27 20:18 pilotlog.txt
[2025-07-27 20:18:42] -rw------- 1 boinc boinc    461552 Jul 27 20:18 log.45743349._045136.job.log.1
[2025-07-27 20:18:42] -rw------- 1 boinc boinc       357 Jul 27 20:18 output.list
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc       620 Jul 27 20:18 runtime_log
[2025-07-27 20:18:42] -rw------- 1 boinc boinc    727040 Jul 27 20:18 result.tar.gz
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc      8739 Jul 27 20:18 runtime_log.err
[2025-07-27 20:18:42] -rw------- 1 boinc boinc       659 Jul 27 20:18 IXvKDmS01z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyGTLDmTtPoTo.diag
[2025-07-27 20:18:42] -rw-r--r-- 1 boinc boinc     21576 Jul 27 20:18 stderr.txt
[2025-07-27 20:18:42] HITS file was successfully produced:
[2025-07-27 20:18:42] -rw------- 1 boinc boinc 199715943 Jul 27 20:17 shared/HITS.pool.root.1
[2025-07-27 20:18:42]  *** Contents of shared directory: ***
[2025-07-27 20:18:42] total 338244
[2025-07-27 20:18:42] -rw-r--r-- 2 boinc boinc 145345609 Jul 27 18:59 ATLAS.root_0
[2025-07-27 20:18:42] -rw-r--r-- 2 boinc boinc    542900 Jul 27 18:59 input.tar.gz
[2025-07-27 20:18:42] -rw-r--r-- 2 boinc boinc     15095 Jul 27 18:59 start_atlas.sh
[2025-07-27 20:18:42] -rw------- 1 boinc boinc 199715943 Jul 27 20:17 HITS.pool.root.1
[2025-07-27 20:18:42] -rw------- 1 boinc boinc    727040 Jul 27 20:18 result.tar.gz
20:18:43 (555598): run_atlas exited; CPU time 17850.293921
20:18:43 (555598): called boinc_finish(0)

</stderr_txt>
]]>

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