Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:16:42 (1291175): wrapper (7.7.26015): starting
01:16:42 (1291175): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 01:16:42] Arguments: --nthreads 8
[2025-07-27 01:16:42] Threads: 8
[2025-07-27 01:16:42] Checking for CVMFS
[2025-07-27 01:16:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 01:16:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 01:16:42] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 01:16:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 01:16:42] 2.13.1.0 2445429 3901 89060 148801 2 185 34803063 40960000 13696 16776704 0 62510647 99.999 138630 59935 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 01:16:42] CVMFS is ok
[2025-07-27 01:16:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 01:16:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 01:16:42] Further information can be found at the LHC@home message board.
[2025-07-27 01:16:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 01:16:42] Checking for apptainer binary...
[2025-07-27 01:16:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 01:16:42] Running /usr/bin/apptainer --version
[2025-07-27 01:16:42] apptainer version 1.4.1-1.el9
[2025-07-27 01:16:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 01:16:42] c-208-40.aglt2.org
[2025-07-27 01:16:42] apptainer works
[2025-07-27 01:16:42] Set ATHENA_PROC_NUMBER=8
[2025-07-27 01:16:42] Set ATHENA_CORE_NUMBER=8
[2025-07-27 01:16:42] Starting ATLAS job with PandaID=6745907823
[2025-07-27 01:16:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:40:05 (1291175): BOINC client no longer exists - exiting
01:40:05 (1291175): timer handler: client dead, exiting
01:46:39 (1478901): wrapper (7.7.26015): starting
01:46:39 (1478901): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 01:46:39] Arguments: --nthreads 8
[2025-07-27 01:46:39] Threads: 8
[2025-07-27 01:46:39] This job has been restarted, cleaning up previous attempt
[2025-07-27 01:46:39] Checking for CVMFS
[2025-07-27 01:46:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 01:46:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 01:46:39] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 01:46:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 01:46:40] 2.13.1.0 2445429 3931 83364 148801 0 188 34822050 40960000 0 16776704 0 63004787 99.999 138702 59862 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 01:46:40] CVMFS is ok
[2025-07-27 01:46:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 01:46:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 01:46:40] Further information can be found at the LHC@home message board.
[2025-07-27 01:46:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 01:46:40] Checking for apptainer binary...
[2025-07-27 01:46:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 01:46:40] Running /usr/bin/apptainer --version
[2025-07-27 01:46:40] apptainer version 1.4.1-1.el9
[2025-07-27 01:46:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 01:46:40] c-208-40.aglt2.org
[2025-07-27 01:46:40] apptainer works
[2025-07-27 01:46:40] Set ATHENA_PROC_NUMBER=8
[2025-07-27 01:46:40] Set ATHENA_CORE_NUMBER=8
[2025-07-27 01:46:40] Starting ATLAS job with PandaID=6745907823
[2025-07-27 01:46:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 02:55:46]  *** The last 200 lines of the pilot log: ***
[2025-07-27 02:55:46]  status_code=0
[2025-07-27 02:55:46]  storage_token=
[2025-07-27 02:55:46]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6745907823/log.45758450._000084.job.log.tgz.1
[2025-07-27 02:55:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/b0/log.45758450._000084.job.log.tgz.1
[2025-07-27 02:55:46]  workdir=None
[2025-07-27 02:55:46] ]
[2025-07-27 02:55:46] 2025-07-27 06:55:09,994 | INFO     | transferring file log.45758450._000084.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6745907823/log.45758450._000084.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 02:55:46] 2025-07-27 06:55:09,994 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6745907823/log.45758450._000084.job.log.tgz.1 /tmp/boinchome/slots/3/log.45758450._000084.job
[2025-07-27 02:55:46] 2025-07-27 06:55:10,011 | INFO     | adding to output.list: log.45758450._000084.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/b0/log.45758450._000084.job.log.tg
