Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:27:44 (49621): wrapper (7.7.26015): starting
02:27:44 (49621): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 02:27:44] Arguments: --nthreads 12
[2025-07-27 02:27:44] Threads: 12
[2025-07-27 02:27:44] Checking for CVMFS
[2025-07-27 02:27:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 02:27:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 02:27:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 02:27:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 02:27:44] 2.12.6.0 1267368 18000 334540 148803 1 67 19258471 32935937 9614 16776704 0 33629486 99.697 64350236 29457 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 02:27:44] CVMFS is ok
[2025-07-27 02:27:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 02:27:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 02:27:44] Further information can be found at the LHC@home message board.
[2025-07-27 02:27:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 02:27:44] Checking for apptainer binary...
[2025-07-27 02:27:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 02:27:44] Running /usr/bin/apptainer --version
[2025-07-27 02:27:44] apptainer version 1.4.1-1.el9
[2025-07-27 02:27:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 02:27:45] c6-2-29-3.aglt2.org
[2025-07-27 02:27:45] apptainer works
[2025-07-27 02:27:45] Set ATHENA_PROC_NUMBER=12
[2025-07-27 02:27:45] Set ATHENA_CORE_NUMBER=12
[2025-07-27 02:27:45] Starting ATLAS job with PandaID=6745892563
[2025-07-27 02:27:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 04:08:21]  *** The last 200 lines of the pilot log: ***
[2025-07-27 04:08:21]  lfn=log.45758466._000028.job.log.tgz.1
[2025-07-27 04:08:21]  mtime=0
[2025-07-27 04:08:21]  protocol_id=None
[2025-07-27 04:08:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 04:08:21]  replicas=None
[2025-07-27 04:08:21]  scope=mc23_13p6TeV
[2025-07-27 04:08:21]  status=None
[2025-07-27 04:08:21]  status_code=0
[2025-07-27 04:08:21]  storage_token=
[2025-07-27 04:08:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745892563/log.45758466._000028.job.log.tgz.1
[2025-07-27 04:08:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dc/86/log.45758466._000028.job.log.tgz.1
[2025-07-27 04:08:21]  workdir=None
[2025-07-27 04:08:21] ]
[2025-07-27 04:08:21] 2025-07-27 08:07:40,858 | INFO     | transferring file log.45758466._000028.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745892563/log.45758466._000028.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 04:08:21] 2025-07-27 08:07:40,858 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745892563/log.45758466._000028.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758466._000028.job
[2025-07-27 04:08:21] 2025-07-27 08:07:40,878 | INFO     | adding to output.list: log.45758466._000028.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dc/86/log.45758466._000028.job.log.tg
[2025-07-27 04:08:21] 2025-07-27 08:07:40,879 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 04:08:21] 2025-07-27 08:07:40,879 | INFO     | summary of transferred files:
[2025-07-27 04:08:21] 2025-07-27 08:07:40,880 | INFO     |  -- lfn=log.45758466._000028.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 04:08:21] 2025-07-27 08:07:40,880 | INFO     | stage-out finished correctly
[2025-07-27 04:08:21] 2025-07-27 08:07:41,611 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 04:08:21] 2025-07-27 08:07:43,423 | INFO     | job 6745892563 has state=finished
[2025-07-27 04:08:21] 2025-07-27 08:07:43,424 | INFO     | preparing for final server update for job 6745892563 in state='finished'
[2025-07-27 04:08:21] 2025-07-27 08:07:43,424 | INFO     | this job has now completed (state=finished)
[2025-07-27 04:08:21] 2025-07-27 08:07:43,425 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 04:08:21] 2025-07-27 08:07:43,425 | INFO     | log transfer has been attempted: DONE
