Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:09:16 (268998): wrapper (7.7.26015): starting
01:09:16 (268998): wrapper: running run_atlas (--nthreads 10)
[2025-07-27 01:09:16] Arguments: --nthreads 10
[2025-07-27 01:09:16] Threads: 10
[2025-07-27 01:09:16] Checking for CVMFS
[2025-07-27 01:09:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 01:09:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 01:09:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 01:09:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 01:09:17] 2.13.1.0 129353 6260 121560 148800 2 65 13136134 39288832 3838 16776704 0 8441229 99.703 4098257 41554 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 01:09:17] CVMFS is ok
[2025-07-27 01:09:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 01:09:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 01:09:17] Further information can be found at the LHC@home message board.
[2025-07-27 01:09:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 01:09:17] Checking for apptainer binary...
[2025-07-27 01:09:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 01:09:17] Running /usr/bin/apptainer --version
[2025-07-27 01:09:17] apptainer version 1.4.1-1.el9
[2025-07-27 01:09:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 01:09:17] c-210-13.aglt2.org
[2025-07-27 01:09:17] apptainer works
[2025-07-27 01:09:17] Set ATHENA_PROC_NUMBER=10
[2025-07-27 01:09:17] Set ATHENA_CORE_NUMBER=10
[2025-07-27 01:09:17] Starting ATLAS job with PandaID=6745911785
[2025-07-27 01:09:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 02:50:39]  *** The last 200 lines of the pilot log: ***
[2025-07-27 02:50:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 02:50:39]  replicas=None
[2025-07-27 02:50:39]  scope=mc23_13p6TeV
[2025-07-27 02:50:39]  status=None
[2025-07-27 02:50:39]  status_code=0
[2025-07-27 02:50:39]  storage_token=
[2025-07-27 02:50:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745911785/log.45743349._045555.job.log.tgz.1
[2025-07-27 02:50:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/10/log.45743349._045555.job.log.tgz.1
[2025-07-27 02:50:39]  workdir=None
[2025-07-27 02:50:39] ]
[2025-07-27 02:50:39] 2025-07-27 06:49:58,726 | INFO     | transferring file log.45743349._045555.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745911785/log.45743349._045555.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 02:50:39] 2025-07-27 06:49:58,726 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745911785/log.45743349._045555.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._045555.job
[2025-07-27 02:50:39] 2025-07-27 06:49:58,745 | INFO     | adding to output.list: log.45743349._045555.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/10/log.45743349._045555.job.log.tg
[2025-07-27 02:50:39] 2025-07-27 06:49:58,746 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 02:50:39] 2025-07-27 06:49:58,746 | INFO     | summary of transferred files:
[2025-07-27 02:50:39] 2025-07-27 06:49:58,746 | INFO     |  -- lfn=log.45743349._045555.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 02:50:39] 2025-07-27 06:49:58,747 | INFO     | stage-out finished correctly
[2025-07-27 02:50:39] 2025-07-27 06:50:00,083 | INFO     | monitor loop #452: job 0:6745911785 is in state 'finished'
[2025-07-27 02:50:39] 2025-07-27 06:50:00,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 02:50:39] 2025-07-27 06:50:02,137 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 02:50:39] 2025-07-27 06:50:02,258 | INFO     | job 6745911785 has state=finished
[2025-07-27 02:50:39] 2025-07-27 06:50:02,258 | INFO     | preparing for final server update for job 6745911785 in state='finished'
[2025-07-27 02:50:39] 2025-07-27 06:50:02,259 | INFO     | this job has now completed (state=finished)