[2025-07-27 02:55:46] 2025-07-27 06:55:10,012 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 02:55:46] 2025-07-27 06:55:10,012 | INFO     | summary of transferred files:
[2025-07-27 02:55:46] 2025-07-27 06:55:10,012 | INFO     |  -- lfn=log.45758450._000084.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 02:55:46] 2025-07-27 06:55:10,012 | INFO     | stage-out finished correctly
[2025-07-27 02:55:46] 2025-07-27 06:55:11,144 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 02:55:46] 2025-07-27 06:55:11,201 | INFO     | job 6745907823 has state=finished
[2025-07-27 02:55:46] 2025-07-27 06:55:11,202 | INFO     | preparing for final server update for job 6745907823 in state='finished'
[2025-07-27 02:55:46] 2025-07-27 06:55:11,203 | INFO     | this job has now completed (state=finished)
[2025-07-27 02:55:46] 2025-07-27 06:55:11,203 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 02:55:46] 2025-07-27 06:55:11,203 | INFO     | log transfer has been attempted: DONE
[2025-07-27 02:55:46] 2025-07-27 06:55:11,203 | INFO     | job 6745907823 has finished - writing final server update
[2025-07-27 02:55:46] 2025-07-27 06:55:11,203 | INFO     | total number of processed events: 400 (read)
[2025-07-27 02:55:46] 2025-07-27 06:55:11,204 | INFO     | executing command: lscpu
[2025-07-27 02:55:46] 2025-07-27 06:55:11,258 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 02:55:46] 2025-07-27 06:55:11,449 | INFO     | PID=1538693 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 02:55:46] 2025-07-27 06:55:11,449 | INFO     | .. there are 16 such processes running
[2025-07-27 02:55:46] 2025-07-27 06:55:12,449 | INFO     | 4106s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 02:55:46] 2025-07-27 06:55:13,864 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 02:55:46] 2025-07-27 06:55:13,868 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3644.8193828125027
[2025-07-27 02:55:46] 2025-07-27 06:55:13,876 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745907823/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 02:55:46] 2025-07-27 06:55:13,876 | INFO     | extracted standard info from prmon json
[2025-07-27 02:55:46] 2025-07-27 06:55:13,876 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 02:55:46] 2025-07-27 06:55:13,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 02:55:46] 2025-07-27 06:55:13,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 02:55:46] 2025-07-27 06:55:13,876 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | fitting pss+swap vs Time
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | sum of square deviations: 66959395.0
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | sum of deviations: -66399445.499999985
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | mean x: 1753597335.5
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | mean y: 2521373.65
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | -- intersect: 1741454210.5950985
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | intersect: 1741454210.5950985
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | chi2: 0.0012958663180356147
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | -- intersect: 1741454210.5950985
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | current memory leak: -0.99 B/s (using 60 data points, chi2=0.00)
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | could have reported an average CPU frequency of 3742 MHz (6 samples)
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | ..............................
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | . Timing measurements:
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | . get job = 0 s
[2025-07-27 02:55:46] 2025-07-27 06:55:13,877 | INFO     | . initial setup = 0 s
[2025-07-27 02:55:46] 2025-07-27 06:55:13,878 | INFO     | . payload setup = 4 s
[2025-07-27 02:55:46] 2025-07-27 06:55:13,878 | INFO     | . stage-in = 0 s
[2025-07-27 02:55:46] 2025-07-27 06:55:13,878 | INFO     | . payload execution = 4080 s
[2025-07-27 02:55:46] 2025-07-27 06:55:13,878 | INFO     | . stage-out = 0 s
[2025-07-27 02:55:46] 2025-07-27 06:55:13,878 | INFO     | . log creation = 0 s
[2025-07-27 02:55:46] 2025-07-27 06:55:13,878 | INFO     | ..............................
