Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:43:55 (360291): wrapper (7.7.26015): starting
02:43:55 (360291): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 02:43:55] Arguments: --nthreads 12
[2025-07-27 02:43:55] Threads: 12
[2025-07-27 02:43:55] Checking for CVMFS
[2025-07-27 02:43:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:43:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:43:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:43:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:43:55] 2.13.1.0 5053 10408 179040 148803 2 105 29970466 40960000 5001 16776704 0 11674973 99.871 14312347 48692 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 02:43:55] CVMFS is ok
[2025-07-27 02:43:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:43:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:43:56] Further information can be found at the LHC@home message board.
[2025-07-27 02:43:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:43:56] Checking for apptainer binary...
[2025-07-27 02:43:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:43:56] Running /usr/bin/apptainer --version
[2025-07-27 02:43:56] apptainer version 1.4.1-1.el9
[2025-07-27 02:43:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:43:56] c-210-33-1.aglt2.org
[2025-07-27 02:43:56] apptainer works
[2025-07-27 02:43:56] Set ATHENA_PROC_NUMBER=12
[2025-07-27 02:43:56] Set ATHENA_CORE_NUMBER=12
[2025-07-27 02:43:56] Starting ATLAS job with PandaID=6745902243
[2025-07-27 02:43:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:00:02]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:00:02]  status=None
[2025-07-27 04:00:02]  status_code=0
[2025-07-27 04:00:02]  storage_token=
[2025-07-27 04:00:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745902243/log.45758861._000109.job.log.tgz.1
[2025-07-27 04:00:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/1d/log.45758861._000109.job.log.tgz.1
[2025-07-27 04:00:02]  workdir=None
[2025-07-27 04:00:02] ]
[2025-07-27 04:00:02] 2025-07-27 07:59:19,806 | INFO     | transferring file log.45758861._000109.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745902243/log.45758861._000109.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:00:02] 2025-07-27 07:59:19,807 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745902243/log.45758861._000109.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758861._000109.job
[2025-07-27 04:00:02] 2025-07-27 07:59:19,825 | INFO     | adding to output.list: log.45758861._000109.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/1d/log.45758861._000109.job.log.tg
[2025-07-27 04:00:02] 2025-07-27 07:59:19,826 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:00:02] 2025-07-27 07:59:19,827 | INFO     | summary of transferred files:
[2025-07-27 04:00:02] 2025-07-27 07:59:19,827 | INFO     |  -- lfn=log.45758861._000109.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:00:02] 2025-07-27 07:59:19,828 | INFO     | stage-out finished correctly
[2025-07-27 04:00:02] 2025-07-27 07:59:20,058 | INFO     | PID=363904 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 04:00:02] 2025-07-27 07:59:20,058 | INFO     | .. there are 8 such processes running
[2025-07-27 04:00:02] 2025-07-27 07:59:22,387 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:00:02] 2025-07-27 07:59:24,032 | WARNING  | process 372807 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 04:00:02] 2025-07-27 07:59:24,032 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745902243/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:00:02] 2025-07-27 07:59:24,217 | INFO     | number of running child processes to parent process 372807: 1
[2025-07-27 04:00:02] 2025-07-27 07:59:24,217 | INFO     | maximum number of monitored processes: 6
[2025-07-27 04:00:02] 2025-07-27 07:59:24,875 | INFO     | job 6745902243 has state=finished
[2025-07-27 04:00:02] 2025-07-27 07:59:24,875 | INFO     | preparing for final server update for job 6745902243 in state='finished'
[2025-07-27 04:00:02] 2025-07-27 07:59:24,876 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:00:02] 2025-07-27 07:59:24,876 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:00:02] 2025-07-27 07:59:24,876 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:00:02] 2025-07-27 07:59:24,876 | INFO     | job 6745902243 has finished - writing final server update
[2025-07-27 04:00:02] 2025-07-27 07:59:24,876 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:00:02] 2025-07-27 07:59:24,877 | INFO     | executing command: lscpu
[2025-07-27 04:00:02] 2025-07-27 07:59:24,924 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:00:02] 2025-07-27 07:59:26,720 | INFO     | monitor loop #340: job 0:6745902243 is in state 'finished'
[2025-07-27 04:00:02] 2025-07-27 07:59:26,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:00:02] 2025-07-27 07:59:29,222 | INFO     | monitor loop #341: job 0:6745902243 is in state 'finished'
[2025-07-27 04:00:02] 2025-07-27 07:59:29,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:00:02] 2025-07-27 07:59:29,227 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 04:00:02] 2025-07-27 07:59:29,232 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2791.280785714286
[2025-07-27 04:00:02] 2025-07-27 07:59:29,240 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745902243/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:00:02] 2025-07-27 07:59:29,240 | INFO     | extracted standard info from prmon json