[2025-07-27 02:50:39] 2025-07-27 06:50:02,259 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 02:50:39] 2025-07-27 06:50:02,259 | INFO     | log transfer has been attempted: DONE
[2025-07-27 02:50:39] 2025-07-27 06:50:02,259 | INFO     | job 6745911785 has finished - writing final server update
[2025-07-27 02:50:39] 2025-07-27 06:50:02,260 | INFO     | total number of processed events: 400 (read)
[2025-07-27 02:50:39] 2025-07-27 06:50:02,261 | INFO     | executing command: lscpu
[2025-07-27 02:50:39] 2025-07-27 06:50:02,305 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 02:50:39] 2025-07-27 06:50:02,586 | INFO     | monitor loop #453: job 0:6745911785 is in state 'finished'
[2025-07-27 02:50:39] 2025-07-27 06:50:02,587 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 02:50:39] 2025-07-27 06:50:03,004 | INFO     | PID=272732 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 02:50:39] 2025-07-27 06:50:03,005 | INFO     | .. there are 6 such processes running
[2025-07-27 02:50:39] 2025-07-27 06:50:05,089 | INFO     | monitor loop #454: job 0:6745911785 is in state 'finished'
[2025-07-27 02:50:39] 2025-07-27 06:50:05,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 02:50:39] 2025-07-27 06:50:06,561 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 02:50:39] 2025-07-27 06:50:06,566 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8759250000007
[2025-07-27 02:50:39] 2025-07-27 06:50:06,572 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745911785/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 02:50:39] 2025-07-27 06:50:06,573 | INFO     | extracted standard info from prmon json
[2025-07-27 02:50:39] 2025-07-27 06:50:06,573 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 02:50:39] 2025-07-27 06:50:06,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 02:50:39] 2025-07-27 06:50:06,573 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 02:50:39] 2025-07-27 06:50:06,573 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 02:50:39] 2025-07-27 06:50:06,575 | INFO     | fitting pss+swap vs Time
[2025-07-27 02:50:39] 2025-07-27 06:50:06,575 | INFO     | sum of square deviations: 241429643.0
[2025-07-27 02:50:39] 2025-07-27 06:50:06,576 | INFO     | sum of deviations: 639967591.9999999
[2025-07-27 02:50:39] 2025-07-27 06:50:06,576 | INFO     | mean x: 1753596077.5
[2025-07-27 02:50:39] 2025-07-27 06:50:06,576 | INFO     | mean y: 2667639.3260869565
[2025-07-27 02:50:39] 2025-07-27 06:50:06,576 | INFO     | -- intersect: -4645662388.061313
[2025-07-27 02:50:39] 2025-07-27 06:50:06,576 | INFO     | intersect: -4645662388.061313
[2025-07-27 02:50:39] 2025-07-27 06:50:06,577 | INFO     | chi2: 0.014971761335308297
[2025-07-27 02:50:39] 2025-07-27 06:50:06,577 | INFO     | -- intersect: -4645662388.061313
[2025-07-27 02:50:39] 2025-07-27 06:50:06,577 | INFO     | current memory leak: 2.65 B/s (using 92 data points, chi2=0.01)
[2025-07-27 02:50:39] 2025-07-27 06:50:06,577 | INFO     | could have reported an average CPU frequency of 2599 MHz (7 samples)
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | ..............................
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | . Timing measurements:
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | . get job = 0 s
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | . initial setup = 2 s
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | . payload setup = 7 s
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | . stage-in = 0 s
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | . payload execution = 6001 s
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | . stage-out = 0 s
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | . log creation = 0 s
[2025-07-27 02:50:39] 2025-07-27 06:50:06,578 | INFO     | ..............................
