Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
06:33:08 (3303131): wrapper (7.7.26015): starting
06:33:08 (3303131): wrapper: running run_atlas (--nthreads 12)
[2025-07-29 06:33:08] Arguments: --nthreads 12
[2025-07-29 06:33:08] Threads: 12
[2025-07-29 06:33:08] Checking for CVMFS
[2025-07-29 06:33:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 06:33:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 06:33:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 06:33:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 06:33:08] 2.13.1.0 3274237 87 43052 148884 0 57 3914426 6144001 0 130560 0 68439 99.974 5351 978 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-29 06:33:08] CVMFS is ok
[2025-07-29 06:33:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 06:33:08] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-29 06:33:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-29 06:33:08] Further information can be found at the LHC@home message board.
[2025-07-29 06:33:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 06:33:08] Checking for apptainer binary...
[2025-07-29 06:33:08] apptainer is not installed, using version from CVMFS
[2025-07-29 06:33:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 06:33:08] ace
[2025-07-29 06:33:08] apptainer works
[2025-07-29 06:33:08] Set ATHENA_PROC_NUMBER=12
[2025-07-29 06:33:08] Set ATHENA_CORE_NUMBER=12
[2025-07-29 06:33:08] Starting ATLAS job with PandaID=6745907854
[2025-07-29 06:33:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 08:12:16]  *** The last 200 lines of the pilot log: ***
[2025-07-29 08:12:16]  mtime=0
[2025-07-29 08:12:16]  protocol_id=None
[2025-07-29 08:12:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-29 08:12:16]  replicas=None
[2025-07-29 08:12:16]  scope=mc23_13p6TeV
[2025-07-29 08:12:16]  status=None
[2025-07-29 08:12:16]  status_code=0
[2025-07-29 08:12:16]  storage_token=
[2025-07-29 08:12:16]  surl=/var/lib/boinc-client/slots/14/PanDA_Pilot-6745907854/log.45758450._000115.job.log.tgz.1
[2025-07-29 08:12:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/9e/log.45758450._000115.job.log.tgz.1
[2025-07-29 08:12:16]  workdir=None
[2025-07-29 08:12:16] ]
[2025-07-29 08:12:16] 2025-07-29 13:11:32,981 | INFO     | transferring file log.45758450._000115.job.log.tgz.1 from /var/lib/boinc-client/slots/14/PanDA_Pilot-6745907854/log.45758450._000115.job.log.tgz.1 to /var/lib/boin
[2025-07-29 08:12:16] 2025-07-29 13:11:32,981 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/14/PanDA_Pilot-6745907854/log.45758450._000115.job.log.tgz.1 /var/lib/boinc-client/slots/14/log.4575
[2025-07-29 08:12:16] 2025-07-29 13:11:32,996 | INFO     | adding to output.list: log.45758450._000115.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/9e/log.45758450._000115.job.log.tg
[2025-07-29 08:12:16] 2025-07-29 13:11:32,997 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-29 08:12:16] 2025-07-29 13:11:32,997 | INFO     | summary of transferred files:
[2025-07-29 08:12:16] 2025-07-29 13:11:32,997 | INFO     |  -- lfn=log.45758450._000115.job.log.tgz.1, status_code=0, status=transferred
[2025-07-29 08:12:16] 2025-07-29 13:11:32,997 | INFO     | stage-out finished correctly
[2025-07-29 08:12:16] 2025-07-29 13:11:36,538 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-29 08:12:16] 2025-07-29 13:11:36,668 | INFO     | job 6745907854 has state=finished
[2025-07-29 08:12:16] 2025-07-29 13:11:36,668 | INFO     | preparing for final server update for job 6745907854 in state='finished'
[2025-07-29 08:12:16] 2025-07-29 13:11:36,668 | INFO     | this job has now completed (state=finished)
[2025-07-29 08:12:16] 2025-07-29 13:11:36,669 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-29 08:12:16] 2025-07-29 13:11:36,669 | INFO     | log transfer has been attempted: DONE