[2025-07-27 02:55:46] 2025-07-27 06:55:14,054 | INFO     | 
[2025-07-27 02:55:46] 2025-07-27 06:55:14,054 | INFO     | job summary report
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | --------------------------------------------------
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | PanDA job id: 6745907823
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | task id: 45758450
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | errors: (none)
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | pilot state: finished 
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | transexitcode: 0
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | exeerrorcode: 0
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | exeerrordiag: 
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | exitcode: 0
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | exitmsg: OK
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | cpuconsumptiontime: 30775 s
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | nevents: 400
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | neventsw: 0
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | pid: 1644615
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | pgrp: 1644615
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | corecount: 8
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | event service: False
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | sizes: {0: 2397459, 3: 2397721, 11: 2397749, 4089: 2432784, 4090: 2432784, 4093: 2432978}
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | --------------------------------------------------
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | 
[2025-07-27 02:55:46] 2025-07-27 06:55:14,055 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-27 02:55:46] 2025-07-27 06:55:14,068 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,068 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,068 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,068 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | job 6745907823 has completed (purged errors)
[2025-07-27 02:55:46] 2025-07-27 06:55:14,069 | INFO     | overall cleanup function is called
[2025-07-27 02:55:46] 2025-07-27 06:55:15,077 | INFO     | --- collectZombieJob: --- 10, [1644615]
[2025-07-27 02:55:46] 2025-07-27 06:55:15,077 | INFO     | zombie collector waiting for pid 1644615
[2025-07-27 02:55:46] 2025-07-27 06:55:15,077 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 02:55:46] 2025-07-27 06:55:15,077 | INFO     | collected zombie processes
[2025-07-27 02:55:46] 2025-07-27 06:55:15,077 | INFO     | will attempt to kill all subprocesses of pid=1644615
[2025-07-27 02:55:46] 2025-07-27 06:55:15,425 | INFO     | process IDs to be killed: [1644615] (in reverse order)
[2025-07-27 02:55:46] 2025-07-27 06:55:15,536 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 02:55:46] 2025-07-27 06:55:15,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 02:55:46] 2025-07-27 06:55:15,552 | INFO     | did not find any defunct processes belonging to 1644615
[2025-07-27 02:55:46] 2025-07-27 06:55:15,565 | INFO     | did not find any defunct processes belonging to 1644615
[2025-07-27 02:55:46] 2025-07-27 06:55:15,565 | INFO     | ready for new job
[2025-07-27 02:55:46] 2025-07-27 06:55:15,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 02:55:46] 2025-07-27 06:55:15,566 | INFO     | ***************************************
[2025-07-27 02:55:46] 2025-07-27 06:55:15,566 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 02:55:46] 2025-07-27 06:55:15,566 | INFO     | ***************************************
[2025-07-27 02:55:46] 2025-07-27 06:55:15,566 | INFO     | 
[2025-07-27 02:55:46] 2025-07-27 06:55:15,571 | INFO     | architecture information:
[2025-07-27 02:55:46] 2025-07-27 06:55:15,571 | INFO     | executing command: cat /etc/os-release
[2025-07-27 02:55:46] 2025-07-27 06:55:15,583 | INFO     | cat /etc/os-release:
[2025-07-27 02:55:46] NAME="CentOS Linux"
[2025-07-27 02:55:46] VERSION="7 (Core)"
[2025-07-27 02:55:46] ID="centos"
[2025-07-27 02:55:46] ID_LIKE="rhel fedora"
[2025-07-27 02:55:46] VERSION_ID="7"
[2025-07-27 02:55:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 02:55:46] ANSI_COLOR="0;31"
[2025-07-27 02:55:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 02:55:46] HOME_URL="https://www.centos.org/"
[2025-07-27 02:55:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 02:55:46] 
[2025-07-27 02:55:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 02:55:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 02:55:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 02:55:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 02:55:46] 
[2025-07-27 02:55:46] 2025-07-27 06:55:15,584 | INFO     | ***************************************
[2025-07-27 02:55:46] 2025-07-27 06:55:15,980 | WARNING  | process 1644615 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 02:55:46] 2025-07-27 06:55:16,086 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-27 02:55:46] 2025-07-27 06:55:16,101 | INFO     | sufficient remaining disk space (162514599936 B)