[2025-07-27 02:50:39] 2025-07-27 06:50:06,666 | INFO     | 
[2025-07-27 02:50:39] 2025-07-27 06:50:06,667 | INFO     | job summary report
[2025-07-27 02:50:39] 2025-07-27 06:50:06,667 | INFO     | --------------------------------------------------
[2025-07-27 02:50:39] 2025-07-27 06:50:06,667 | INFO     | PanDA job id: 6745911785
[2025-07-27 02:50:39] 2025-07-27 06:50:06,667 | INFO     | task id: 45743349
[2025-07-27 02:50:39] 2025-07-27 06:50:06,667 | INFO     | errors: (none)
[2025-07-27 02:50:39] 2025-07-27 06:50:06,667 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 02:50:39] 2025-07-27 06:50:06,667 | INFO     | pilot state: finished 
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | transexitcode: 0
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | exeerrorcode: 0
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | exeerrordiag: 
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | exitcode: 0
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | exitmsg: OK
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | cpuconsumptiontime: 53750 s
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | nevents: 400
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | neventsw: 0
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | pid: 279337
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | pgrp: 279337
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | corecount: 10
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | event service: False
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | sizes: {0: 2397309, 1: 2397451, 5: 2397713, 11: 2397769, 6013: 2424470, 6014: 2433468, 6017: 2433652, 6021: 2433846}
[2025-07-27 02:50:39] 2025-07-27 06:50:06,668 | INFO     | --------------------------------------------------
[2025-07-27 02:50:39] 2025-07-27 06:50:06,669 | INFO     | 
[2025-07-27 02:50:39] 2025-07-27 06:50:06,669 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 02:50:39] 2025-07-27 06:50:06,689 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,690 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,690 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,690 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,690 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,691 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,691 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,691 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,691 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,691 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,691 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,691 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,691 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,692 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,692 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,692 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,692 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,692 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 02:50:39] 2025-07-27 06:50:06,692 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,692 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 02:50:39] 2025-07-27 06:50:06,692 | INFO     | job 6745911785 has completed (purged errors)
[2025-07-27 02:50:39] 2025-07-27 06:50:06,692 | INFO     | overall cleanup function is called
[2025-07-27 02:50:39] 2025-07-27 06:50:07,700 | INFO     | --- collectZombieJob: --- 10, [279337]
[2025-07-27 02:50:39] 2025-07-27 06:50:07,700 | INFO     | zombie collector waiting for pid 279337
[2025-07-27 02:50:39] 2025-07-27 06:50:07,700 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 02:50:39] 2025-07-27 06:50:07,701 | INFO     | collected zombie processes
[2025-07-27 02:50:39] 2025-07-27 06:50:07,701 | INFO     | will attempt to kill all subprocesses of pid=279337
[2025-07-27 02:50:39] 2025-07-27 06:50:07,896 | INFO     | process IDs to be killed: [279337] (in reverse order)
[2025-07-27 02:50:39] 2025-07-27 06:50:07,959 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 02:50:39] 2025-07-27 06:50:07,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 02:50:39] 2025-07-27 06:50:07,968 | INFO     | did not find any defunct processes belonging to 279337
[2025-07-27 02:50:39] 2025-07-27 06:50:07,976 | INFO     | did not find any defunct processes belonging to 279337
[2025-07-27 02:50:39] 2025-07-27 06:50:07,976 | INFO     | ready for new job
[2025-07-27 02:50:39] 2025-07-27 06:50:07,977 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 02:50:39] 2025-07-27 06:50:07,979 | INFO     | ***************************************
[2025-07-27 02:50:39] 2025-07-27 06:50:07,979 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 02:50:39] 2025-07-27 06:50:07,979 | INFO     | ***************************************
[2025-07-27 02:50:39] 2025-07-27 06:50:07,979 | INFO     | 
[2025-07-27 02:50:39] 2025-07-27 06:50:07,981 | INFO     | architecture information:
[2025-07-27 02:50:39] 2025-07-27 06:50:07,982 | INFO     | executing command: cat /etc/os-release