[2025-07-27 04:08:21] 2025-07-27 08:07:43,425 | INFO     | job 6745892563 has finished - writing final server update
[2025-07-27 04:08:21] 2025-07-27 08:07:43,425 | INFO     | total number of processed events: 400 (read)
[2025-07-27 04:08:21] 2025-07-27 08:07:43,427 | INFO     | executing command: lscpu
[2025-07-27 04:08:21] 2025-07-27 08:07:43,482 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 04:08:21] 2025-07-27 08:07:43,691 | WARNING  | process 61028 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 04:08:21] 2025-07-27 08:07:43,691 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745892563/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:08:21] 2025-07-27 08:07:43,957 | INFO     | number of running child processes to parent process 61028: 1
[2025-07-27 04:08:21] 2025-07-27 08:07:43,957 | INFO     | maximum number of monitored processes: 6
[2025-07-27 04:08:21] 2025-07-27 08:07:46,460 | INFO     | monitor loop #430: job 0:6745892563 is in state 'finished'
[2025-07-27 04:08:21] 2025-07-27 08:07:46,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 04:08:21] 2025-07-27 08:07:48,196 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 04:08:21] 2025-07-27 08:07:48,200 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2680.4576964285707
[2025-07-27 04:08:21] 2025-07-27 08:07:48,207 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745892563/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 04:08:21] 2025-07-27 08:07:48,208 | INFO     | extracted standard info from prmon json
[2025-07-27 04:08:21] 2025-07-27 08:07:48,208 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 04:08:21] 2025-07-27 08:07:48,208 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 04:08:21] 2025-07-27 08:07:48,209 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 04:08:21] 2025-07-27 08:07:48,209 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 04:08:21] 2025-07-27 08:07:48,211 | INFO     | fitting pss+swap vs Time
[2025-07-27 04:08:21] 2025-07-27 08:07:48,211 | INFO     | sum of square deviations: 233637687.95604375
[2025-07-27 04:08:21] 2025-07-27 08:07:48,212 | INFO     | sum of deviations: -17570257379.24176
[2025-07-27 04:08:21] 2025-07-27 08:07:48,212 | INFO     | mean x: 1753600760.0219781
[2025-07-27 04:08:21] 2025-07-27 08:07:48,212 | INFO     | mean y: 2506302.1208791207
[2025-07-27 04:08:21] 2025-07-27 08:07:48,212 | INFO     | -- intersect: 131878561760.33485
[2025-07-27 04:08:21] 2025-07-27 08:07:48,212 | INFO     | intersect: 131878561760.33485
[2025-07-27 04:08:21] 2025-07-27 08:07:48,212 | INFO     | chi2: 0.2808556660943485
[2025-07-27 04:08:21] 2025-07-27 08:07:48,213 | INFO     | -- intersect: 131878561760.33485
[2025-07-27 04:08:21] 2025-07-27 08:07:48,213 | INFO     | current memory leak: -75.20 B/s (using 91 data points, chi2=0.28)
[2025-07-27 04:08:21] 2025-07-27 08:07:48,213 | INFO     | could have reported an average CPU frequency of 2626 MHz (7 samples)
[2025-07-27 04:08:21] 2025-07-27 08:07:48,213 | INFO     | ..............................
[2025-07-27 04:08:21] 2025-07-27 08:07:48,213 | INFO     | . Timing measurements:
[2025-07-27 04:08:21] 2025-07-27 08:07:48,213 | INFO     | . get job = 0 s
[2025-07-27 04:08:21] 2025-07-27 08:07:48,213 | INFO     | . initial setup = 2 s
[2025-07-27 04:08:21] 2025-07-27 08:07:48,214 | INFO     | . payload setup = 8 s
[2025-07-27 04:08:21] 2025-07-27 08:07:48,214 | INFO     | . stage-in = 0 s
[2025-07-27 04:08:21] 2025-07-27 08:07:48,214 | INFO     | . payload execution = 5952 s
[2025-07-27 04:08:21] 2025-07-27 08:07:48,214 | INFO     | . stage-out = 0 s
[2025-07-27 04:08:21] 2025-07-27 08:07:48,214 | INFO     | . log creation = 0 s
[2025-07-27 04:08:21] 2025-07-27 08:07:48,214 | INFO     | ..............................