[2025-07-27 04:00:02] 2025-07-27 07:59:29,240 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:00:02] 2025-07-27 07:59:29,240 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:00:02] 2025-07-27 07:59:29,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:00:02] 2025-07-27 07:59:29,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:00:02] 2025-07-27 07:59:29,243 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:00:02] 2025-07-27 07:59:29,243 | INFO     | sum of square deviations: 93240818.0
[2025-07-27 04:00:02] 2025-07-27 07:59:29,243 | INFO     | sum of deviations: -10744143195.0
[2025-07-27 04:00:02] 2025-07-27 07:59:29,243 | INFO     | mean x: 1753600993.0
[2025-07-27 04:00:02] 2025-07-27 07:59:29,243 | INFO     | mean y: 2905852.1641791044
[2025-07-27 04:00:02] 2025-07-27 07:59:29,243 | INFO     | -- intersect: 202070418555.51898
[2025-07-27 04:00:02] 2025-07-27 07:59:29,243 | INFO     | intersect: 202070418555.51898
[2025-07-27 04:00:02] 2025-07-27 07:59:29,244 | INFO     | chi2: 0.12688866055541598
[2025-07-27 04:00:02] 2025-07-27 07:59:29,244 | INFO     | -- intersect: 202070418555.51898
[2025-07-27 04:00:02] 2025-07-27 07:59:29,244 | INFO     | current memory leak: -115.23 B/s (using 67 data points, chi2=0.13)
[2025-07-27 04:00:02] 2025-07-27 07:59:29,244 | INFO     | could have reported an average CPU frequency of 2792 MHz (6 samples)
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | ..............................
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | . Timing measurements:
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | . get job = 0 s
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | . initial setup = 2 s
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | . payload setup = 7 s
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | . stage-in = 0 s
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | . payload execution = 4484 s
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | . stage-out = 0 s
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | . log creation = 0 s
[2025-07-27 04:00:02] 2025-07-27 07:59:29,245 | INFO     | ..............................
[2025-07-27 04:00:02] 2025-07-27 07:59:29,322 | INFO     | 
[2025-07-27 04:00:02] 2025-07-27 07:59:29,322 | INFO     | job summary report
[2025-07-27 04:00:02] 2025-07-27 07:59:29,322 | INFO     | --------------------------------------------------
[2025-07-27 04:00:02] 2025-07-27 07:59:29,322 | INFO     | PanDA job id: 6745902243
[2025-07-27 04:00:02] 2025-07-27 07:59:29,322 | INFO     | task id: 45758861
[2025-07-27 04:00:02] 2025-07-27 07:59:29,322 | INFO     | errors: (none)
[2025-07-27 04:00:02] 2025-07-27 07:59:29,322 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | pilot state: finished 
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | transexitcode: 0
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | exeerrorcode: 0
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | exeerrordiag: 
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | exitcode: 0
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | exitmsg: OK
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | cpuconsumptiontime: 48436 s
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | nevents: 400
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | neventsw: 0
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | pid: 372807
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | pgrp: 372807
[2025-07-27 04:00:02] 2025-07-27 07:59:29,323 | INFO     | corecount: 12
[2025-07-27 04:00:02] 2025-07-27 07:59:29,324 | INFO     | event service: False
[2025-07-27 04:00:02] 2025-07-27 07:59:29,324 | INFO     | sizes: {0: 2397434, 5: 2397696, 11: 2397752, 4496: 2423854, 4497: 2432852, 4499: 2432908, 4506: 2433230}
[2025-07-27 04:00:02] 2025-07-27 07:59:29,324 | INFO     | --------------------------------------------------
[2025-07-27 04:00:02] 2025-07-27 07:59:29,324 | INFO     | 
[2025-07-27 04:00:02] 2025-07-27 07:59:29,324 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 04:00:02] 2025-07-27 07:59:29,346 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,346 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,346 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,347 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:00:02] 2025-07-27 07:59:29,348 | INFO     | job 6745902243 has completed (purged errors)
[2025-07-27 04:00:02] 2025-07-27 07:59:29,348 | INFO     | overall cleanup function is called
[2025-07-27 04:00:02] 2025-07-27 07:59:30,355 | INFO     | --- collectZombieJob: --- 10, [372807]
[2025-07-27 04:00:02] 2025-07-27 07:59:30,356 | INFO     | zombie collector waiting for pid 372807
[2025-07-27 04:00:02] 2025-07-27 07:59:30,356 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:00:02] 2025-07-27 07:59:30,356 | INFO     | collected zombie processes
[2025-07-27 04:00:02] 2025-07-27 07:59:30,356 | INFO     | will attempt to kill all subprocesses of pid=372807
[2025-07-27 04:00:02] 2025-07-27 07:59:30,642 | INFO     | process IDs to be killed: [372807] (in reverse order)
[2025-07-27 04:00:02] 2025-07-27 07:59:30,710 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:00:02] 2025-07-27 07:59:30,711 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:00:02] 2025-07-27 07:59:30,719 | INFO     | did not find any defunct processes belonging to 372807