[2025-07-29 08:12:16] 2025-07-29 13:11:36,669 | INFO     | job 6745907854 has finished - writing final server update
[2025-07-29 08:12:16] 2025-07-29 13:11:36,669 | INFO     | total number of processed events: 400 (read)
[2025-07-29 08:12:16] 2025-07-29 13:11:36,670 | INFO     | executing command: lscpu
[2025-07-29 08:12:16] 2025-07-29 13:11:36,687 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-29 08:12:16] 2025-07-29 13:11:39,401 | WARNING  | process 3313426 can no longer be monitored (due to stat problems) - aborting
[2025-07-29 08:12:16] 2025-07-29 13:11:39,401 | INFO     | using path: /var/lib/boinc-client/slots/14/PanDA_Pilot-6745907854/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 08:12:16] 2025-07-29 13:11:39,485 | INFO     | number of running child processes to parent process 3313426: 1
[2025-07-29 08:12:16] 2025-07-29 13:11:39,485 | INFO     | maximum number of monitored processes: 6
[2025-07-29 08:12:16] 2025-07-29 13:11:40,387 | INFO     | PID=3306839 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-29 08:12:16] 2025-07-29 13:11:41,986 | INFO     | monitor loop #439: job 0:6745907854 is in state 'finished'
[2025-07-29 08:12:16] 2025-07-29 13:11:41,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 08:12:16] 2025-07-29 13:11:43,464 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-29 08:12:16] 2025-07-29 13:11:43,466 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 2710.034625
[2025-07-29 08:12:16] 2025-07-29 13:11:43,469 | INFO     | using path: /var/lib/boinc-client/slots/14/PanDA_Pilot-6745907854/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 08:12:16] 2025-07-29 13:11:43,469 | INFO     | extracted standard info from prmon json
[2025-07-29 08:12:16] 2025-07-29 13:11:43,469 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 08:12:16] 2025-07-29 13:11:43,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 08:12:16] 2025-07-29 13:11:43,469 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 08:12:16] 2025-07-29 13:11:43,469 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 08:12:16] 2025-07-29 13:11:43,471 | INFO     | fitting pss+swap vs Time
[2025-07-29 08:12:16] 2025-07-29 13:11:43,471 | INFO     | sum of square deviations: 226022842.5
[2025-07-29 08:12:16] 2025-07-29 13:11:43,471 | INFO     | sum of deviations: 3231961200.5
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | mean x: 1753791837.5
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | mean y: 2739693.566666667
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | -- intersect: -25075199818.470047
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | intersect: -25075199818.470047
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | chi2: 0.0025781899623158696
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | -- intersect: -25075199818.470047
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | current memory leak: 14.30 B/s (using 90 data points, chi2=0.00)
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | could have reported an average CPU frequency of 2518 MHz (7 samples)
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | ..............................
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | . Timing measurements:
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | . get job = 0 s
[2025-07-29 08:12:16] 2025-07-29 13:11:43,472 | INFO     | . initial setup = 3 s
[2025-07-29 08:12:16] 2025-07-29 13:11:43,473 | INFO     | . payload setup = 4 s
[2025-07-29 08:12:16] 2025-07-29 13:11:43,473 | INFO     | . stage-in = 0 s
[2025-07-29 08:12:16] 2025-07-29 13:11:43,473 | INFO     | . payload execution = 5874 s
[2025-07-29 08:12:16] 2025-07-29 13:11:43,473 | INFO     | . stage-out = 0 s
[2025-07-29 08:12:16] 2025-07-29 13:11:43,473 | INFO     | . log creation = 0 s
[2025-07-29 08:12:16] 2025-07-29 13:11:43,473 | INFO     | ..............................