[2025-07-27 02:55:46] 2025-07-27 06:55:16,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 02:55:46] 2025-07-27 06:55:16,102 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 02:55:46] 2025-07-27 06:55:16,102 | INFO     | update_server=False
[2025-07-27 02:55:46] 2025-07-27 06:55:16,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 02:55:46] 2025-07-27 06:55:16,103 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 02:55:46] 2025-07-27 06:55:16,121 | INFO     | all job control threads have been joined
[2025-07-27 02:55:46] 2025-07-27 06:55:16,240 | INFO     | using path: /tmp/boinchome/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 02:55:46] 2025-07-27 06:55:16,241 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/3/PanDA_Pilot-6745907823/payload.stdout) since it has not been created yet
[2025-07-27 02:55:46] 2025-07-27 06:55:16,241 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-27 02:55:46] 2025-07-27 06:55:16,255 | INFO     | sufficient remaining disk space (162514599936 B)
[2025-07-27 02:55:46] 2025-07-27 06:55:16,255 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-07-27 02:55:46] 2025-07-27 06:55:16,255 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/3/PanDA_Pilot-6745907823/HITS.45758450._000084.pool.root.1 since it does not exist
[2025-07-27 02:55:46] 2025-07-27 06:55:16,492 | INFO     | all data control threads have been joined
[2025-07-27 02:55:46] 2025-07-27 06:55:16,581 | INFO     | number of running child processes to parent process 1644615: 1
[2025-07-27 02:55:46] 2025-07-27 06:55:16,581 | INFO     | maximum number of monitored processes: 6
[2025-07-27 02:55:46] 2025-07-27 06:55:16,581 | INFO     | aborting job monitoring since job object (job id=6745907823) has expired
[2025-07-27 02:55:46] 2025-07-27 06:55:16,581 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:55:46] 2025-07-27 06:55:16,581 | INFO     | will abort loop
[2025-07-27 02:55:46] 2025-07-27 06:55:17,108 | INFO     | [job] retrieve thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:17,126 | INFO     | [job] control thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:17,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 02:55:46] 2025-07-27 06:55:17,494 | INFO     | [data] control thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:17,548 | INFO     | all payload control threads have been joined
[2025-07-27 02:55:46] 2025-07-27 06:55:17,587 | INFO     | [job] job monitor thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:17,917 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:17,965 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:18,053 | INFO     | [job] validate thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:18,065 | INFO     | [payload] failed_post thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:18,095 | INFO     | [data] copytool_in thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:18,109 | INFO     | [data] copytool_out thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:18,253 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:18,553 | INFO     | [payload] control thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:18,587 | INFO     | [payload] validate_post thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:18,919 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:55:46] 2025-07-27 06:55:19,925 | INFO     | [job] queue monitor thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:21,212 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:26,506 | INFO     | job.realtimelogging is not enabled
[2025-07-27 02:55:46] 2025-07-27 06:55:27,512 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 02:55:46] 2025-07-27 06:55:28,983 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139894165972800)>', '<ExcThread(monitor, started 139893460170496)>']
[2025-07-27 02:55:46] 2025-07-27 06:55:34,009 | INFO     | all workflow threads have been joined
[2025-07-27 02:55:46] 2025-07-27 06:55:34,009 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 02:55:46] 2025-07-27 06:55:34,009 | INFO     | traces error code: 0
[2025-07-27 02:55:46] 2025-07-27 06:55:34,009 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 02:55:46] 2025-07-27 06:55:45,935 | INFO     | PID=1538693 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 02:55:46] 2025-07-27 06:55:45,935 | INFO     | .. there are 16 such processes running
[2025-07-27 02:55:46] 2025-07-27 06:55:45,936 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 02:55:46] 2025-07-27 06:55:45,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 02:55:46] 2025-07-27 06:55:45,936 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 02:55:46] 2025-07-27 06:55:45,936 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 02:55:46] 2025-07-27 06:55:45,936 | INFO     | [monitor] control thread has ended
[2025-07-27 02:55:46] 2025-07-27 06:55:46,018 [wrapper] ==== pilot stdout END ====