[2025-07-27 04:08:21] 2025-07-27 08:07:48,305 | INFO     | 
[2025-07-27 04:08:21] 2025-07-27 08:07:48,305 | INFO     | job summary report
[2025-07-27 04:08:21] 2025-07-27 08:07:48,305 | INFO     | --------------------------------------------------
[2025-07-27 04:08:21] 2025-07-27 08:07:48,305 | INFO     | PanDA job id: 6745892563
[2025-07-27 04:08:21] 2025-07-27 08:07:48,305 | INFO     | task id: 45758466
[2025-07-27 04:08:21] 2025-07-27 08:07:48,305 | INFO     | errors: (none)
[2025-07-27 04:08:21] 2025-07-27 08:07:48,305 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 04:08:21] 2025-07-27 08:07:48,305 | INFO     | pilot state: finished 
[2025-07-27 04:08:21] 2025-07-27 08:07:48,305 | INFO     | transexitcode: 0
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | exeerrorcode: 0
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | exeerrordiag: 
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | exitcode: 0
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | exitmsg: OK
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | cpuconsumptiontime: 62233 s
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | nevents: 400
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | neventsw: 0
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | pid: 61028
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | pgrp: 61028
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | corecount: 12
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | event service: False
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | sizes: {0: 2397318, 1: 2397517, 6: 2397779, 11: 2397807, 5964: 2424417, 5965: 2433415, 5966: 2433599, 5972: 2433793}
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | --------------------------------------------------
[2025-07-27 04:08:21] 2025-07-27 08:07:48,306 | INFO     | 
[2025-07-27 04:08:21] 2025-07-27 08:07:48,307 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 04:08:21] 2025-07-27 08:07:48,328 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,329 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,329 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,329 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,329 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,329 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,329 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,329 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,329 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,329 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,330 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 04:08:21] 2025-07-27 08:07:48,331 | INFO     | job 6745892563 has completed (purged errors)
[2025-07-27 04:08:21] 2025-07-27 08:07:48,331 | INFO     | overall cleanup function is called
[2025-07-27 04:08:21] 2025-07-27 08:07:49,339 | INFO     | --- collectZombieJob: --- 10, [61028]
[2025-07-27 04:08:21] 2025-07-27 08:07:49,339 | INFO     | zombie collector waiting for pid 61028
[2025-07-27 04:08:21] 2025-07-27 08:07:49,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 04:08:21] 2025-07-27 08:07:49,339 | INFO     | collected zombie processes
[2025-07-27 04:08:21] 2025-07-27 08:07:49,339 | INFO     | will attempt to kill all subprocesses of pid=61028
[2025-07-27 04:08:21] 2025-07-27 08:07:49,613 | INFO     | process IDs to be killed: [61028] (in reverse order)
[2025-07-27 04:08:21] 2025-07-27 08:07:49,714 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 04:08:21] 2025-07-27 08:07:49,714 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 04:08:21] 2025-07-27 08:07:49,728 | INFO     | did not find any defunct processes belonging to 61028
[2025-07-27 04:08:21] 2025-07-27 08:07:49,738 | INFO     | did not find any defunct processes belonging to 61028
[2025-07-27 04:08:21] 2025-07-27 08:07:49,739 | INFO     | ready for new job
[2025-07-27 04:08:21] 2025-07-27 08:07:49,739 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 04:08:21] 2025-07-27 08:07:49,741 | INFO     | ***************************************
[2025-07-27 04:08:21] 2025-07-27 08:07:49,741 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 04:08:21] 2025-07-27 08:07:49,741 | INFO     | ***************************************
[2025-07-27 04:08:21] 2025-07-27 08:07:49,741 | INFO     | 
[2025-07-27 04:08:21] 2025-07-27 08:07:49,757 | INFO     | architecture information:
[2025-07-27 04:08:21] 2025-07-27 08:07:49,757 | INFO     | executing command: cat /etc/os-release
[2025-07-27 04:08:21] 2025-07-27 08:07:49,773 | INFO     | cat /etc/os-release:
[2025-07-27 04:08:21] NAME="CentOS Linux"
[2025-07-27 04:08:21] VERSION="7 (Core)"
[2025-07-27 04:08:21] ID="centos"
[2025-07-27 04:08:21] ID_LIKE="rhel fedora"
[2025-07-27 04:08:21] VERSION_ID="7"
[2025-07-27 04:08:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 04:08:21] ANSI_COLOR="0;31"