[2025-07-29 08:12:16] 2025-07-29 13:11:43,726 | INFO     | 
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | job summary report
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | --------------------------------------------------
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | PanDA job id: 6745907854
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | task id: 45758450
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | errors: (none)
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | pilot state: finished 
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | transexitcode: 0
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | exeerrorcode: 0
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | exeerrordiag: 
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | exitcode: 0
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | exitmsg: OK
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | cpuconsumptiontime: 66940 s
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | nevents: 400
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | neventsw: 0
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | pid: 3313426
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | pgrp: 3313426
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | corecount: 12
[2025-07-29 08:12:16] 2025-07-29 13:11:43,727 | INFO     | event service: False
[2025-07-29 08:12:16] 2025-07-29 13:11:43,728 | INFO     | sizes: {0: 2391904, 3: 2392166, 11: 2392194, 5882: 2428017, 5886: 2428017, 5893: 2428211}
[2025-07-29 08:12:16] 2025-07-29 13:11:43,728 | INFO     | --------------------------------------------------
[2025-07-29 08:12:16] 2025-07-29 13:11:43,728 | INFO     | 
[2025-07-29 08:12:16] 2025-07-29 13:11:43,728 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/14
[2025-07-29 08:12:16] 2025-07-29 13:11:43,742 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,742 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,742 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | job 6745907854 has completed (purged errors)
[2025-07-29 08:12:16] 2025-07-29 13:11:43,743 | INFO     | overall cleanup function is called
[2025-07-29 08:12:16] 2025-07-29 13:11:44,750 | INFO     | --- collectZombieJob: --- 10, [3313426]
[2025-07-29 08:12:16] 2025-07-29 13:11:44,750 | INFO     | zombie collector waiting for pid 3313426
[2025-07-29 08:12:16] 2025-07-29 13:11:44,751 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 08:12:16] 2025-07-29 13:11:44,751 | INFO     | collected zombie processes
[2025-07-29 08:12:16] 2025-07-29 13:11:44,751 | INFO     | will attempt to kill all subprocesses of pid=3313426
[2025-07-29 08:12:16] 2025-07-29 13:11:44,831 | INFO     | process IDs to be killed: [3313426] (in reverse order)
[2025-07-29 08:12:16] 2025-07-29 13:11:44,869 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 08:12:16] 2025-07-29 13:11:44,869 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 08:12:16] 2025-07-29 13:11:44,872 | INFO     | did not find any defunct processes belonging to 3313426
[2025-07-29 08:12:16] 2025-07-29 13:11:44,875 | INFO     | did not find any defunct processes belonging to 3313426
[2025-07-29 08:12:16] 2025-07-29 13:11:44,875 | INFO     | ready for new job
[2025-07-29 08:12:16] 2025-07-29 13:11:44,875 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 08:12:16] 2025-07-29 13:11:44,876 | INFO     | ***************************************
[2025-07-29 08:12:16] 2025-07-29 13:11:44,876 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 08:12:16] 2025-07-29 13:11:44,876 | INFO     | ***************************************
[2025-07-29 08:12:16] 2025-07-29 13:11:44,876 | INFO     | 
[2025-07-29 08:12:16] 2025-07-29 13:11:44,877 | INFO     | architecture information:
[2025-07-29 08:12:16] 2025-07-29 13:11:44,877 | INFO     | executing command: cat /etc/os-release
[2025-07-29 08:12:16] 2025-07-29 13:11:44,889 | INFO     | cat /etc/os-release:
[2025-07-29 08:12:16] NAME="CentOS Linux"
[2025-07-29 08:12:16] VERSION="7 (Core)"
[2025-07-29 08:12:16] ID="centos"
[2025-07-29 08:12:16] ID_LIKE="rhel fedora"
[2025-07-29 08:12:16] VERSION_ID="7"
[2025-07-29 08:12:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 08:12:16] ANSI_COLOR="0;31"
[2025-07-29 08:12:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 08:12:16] HOME_URL="https://www.centos.org/"
[2025-07-29 08:12:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 08:12:16] 