[2025-07-27 04:00:02] 2025-07-27 07:59:30,727 | INFO     | did not find any defunct processes belonging to 372807
[2025-07-27 04:00:02] 2025-07-27 07:59:30,727 | INFO     | ready for new job
[2025-07-27 04:00:02] 2025-07-27 07:59:30,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:00:02] 2025-07-27 07:59:30,729 | INFO     | ***************************************
[2025-07-27 04:00:02] 2025-07-27 07:59:30,729 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:00:02] 2025-07-27 07:59:30,729 | INFO     | ***************************************
[2025-07-27 04:00:02] 2025-07-27 07:59:30,729 | INFO     | 
[2025-07-27 04:00:02] 2025-07-27 07:59:30,731 | INFO     | architecture information:
[2025-07-27 04:00:02] 2025-07-27 07:59:30,732 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:00:02] 2025-07-27 07:59:30,749 | INFO     | cat /etc/os-release:
[2025-07-27 04:00:02] NAME="CentOS Linux"
[2025-07-27 04:00:02] VERSION="7 (Core)"
[2025-07-27 04:00:02] ID="centos"
[2025-07-27 04:00:02] ID_LIKE="rhel fedora"
[2025-07-27 04:00:02] VERSION_ID="7"
[2025-07-27 04:00:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:00:02] ANSI_COLOR="0;31"
[2025-07-27 04:00:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:00:02] HOME_URL="https://www.centos.org/"
[2025-07-27 04:00:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:00:02] 
[2025-07-27 04:00:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:00:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:00:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:00:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:00:02] 
[2025-07-27 04:00:02] 2025-07-27 07:59:30,750 | INFO     | ***************************************
[2025-07-27 04:00:02] 2025-07-27 07:59:31,253 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 04:00:02] 2025-07-27 07:59:31,268 | INFO     | sufficient remaining disk space (75281465344 B)
[2025-07-27 04:00:02] 2025-07-27 07:59:31,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:00:02] 2025-07-27 07:59:31,269 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:00:02] 2025-07-27 07:59:31,269 | INFO     | update_server=False
[2025-07-27 04:00:02] 2025-07-27 07:59:31,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:00:02] 2025-07-27 07:59:31,269 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:00:02] 2025-07-27 07:59:31,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:00:02] 2025-07-27 07:59:31,339 | INFO     | all payload control threads have been joined
[2025-07-27 04:00:02] 2025-07-27 07:59:31,725 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 04:00:02] 2025-07-27 07:59:31,726 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 04:00:02] 2025-07-27 07:59:31,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:00:02] 2025-07-27 07:59:31,726 | INFO     | will abort loop
[2025-07-27 04:00:02] 2025-07-27 07:59:31,845 | INFO     | all data control threads have been joined
[2025-07-27 04:00:02] 2025-07-27 07:59:32,274 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:32,275 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:32,303 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:32,344 | INFO     | [payload] control thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:32,582 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:32,731 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:32,850 | INFO     | [data] control thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:32,948 | INFO     | all job control threads have been joined
[2025-07-27 04:00:02] 2025-07-27 07:59:32,974 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:00:02] 2025-07-27 07:59:33,024 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:33,210 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:33,276 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:33,277 | INFO     | [job] validate thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:33,387 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:33,581 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:33,954 | INFO     | [job] control thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:36,980 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:41,375 | INFO     | job.realtimelogging is not enabled
[2025-07-27 04:00:02] 2025-07-27 07:59:42,381 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:00:02] 2025-07-27 07:59:43,121 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139702498613056)>', '<ExcThread(monitor, started 139702225049344)>']
[2025-07-27 04:00:02] 2025-07-27 07:59:48,146 | INFO     | all workflow threads have been joined
[2025-07-27 04:00:02] 2025-07-27 07:59:48,146 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:00:02] 2025-07-27 07:59:48,147 | INFO     | traces error code: 0
[2025-07-27 04:00:02] 2025-07-27 07:59:48,147 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:00:02] 2025-07-27 08:00:02,417 | INFO     | PID=363904 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 04:00:02] 2025-07-27 08:00:02,417 | INFO     | .. there are 8 such processes running