[2025-07-27 04:08:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 04:08:21] HOME_URL="https://www.centos.org/"
[2025-07-27 04:08:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 04:08:21] 
[2025-07-27 04:08:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 04:08:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 04:08:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 04:08:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 04:08:21] 
[2025-07-27 04:08:21] 2025-07-27 08:07:49,773 | INFO     | ***************************************
[2025-07-27 04:08:21] 2025-07-27 08:07:50,275 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 04:08:21] 2025-07-27 08:07:50,296 | INFO     | sufficient remaining disk space (76304875520 B)
[2025-07-27 04:08:21] 2025-07-27 08:07:50,296 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 04:08:21] 2025-07-27 08:07:50,297 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 04:08:21] 2025-07-27 08:07:50,297 | INFO     | update_server=False
[2025-07-27 04:08:21] 2025-07-27 08:07:50,297 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 04:08:21] 2025-07-27 08:07:50,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:08:21] 2025-07-27 08:07:50,297 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 04:08:21] 2025-07-27 08:07:50,297 | INFO     | aborting loop
[2025-07-27 04:08:21] 2025-07-27 08:07:50,306 | INFO     | all data control threads have been joined
[2025-07-27 04:08:21] 2025-07-27 08:07:50,737 | INFO     | all job control threads have been joined
[2025-07-27 04:08:21] 2025-07-27 08:07:51,302 | INFO     | [job] queue monitor thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:51,303 | INFO     | [job] job monitor thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:51,303 | INFO     | [job] retrieve thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:51,311 | INFO     | [data] control thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:51,460 | INFO     | [payload] failed_post thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:51,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 04:08:21] 2025-07-27 08:07:51,513 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:51,566 | INFO     | all payload control threads have been joined
[2025-07-27 04:08:21] 2025-07-27 08:07:51,742 | INFO     | [job] control thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:52,005 | INFO     | [job] validate thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:52,128 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:52,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 04:08:21] 2025-07-27 08:07:52,214 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:52,327 | INFO     | [payload] validate_post thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:52,572 | INFO     | [payload] control thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:52,705 | INFO     | [data] copytool_in thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:53,507 | INFO     | [data] copytool_out thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:07:56,201 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:08:01,265 | INFO     | job.realtimelogging is not enabled
[2025-07-27 04:08:21] 2025-07-27 08:08:02,270 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 04:08:21] 2025-07-27 08:08:02,702 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796039989056)>', '<ExcThread(monitor, started 139795414120192)>']
[2025-07-27 04:08:21] 2025-07-27 08:08:07,727 | INFO     | all workflow threads have been joined
[2025-07-27 04:08:21] 2025-07-27 08:08:07,727 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 04:08:21] 2025-07-27 08:08:07,728 | INFO     | traces error code: 0
[2025-07-27 04:08:21] 2025-07-27 08:08:07,728 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 04:08:21] 2025-07-27 08:08:20,964 | INFO     | PID=53962 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 04:08:21] 2025-07-27 08:08:20,965 | INFO     | .. there are 13 such processes running
[2025-07-27 04:08:21] 2025-07-27 08:08:20,965 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 04:08:21] 2025-07-27 08:08:20,965 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 04:08:21] 2025-07-27 08:08:20,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 04:08:21] 2025-07-27 08:08:20,965 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 04:08:21] 2025-07-27 08:08:20,965 | INFO     | [monitor] control thread has ended
[2025-07-27 04:08:21] 2025-07-27 08:08:21,141 [wrapper] ==== pilot stdout END ====
[2025-07-27 04:08:21] 2025-07-27 08:08:21,146 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 04:08:21] 2025-07-27 08:08:21,149 [wrapper] pilotpid: 53962
[2025-07-27 04:08:21] 2025-07-27 08:08:21,152 [wrapper] Pilot exit status: 0