[2025-07-29 08:12:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 08:12:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 08:12:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 08:12:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 08:12:16] 
[2025-07-29 08:12:16] 2025-07-29 13:11:44,889 | INFO     | ***************************************
[2025-07-29 08:12:16] 2025-07-29 13:11:45,392 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/14
[2025-07-29 08:12:16] 2025-07-29 13:11:45,403 | INFO     | sufficient remaining disk space (23819452416 B)
[2025-07-29 08:12:16] 2025-07-29 13:11:45,403 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 08:12:16] 2025-07-29 13:11:45,404 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 08:12:16] 2025-07-29 13:11:45,404 | INFO     | update_server=False
[2025-07-29 08:12:16] 2025-07-29 13:11:45,404 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 08:12:16] 2025-07-29 13:11:45,404 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 08:12:16] 2025-07-29 13:11:45,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 08:12:16] 2025-07-29 13:11:45,495 | INFO     | aborting loop
[2025-07-29 08:12:16] 2025-07-29 13:11:46,073 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 08:12:16] 2025-07-29 13:11:46,128 | INFO     | all payload control threads have been joined
[2025-07-29 08:12:16] 2025-07-29 13:11:46,341 | INFO     | all job control threads have been joined
[2025-07-29 08:12:16] 2025-07-29 13:11:46,348 | INFO     | all data control threads have been joined
[2025-07-29 08:12:16] 2025-07-29 13:11:46,406 | INFO     | [job] queue monitor thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:46,409 | INFO     | [job] retrieve thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:46,500 | INFO     | [job] job monitor thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:46,630 | INFO     | [job] validate thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:46,845 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:46,979 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:47,014 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:47,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 08:12:16] 2025-07-29 13:11:47,111 | INFO     | [payload] failed_post thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:47,130 | INFO     | [payload] control thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:47,347 | INFO     | [job] control thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:47,354 | INFO     | [data] control thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:47,858 | INFO     | [data] copytool_in thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:47,991 | INFO     | [payload] validate_post thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:48,074 | INFO     | [data] copytool_out thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:51,103 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:56,319 | INFO     | job.realtimelogging is not enabled
[2025-07-29 08:12:16] 2025-07-29 13:11:57,322 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 08:12:16] 2025-07-29 13:11:57,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140005710079808)>', '<ExcThread(monitor, started 140004189796096)>']
[2025-07-29 08:12:16] 2025-07-29 13:12:02,494 | INFO     | all workflow threads have been joined
[2025-07-29 08:12:16] 2025-07-29 13:12:02,495 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 08:12:16] 2025-07-29 13:12:02,495 | INFO     | traces error code: 0
[2025-07-29 08:12:16] 2025-07-29 13:12:02,495 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 08:12:16] 2025-07-29 13:12:16,568 | INFO     | PID=3306839 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-29 08:12:16] 2025-07-29 13:12:16,569 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 08:12:16] 2025-07-29 13:12:16,569 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 08:12:16] 2025-07-29 13:12:16,569 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 08:12:16] 2025-07-29 13:12:16,569 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 08:12:16] 2025-07-29 13:12:16,569 | CRITICAL | thread 'MainThread' is not alive
[2025-07-29 08:12:16] 2025-07-29 13:12:16,569 | INFO     | [monitor] control thread has ended
[2025-07-29 08:12:16] 2025-07-29 13:12:16,652 [wrapper] ==== pilot stdout END ====
[2025-07-29 08:12:16] 2025-07-29 13:12:16,654 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 08:12:16] 2025-07-29 13:12:16,656 [wrapper] pilotpid: 3306839
[2025-07-29 08:12:16] 2025-07-29 13:12:16,657 [wrapper] Pilot exit status: 0
[2025-07-29 08:12:16] 2025-07-29 13:12:16,665 [wrapper] pandaids: 6745907854