[2025-07-27 02:55:46] 2025-07-27 06:55:46,021 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 02:55:46] 2025-07-27 06:55:46,023 [wrapper] pilotpid: 1538693
[2025-07-27 02:55:46] 2025-07-27 06:55:46,025 [wrapper] Pilot exit status: 0
[2025-07-27 02:55:46] 2025-07-27 06:55:46,034 [wrapper] pandaids: 6745907823 6745907823
[2025-07-27 02:55:46] 2025-07-27 06:55:46,115 [wrapper] cleanup supervisor_pilot 1881843 1538698
[2025-07-27 02:55:46] 2025-07-27 06:55:46,117 [wrapper] Test setup, not cleaning
[2025-07-27 02:55:46] 2025-07-27 06:55:46,120 [wrapper] apfmon messages muted
[2025-07-27 02:55:46] 2025-07-27 06:55:46,122 [wrapper] ==== wrapper stdout END ====
[2025-07-27 02:55:46] 2025-07-27 06:55:46,124 [wrapper] ==== wrapper stderr END ====
[2025-07-27 02:55:46]  *** Error codes and diagnostics ***
[2025-07-27 02:55:46]     "exeErrorCode": 0,
[2025-07-27 02:55:46]     "exeErrorDiag": "",
[2025-07-27 02:55:46]     "pilotErrorCode": 0,
[2025-07-27 02:55:46]     "pilotErrorDiag": "",
[2025-07-27 02:55:46]  *** Listing of results directory ***
[2025-07-27 02:55:46] total 631908
[2025-07-27 02:55:46] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:58 pilot3.tar.gz
[2025-07-27 02:55:46] -rwx------. 1 boincer umatlas     36292 Jul 26 20:08 runpilot2-wrapper.sh
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:08 queuedata.json
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas       100 Jul 27 01:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 02:55:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 01:16 run_atlas
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas       105 Jul 27 01:16 job.xml
[2025-07-27 02:55:46] -rw-r--r--. 3 boincer umatlas 234085622 Jul 27 01:16 EVNT.45758448._000004.pool.root.1
[2025-07-27 02:55:46] -rw-r--r--. 3 boincer umatlas 234085622 Jul 27 01:16 ATLAS.root_0
[2025-07-27 02:55:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:16 start_atlas.sh
[2025-07-27 02:55:46] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 01:16 shared
[2025-07-27 02:55:46] -rw-r--r--. 2 boincer umatlas    542875 Jul 27 01:16 input.tar.gz
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas         0 Jul 27 01:16 boinc_lockfile
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas   1593052 Jul 27 01:16 agis_ddmendpoints.agis.ALL.json
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas      2552 Jul 27 01:46 pandaJob.out
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas    980109 Jul 27 01:46 agis_schedconf.cvmfs.json
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas 173619663 Jul 27 02:54 HITS.45758450._000084.pool.root.1
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas       530 Jul 27 02:54 boinc_task_state.xml
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas        96 Jul 27 02:54 pilot_heartbeat.json
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas      1024 Jul 27 02:55 memory_monitor_summary.json
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas    293189 Jul 27 02:55 log.45758450._000084.job.log.tgz.1
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas      7748 Jul 27 02:55 heartbeat.json
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas      7174 Jul 27 02:55 init_data.xml
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 02:55 boinc_mmap_file
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas       823 Jul 27 02:55 pilotlog.txt
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas        27 Jul 27 02:55 wrapper_checkpoint.txt
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas    407675 Jul 27 02:55 log.45758450._000084.job.log.1
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas       357 Jul 27 02:55 output.list
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas       620 Jul 27 02:55 runtime_log
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas    716800 Jul 27 02:55 result.tar.gz
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas      8745 Jul 27 02:55 runtime_log.err
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas       776 Jul 27 02:55 ghiLDmv73z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmBf1KDm1mXUrn.diag
[2025-07-27 02:55:46] -rw-r--r--. 1 boincer umatlas     24585 Jul 27 02:55 stderr.txt
[2025-07-27 02:55:46] HITS file was successfully produced:
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas 173619663 Jul 27 02:54 shared/HITS.pool.root.1
[2025-07-27 02:55:46]  *** Contents of shared directory: ***
[2025-07-27 02:55:46] total 399408
[2025-07-27 02:55:46] -rw-r--r--. 3 boincer umatlas 234085622 Jul 27 01:16 ATLAS.root_0
[2025-07-27 02:55:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:16 start_atlas.sh
[2025-07-27 02:55:46] -rw-r--r--. 2 boincer umatlas    542875 Jul 27 01:16 input.tar.gz
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas 173619663 Jul 27 02:54 HITS.pool.root.1
[2025-07-27 02:55:46] -rw-------. 1 boincer umatlas    716800 Jul 27 02:55 result.tar.gz
02:55:48 (1478901): run_atlas exited; CPU time 30869.973233
02:55:48 (1478901): called boinc_finish(0)

</stderr_txt>
]]>

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