[2025-07-27 04:08:21] 2025-07-27 08:08:21,166 [wrapper] pandaids: 6745892563
[2025-07-27 04:08:21] 2025-07-27 08:08:21,236 [wrapper] cleanup supervisor_pilot  321128 53963
[2025-07-27 04:08:21] 2025-07-27 08:08:21,239 [wrapper] Test setup, not cleaning
[2025-07-27 04:08:21] 2025-07-27 08:08:21,241 [wrapper] apfmon messages muted
[2025-07-27 04:08:21] 2025-07-27 08:08:21,244 [wrapper] ==== wrapper stdout END ====
[2025-07-27 04:08:21] 2025-07-27 08:08:21,247 [wrapper] ==== wrapper stderr END ====
[2025-07-27 04:08:21]  *** Error codes and diagnostics ***
[2025-07-27 04:08:21]     "exeErrorCode": 0,
[2025-07-27 04:08:21]     "exeErrorDiag": "",
[2025-07-27 04:08:21]     "pilotErrorCode": 0,
[2025-07-27 04:08:21]     "pilotErrorDiag": "",
[2025-07-27 04:08:21]  *** Listing of results directory ***
[2025-07-27 04:08:21] total 403304
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:24 pilot3.tar.gz
[2025-07-27 04:08:21] -rwx------. 1 boincer umatlas     36292 Jul 26 19:38 runpilot2-wrapper.sh
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 19:38 queuedata.json
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas       100 Jul 27 02:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 04:08:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 02:27 run_atlas
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas       105 Jul 27 02:27 job.xml
[2025-07-27 04:08:21] -rw-r--r--. 2 boincer umatlas 234047179 Jul 27 02:27 EVNT.45758464._000002.pool.root.1
[2025-07-27 04:08:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:27 start_atlas.sh
[2025-07-27 04:08:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 02:27 shared
[2025-07-27 04:08:21] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 02:27 input.tar.gz
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas         0 Jul 27 02:27 boinc_lockfile
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas      2581 Jul 27 02:27 pandaJob.out
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas    980125 Jul 27 02:27 agis_schedconf.cvmfs.json
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas   1593052 Jul 27 02:27 agis_ddmendpoints.agis.ALL.json
[2025-07-27 04:08:21] drwx------. 4 boincer umatlas      4096 Jul 27 02:27 pilot3
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 04:04 init_data.xml
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas 173193209 Jul 27 04:07 HITS.45758466._000028.pool.root.1
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas       530 Jul 27 04:07 boinc_task_state.xml
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas      1035 Jul 27 04:07 memory_monitor_summary.json
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas        95 Jul 27 04:07 pilot_heartbeat.json
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas    366821 Jul 27 04:07 log.45758466._000028.job.log.tgz.1
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas      7811 Jul 27 04:07 heartbeat.json
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 04:08 boinc_mmap_file
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas        27 Jul 27 04:08 wrapper_checkpoint.txt
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas       821 Jul 27 04:08 pilotlog.txt
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas    566495 Jul 27 04:08 log.45758466._000028.job.log.1
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas       357 Jul 27 04:08 output.list
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas       620 Jul 27 04:08 runtime_log
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas    952320 Jul 27 04:08 result.tar.gz
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas       654 Jul 27 04:08 TgpMDmzd3z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9TTLDma3eQlm.diag
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 04:08 runtime_log.err
[2025-07-27 04:08:21] -rw-r--r--. 1 boincer umatlas     21670 Jul 27 04:08 stderr.txt
[2025-07-27 04:08:21] HITS file was successfully produced:
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas 173193209 Jul 27 04:07 shared/HITS.pool.root.1
[2025-07-27 04:08:21]  *** Contents of shared directory: ***
[2025-07-27 04:08:21] total 399184
[2025-07-27 04:08:21] -rw-r--r--. 2 boincer umatlas 234047179 Jul 27 02:27 ATLAS.root_0
[2025-07-27 04:08:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 02:27 start_atlas.sh
[2025-07-27 04:08:21] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 02:27 input.tar.gz
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas 173193209 Jul 27 04:07 HITS.pool.root.1
[2025-07-27 04:08:21] -rw-------. 1 boincer umatlas    952320 Jul 27 04:08 result.tar.gz
04:08:22 (49621): run_atlas exited; CPU time 62297.879711
04:08:22 (49621): called boinc_finish(0)

</stderr_txt>
]]>

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