[2025-07-29 08:12:16] 2025-07-29 13:12:16,686 [wrapper] cleanup supervisor_pilot 3329148 3306840
[2025-07-29 08:12:16] 2025-07-29 13:12:16,688 [wrapper] Test setup, not cleaning
[2025-07-29 08:12:16] 2025-07-29 13:12:16,689 [wrapper] apfmon messages muted
[2025-07-29 08:12:16] 2025-07-29 13:12:16,691 [wrapper] ==== wrapper stdout END ====
[2025-07-29 08:12:16] 2025-07-29 13:12:16,693 [wrapper] ==== wrapper stderr END ====
[2025-07-29 08:12:16]  *** Error codes and diagnostics ***
[2025-07-29 08:12:16]     "exeErrorCode": 0,
[2025-07-29 08:12:16]     "exeErrorDiag": "",
[2025-07-29 08:12:16]     "pilotErrorCode": 0,
[2025-07-29 08:12:16]     "pilotErrorDiag": "",
[2025-07-29 08:12:16]  *** Listing of results directory ***
[2025-07-29 08:12:16] total 405760
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc    530466 Jul 26 18:58 pilot3.tar.gz
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc      5112 Jul 26 19:11 queuedata.json
[2025-07-29 08:12:16] -rwx------ 1 boinc boinc     36292 Jul 26 19:11 runpilot2-wrapper.sh
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc       100 Jul 29 06:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 08:12:16] -rwxr-xr-x 1 boinc boinc      7986 Jul 29 06:33 run_atlas
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc       105 Jul 29 06:33 job.xml
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc      6789 Jul 29 06:33 init_data.xml
[2025-07-29 08:12:16] -rw-r--r-- 2 boinc boinc 234979121 Jul 29 06:33 EVNT.45758448._000005.pool.root.1
[2025-07-29 08:12:16] -rw-r--r-- 2 boinc boinc     15095 Jul 29 06:33 start_atlas.sh
[2025-07-29 08:12:16] drwxrwx--x 2 boinc boinc      4096 Jul 29 06:33 shared
[2025-07-29 08:12:16] -rw-r--r-- 2 boinc boinc    542887 Jul 29 06:33 input.tar.gz
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc         0 Jul 29 06:33 boinc_lockfile
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc      2553 Jul 29 06:33 pandaJob.out
[2025-07-29 08:12:16] -rw------- 1 boinc boinc    977316 Jul 29 06:33 agis_schedconf.cvmfs.json
[2025-07-29 08:12:16] -rw------- 1 boinc boinc   1589827 Jul 29 06:33 agis_ddmendpoints.agis.ALL.json
[2025-07-29 08:12:16] drwx------ 4 boinc boinc      4096 Jul 29 06:33 pilot3
[2025-07-29 08:12:16] -rw------- 1 boinc boinc 174763974 Jul 29 08:11 HITS.45758450._000115.pool.root.1
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc       529 Jul 29 08:11 boinc_task_state.xml
[2025-07-29 08:12:16] -rw------- 1 boinc boinc        95 Jul 29 08:11 pilot_heartbeat.json
[2025-07-29 08:12:16] -rw------- 1 boinc boinc      1032 Jul 29 08:11 memory_monitor_summary.json
[2025-07-29 08:12:16] -rw------- 1 boinc boinc    379636 Jul 29 08:11 log.45758450._000115.job.log.tgz.1
[2025-07-29 08:12:16] -rw------- 1 boinc boinc      7766 Jul 29 08:11 heartbeat.json
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc      8192 Jul 29 08:12 boinc_mmap_file
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc        27 Jul 29 08:12 wrapper_checkpoint.txt
[2025-07-29 08:12:16] -rw------- 1 boinc boinc       817 Jul 29 08:12 pilotlog.txt
[2025-07-29 08:12:16] -rw------- 1 boinc boinc    561705 Jul 29 08:12 log.45758450._000115.job.log.1
[2025-07-29 08:12:16] -rw------- 1 boinc boinc       357 Jul 29 08:12 output.list
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc       620 Jul 29 08:12 runtime_log
[2025-07-29 08:12:16] -rw------- 1 boinc boinc    962560 Jul 29 08:12 result.tar.gz
[2025-07-29 08:12:16] -rw------- 1 boinc boinc       643 Jul 29 08:12 ZHGNDmx93z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIf1KDmC799Eo.diag
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc      8711 Jul 29 08:12 runtime_log.err
[2025-07-29 08:12:16] -rw-r--r-- 1 boinc boinc     21905 Jul 29 08:12 stderr.txt
[2025-07-29 08:12:16] HITS file was successfully produced:
[2025-07-29 08:12:16] -rw------- 1 boinc boinc 174763974 Jul 29 08:11 shared/HITS.pool.root.1
[2025-07-29 08:12:16]  *** Contents of shared directory: ***
[2025-07-29 08:12:16] total 401636
[2025-07-29 08:12:16] -rw-r--r-- 2 boinc boinc 234979121 Jul 29 06:33 ATLAS.root_0
[2025-07-29 08:12:16] -rw-r--r-- 2 boinc boinc     15095 Jul 29 06:33 start_atlas.sh
[2025-07-29 08:12:16] -rw-r--r-- 2 boinc boinc    542887 Jul 29 06:33 input.tar.gz
[2025-07-29 08:12:16] -rw------- 1 boinc boinc 174763974 Jul 29 08:11 HITS.pool.root.1
[2025-07-29 08:12:16] -rw------- 1 boinc boinc    962560 Jul 29 08:12 result.tar.gz
08:12:18 (3303131): run_atlas exited; CPU time 67018.928338
08:12:18 (3303131): called boinc_finish(0)

</stderr_txt>
]]>

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