[2025-07-27 02:50:39] 2025-07-27 06:50:07,996 | INFO     | cat /etc/os-release:
[2025-07-27 02:50:39] NAME="CentOS Linux"
[2025-07-27 02:50:39] VERSION="7 (Core)"
[2025-07-27 02:50:39] ID="centos"
[2025-07-27 02:50:39] ID_LIKE="rhel fedora"
[2025-07-27 02:50:39] VERSION_ID="7"
[2025-07-27 02:50:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 02:50:39] ANSI_COLOR="0;31"
[2025-07-27 02:50:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 02:50:39] HOME_URL="https://www.centos.org/"
[2025-07-27 02:50:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 02:50:39] 
[2025-07-27 02:50:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 02:50:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 02:50:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 02:50:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 02:50:39] 
[2025-07-27 02:50:39] 2025-07-27 06:50:07,997 | INFO     | ***************************************
[2025-07-27 02:50:39] 2025-07-27 06:50:08,499 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 02:50:39] 2025-07-27 06:50:08,516 | INFO     | sufficient remaining disk space (53991178240 B)
[2025-07-27 02:50:39] 2025-07-27 06:50:08,516 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 02:50:39] 2025-07-27 06:50:08,516 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 02:50:39] 2025-07-27 06:50:08,516 | INFO     | update_server=False
[2025-07-27 02:50:39] 2025-07-27 06:50:08,516 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 02:50:39] 2025-07-27 06:50:08,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:50:39] 2025-07-27 06:50:08,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 02:50:39] 2025-07-27 06:50:08,571 | INFO     | all payload control threads have been joined
[2025-07-27 02:50:39] 2025-07-27 06:50:08,597 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:50:39] 2025-07-27 06:50:08,597 | INFO     | aborting loop
[2025-07-27 02:50:39] 2025-07-27 06:50:08,680 | INFO     | all job control threads have been joined
[2025-07-27 02:50:39] 2025-07-27 06:50:08,773 | INFO     | all data control threads have been joined
[2025-07-27 02:50:39] 2025-07-27 06:50:09,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 02:50:39] 2025-07-27 06:50:09,522 | INFO     | [job] retrieve thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:09,522 | INFO     | [job] queue monitor thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:09,576 | INFO     | [payload] control thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:09,602 | INFO     | [job] job monitor thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:09,685 | INFO     | [job] control thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:09,778 | INFO     | [data] control thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:09,984 | INFO     | [job] validate thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:10,105 | INFO     | [payload] validate_post thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:10,157 | INFO     | [payload] failed_post thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:10,256 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:10,325 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:10,470 | INFO     | [data] copytool_in thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:10,838 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:11,349 | INFO     | [data] copytool_out thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:12,523 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:18,699 | INFO     | job.realtimelogging is not enabled
[2025-07-27 02:50:39] 2025-07-27 06:50:19,704 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 02:50:39] 2025-07-27 06:50:19,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741927925568)>', '<ExcThread(monitor, started 139741425022720)>']
[2025-07-27 02:50:39] 2025-07-27 06:50:24,857 | INFO     | all workflow threads have been joined
[2025-07-27 02:50:39] 2025-07-27 06:50:24,857 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 02:50:39] 2025-07-27 06:50:24,858 | INFO     | traces error code: 0
[2025-07-27 02:50:39] 2025-07-27 06:50:24,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 02:50:39] 2025-07-27 06:50:39,324 | INFO     | PID=272732 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 02:50:39] 2025-07-27 06:50:39,325 | INFO     | .. there are 6 such processes running
[2025-07-27 02:50:39] 2025-07-27 06:50:39,325 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 02:50:39] 2025-07-27 06:50:39,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 02:50:39] 2025-07-27 06:50:39,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 02:50:39] 2025-07-27 06:50:39,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 02:50:39] 2025-07-27 06:50:39,325 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 02:50:39] 2025-07-27 06:50:39,325 | INFO     | [monitor] control thread has ended
[2025-07-27 02:50:39] 2025-07-27 06:50:39,493 [wrapper] ==== pilot stdout END ====