[2025-07-27 04:00:02] 2025-07-27 08:00:02,417 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:00:02] 2025-07-27 08:00:02,418 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:00:02] 2025-07-27 08:00:02,418 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:00:02] 2025-07-27 08:00:02,418 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:00:02] 2025-07-27 08:00:02,418 | INFO     | [monitor] control thread has ended
[2025-07-27 04:00:02] 2025-07-27 08:00:02,616 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:00:02] 2025-07-27 08:00:02,619 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:00:02] 2025-07-27 08:00:02,623 [wrapper] pilotpid: 363904
[2025-07-27 04:00:02] 2025-07-27 08:00:02,626 [wrapper] Pilot exit status: 0
[2025-07-27 04:00:02] 2025-07-27 08:00:02,638 [wrapper] pandaids: 6745902243
[2025-07-27 04:00:02] 2025-07-27 08:00:02,689 [wrapper] cleanup supervisor_pilot  471820 363905
[2025-07-27 04:00:02] 2025-07-27 08:00:02,693 [wrapper] Test setup, not cleaning
[2025-07-27 04:00:02] 2025-07-27 08:00:02,696 [wrapper] apfmon messages muted
[2025-07-27 04:00:02] 2025-07-27 08:00:02,699 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:00:02] 2025-07-27 08:00:02,703 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:00:02]  *** Error codes and diagnostics ***
[2025-07-27 04:00:02]     "exeErrorCode": 0,
[2025-07-27 04:00:02]     "exeErrorDiag": "",
[2025-07-27 04:00:02]     "pilotErrorCode": 0,
[2025-07-27 04:00:02]     "pilotErrorDiag": "",
[2025-07-27 04:00:02]  *** Listing of results directory ***
[2025-07-27 04:00:02] total 412040
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:58 pilot3.tar.gz
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:01 queuedata.json
[2025-07-27 04:00:02] -rwx------. 1 boincer umatlas     36292 Jul 26 20:01 runpilot2-wrapper.sh
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas       100 Jul 27 02:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:00:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 02:43 run_atlas
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas       105 Jul 27 02:43 job.xml
[2025-07-27 04:00:02] -rw-r--r--. 2 boincer umatlas 240927338 Jul 27 02:43 EVNT.45758859._000005.pool.root.1
[2025-07-27 04:00:02] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:43 start_atlas.sh
[2025-07-27 04:00:02] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 02:43 shared
[2025-07-27 04:00:02] -rw-r--r--. 2 boincer umatlas    542885 Jul 27 02:43 input.tar.gz
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas         0 Jul 27 02:43 boinc_lockfile
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas      2575 Jul 27 02:43 pandaJob.out
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas    980125 Jul 27 02:44 agis_schedconf.cvmfs.json
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas   1593052 Jul 27 02:44 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:00:02] drwx------. 4 boincer umatlas      4096 Jul 27 02:44 pilot3
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas      6840 Jul 27 03:55 init_data.xml
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas 175493521 Jul 27 03:58 HITS.45758861._000109.pool.root.1
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas       529 Jul 27 03:58 boinc_task_state.xml
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas        95 Jul 27 03:59 pilot_heartbeat.json
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas      1040 Jul 27 03:59 memory_monitor_summary.json
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas    359894 Jul 27 03:59 log.45758861._000109.job.log.tgz.1
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas      7824 Jul 27 03:59 heartbeat.json
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas        27 Jul 27 03:59 wrapper_checkpoint.txt
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 03:59 boinc_mmap_file
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas       821 Jul 27 04:00 pilotlog.txt
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas    454659 Jul 27 04:00 log.45758861._000109.job.log.1
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas       357 Jul 27 04:00 output.list
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:00 runtime_log
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas    829440 Jul 27 04:00 result.tar.gz
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas      8672 Jul 27 04:00 runtime_log.err
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas       654 Jul 27 04:00 lY8NDm003z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPaTLDmGijBIm.diag
[2025-07-27 04:00:02] -rw-r--r--. 1 boincer umatlas     22097 Jul 27 04:00 stderr.txt
[2025-07-27 04:00:02] HITS file was successfully produced:
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas 175493521 Jul 27 03:58 shared/HITS.pool.root.1
[2025-07-27 04:00:02]  *** Contents of shared directory: ***
[2025-07-27 04:00:02] total 408036
[2025-07-27 04:00:02] -rw-r--r--. 2 boincer umatlas 240927338 Jul 27 02:43 ATLAS.root_0
[2025-07-27 04:00:02] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:43 start_atlas.sh
[2025-07-27 04:00:02] -rw-r--r--. 2 boincer umatlas    542885 Jul 27 02:43 input.tar.gz
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas 175493521 Jul 27 03:58 HITS.pool.root.1
[2025-07-27 04:00:02] -rw-------. 1 boincer umatlas    829440 Jul 27 04:00 result.tar.gz
04:00:04 (360291): run_atlas exited; CPU time 48509.537647
04:00:04 (360291): called boinc_finish(0)

</stderr_txt>
]]>

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