[2025-07-27 02:50:39] 2025-07-27 06:50:39,497 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 02:50:39] 2025-07-27 06:50:39,500 [wrapper] pilotpid: 272732
[2025-07-27 02:50:39] 2025-07-27 06:50:39,503 [wrapper] Pilot exit status: 0
[2025-07-27 02:50:39] 2025-07-27 06:50:39,515 [wrapper] pandaids: 6745911785
[2025-07-27 02:50:39] 2025-07-27 06:50:39,556 [wrapper] cleanup supervisor_pilot  391705 272733
[2025-07-27 02:50:39] 2025-07-27 06:50:39,560 [wrapper] Test setup, not cleaning
[2025-07-27 02:50:39] 2025-07-27 06:50:39,564 [wrapper] apfmon messages muted
[2025-07-27 02:50:39] 2025-07-27 06:50:39,569 [wrapper] ==== wrapper stdout END ====
[2025-07-27 02:50:39] 2025-07-27 06:50:39,572 [wrapper] ==== wrapper stderr END ====
[2025-07-27 02:50:39]  *** Error codes and diagnostics ***
[2025-07-27 02:50:39]     "exeErrorCode": 0,
[2025-07-27 02:50:39]     "exeErrorDiag": "",
[2025-07-27 02:50:39]     "pilotErrorCode": 0,
[2025-07-27 02:50:39]     "pilotErrorDiag": "",
[2025-07-27 02:50:39]  *** Listing of results directory ***
[2025-07-27 02:50:39] total 357160
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:58 pilot3.tar.gz
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:11 queuedata.json
[2025-07-27 02:50:39] -rwx------. 1 boincer umatlas     36292 Jul 26 20:12 runpilot2-wrapper.sh
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas       100 Jul 27 01:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 02:50:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 01:09 run_atlas
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas       105 Jul 27 01:09 job.xml
[2025-07-27 02:50:39] -rw-r--r--. 2 boincer umatlas 146390411 Jul 27 01:09 EVNT.45743347._000925.pool.root.1
[2025-07-27 02:50:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:09 start_atlas.sh
[2025-07-27 02:50:39] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 01:09 shared
[2025-07-27 02:50:39] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 01:09 input.tar.gz
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas         0 Jul 27 01:09 boinc_lockfile
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 01:09 pandaJob.out
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas    980125 Jul 27 01:09 agis_schedconf.cvmfs.json
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas   1593052 Jul 27 01:09 agis_ddmendpoints.agis.ALL.json
[2025-07-27 02:50:39] drwx------. 4 boincer umatlas      4096 Jul 27 01:09 pilot3
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas      6658 Jul 27 02:45 init_data.xml
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas 213616573 Jul 27 02:49 HITS.45743349._045555.pool.root.1
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas       530 Jul 27 02:49 boinc_task_state.xml
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas      1037 Jul 27 02:49 memory_monitor_summary.json
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas    340191 Jul 27 02:49 log.45743349._045555.job.log.tgz.1
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas        95 Jul 27 02:50 pilot_heartbeat.json
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas      7813 Jul 27 02:50 heartbeat.json
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas        27 Jul 27 02:50 wrapper_checkpoint.txt
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 02:50 boinc_mmap_file
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas       891 Jul 27 02:50 pilotlog.txt
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas    587134 Jul 27 02:50 log.45743349._045555.job.log.1
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas       357 Jul 27 02:50 output.list
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas       620 Jul 27 02:50 runtime_log
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas    942080 Jul 27 02:50 result.tar.gz
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 02:50 runtime_log.err
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas       653 Jul 27 02:50 HNyKDmwA4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkbTLDmuQiASo.diag
[2025-07-27 02:50:39] -rw-r--r--. 1 boincer umatlas     21939 Jul 27 02:50 stderr.txt
[2025-07-27 02:50:39] HITS file was successfully produced:
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas 213616573 Jul 27 02:49 shared/HITS.pool.root.1
[2025-07-27 02:50:39]  *** Contents of shared directory: ***
[2025-07-27 02:50:39] total 353044
[2025-07-27 02:50:39] -rw-r--r--. 2 boincer umatlas 146390411 Jul 27 01:09 ATLAS.root_0
[2025-07-27 02:50:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:09 start_atlas.sh
[2025-07-27 02:50:39] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 01:09 input.tar.gz
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas 213616573 Jul 27 02:49 HITS.pool.root.1
[2025-07-27 02:50:39] -rw-------. 1 boincer umatlas    942080 Jul 27 02:50 result.tar.gz
02:50:40 (268998): run_atlas exited; CPU time 53855.852578
02:50:40 (268998): called boinc_finish(0)

</stderr_txt>
]]>

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