Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:25:59 (2087720): wrapper (7.7.26015): starting
03:25:59 (2087720): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 03:25:59] Arguments: --nthreads 12
[2025-07-27 03:25:59] Threads: 12
[2025-07-27 03:25:59] Checking for CVMFS
[2025-07-27 03:26:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 03:26:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 03:26:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 03:26:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 03:26:00] 2.12.6.0 999403 18062 267516 148804 3 105 19234687 32935937 9980 16776704 0 44591697 99.537 65455192 31759 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 03:26:00] CVMFS is ok
[2025-07-27 03:26:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 03:26:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 03:26:00] Further information can be found at the LHC@home message board.
[2025-07-27 03:26:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 03:26:00] Checking for apptainer binary...
[2025-07-27 03:26:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 03:26:00] Running /usr/bin/apptainer --version
[2025-07-27 03:26:00] apptainer version 1.4.1-1.el9
[2025-07-27 03:26:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 03:26:00] c6-2-29-4.aglt2.org
[2025-07-27 03:26:00] apptainer works
[2025-07-27 03:26:00] Set ATHENA_PROC_NUMBER=12
[2025-07-27 03:26:00] Set ATHENA_CORE_NUMBER=12
[2025-07-27 03:26:00] Starting ATLAS job with PandaID=6745904883
[2025-07-27 03:26:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:02:23]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:02:23]  mtime=0
[2025-07-27 05:02:23]  protocol_id=None
[2025-07-27 05:02:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 05:02:23]  replicas=None
[2025-07-27 05:02:23]  scope=mc23_13p6TeV
[2025-07-27 05:02:23]  status=None
[2025-07-27 05:02:23]  status_code=0
[2025-07-27 05:02:23]  storage_token=
[2025-07-27 05:02:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745904883/log.45743349._045547.job.log.tgz.1
[2025-07-27 05:02:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/60/log.45743349._045547.job.log.tgz.1
[2025-07-27 05:02:23]  workdir=None
[2025-07-27 05:02:23] ]
[2025-07-27 05:02:23] 2025-07-27 09:01:41,346 | INFO     | transferring file log.45743349._045547.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745904883/log.45743349._045547.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 05:02:23] 2025-07-27 09:01:41,346 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745904883/log.45743349._045547.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._045547.job
[2025-07-27 05:02:23] 2025-07-27 09:01:41,365 | INFO     | adding to output.list: log.45743349._045547.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/60/log.45743349._045547.job.log.tg
[2025-07-27 05:02:23] 2025-07-27 09:01:41,366 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 05:02:23] 2025-07-27 09:01:41,366 | INFO     | summary of transferred files:
[2025-07-27 05:02:23] 2025-07-27 09:01:41,367 | INFO     |  -- lfn=log.45743349._045547.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 05:02:23] 2025-07-27 09:01:41,367 | INFO     | stage-out finished correctly
[2025-07-27 05:02:23] 2025-07-27 09:01:42,971 | INFO     | monitor loop #394: job 0:6745904883 is in state 'finished'
[2025-07-27 05:02:23] 2025-07-27 09:01:42,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:02:23] 2025-07-27 09:01:43,769 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 05:02:23] 2025-07-27 09:01:45,231 | INFO     | job 6745904883 has state=finished
[2025-07-27 05:02:23] 2025-07-27 09:01:45,232 | INFO     | preparing for final server update for job 6745904883 in state='finished'
[2025-07-27 05:02:23] 2025-07-27 09:01:45,232 | INFO     | this job has now completed (state=finished)
[2025-07-27 05:02:23] 2025-07-27 09:01:45,233 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 05:02:23] 2025-07-27 09:01:45,233 | INFO     | log transfer has been attempted: DONE
[2025-07-27 05:02:23] 2025-07-27 09:01:45,233 | INFO     | job 6745904883 has finished - writing final server update
[2025-07-27 05:02:23] 2025-07-27 09:01:45,233 | INFO     | total number of processed events: 400 (read)
[2025-07-27 05:02:23] 2025-07-27 09:01:45,234 | INFO     | executing command: lscpu
[2025-07-27 05:02:23] 2025-07-27 09:01:45,296 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 05:02:23] 2025-07-27 09:01:45,474 | INFO     | monitor loop #395: job 0:6745904883 is in state 'finished'
[2025-07-27 05:02:23] 2025-07-27 09:01:45,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:02:23] 2025-07-27 09:01:47,977 | INFO     | monitor loop #396: job 0:6745904883 is in state 'finished'
[2025-07-27 05:02:23] 2025-07-27 09:01:47,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:02:23] 2025-07-27 09:01:50,482 | INFO     | monitor loop #397: job 0:6745904883 is in state 'finished'
[2025-07-27 05:02:23] 2025-07-27 09:01:50,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:02:23] 2025-07-27 09:01:50,643 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 05:02:23] 2025-07-27 09:01:50,663 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2546.8041964285717
[2025-07-27 05:02:23] 2025-07-27 09:01:50,671 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745904883/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:02:23] 2025-07-27 09:01:50,672 | INFO     | extracted standard info from prmon json
[2025-07-27 05:02:23] 2025-07-27 09:01:50,672 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:02:23] 2025-07-27 09:01:50,672 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:02:23] 2025-07-27 09:01:50,673 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:02:23] 2025-07-27 09:01:50,673 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:02:23] 2025-07-27 09:01:50,675 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:02:23] 2025-07-27 09:01:50,675 | INFO     | sum of square deviations: 204195558.3448281
[2025-07-27 05:02:23] 2025-07-27 09:01:50,675 | INFO     | sum of deviations: -22020546997.93104
[2025-07-27 05:02:23] 2025-07-27 09:01:50,676 | INFO     | mean x: 1753604136.137931
[2025-07-27 05:02:23] 2025-07-27 09:01:50,676 | INFO     | mean y: 2553351.16091954
[2025-07-27 05:02:23] 2025-07-27 09:01:50,676 | INFO     | -- intersect: 189112064883.14685
[2025-07-27 05:02:23] 2025-07-27 09:01:50,676 | INFO     | intersect: 189112064883.14685
[2025-07-27 05:02:23] 2025-07-27 09:01:50,676 | INFO     | chi2: 0.16815307241185823
[2025-07-27 05:02:23] 2025-07-27 09:01:50,676 | INFO     | -- intersect: 189112064883.14685
[2025-07-27 05:02:23] 2025-07-27 09:01:50,676 | INFO     | current memory leak: -107.84 B/s (using 87 data points, chi2=0.17)
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | could have reported an average CPU frequency of 2652 MHz (7 samples)
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | ..............................
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | . Timing measurements:
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | . get job = 0 s
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | . initial setup = 2 s
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | . payload setup = 9 s
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | . stage-in = 0 s
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | . payload execution = 5695 s
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | . stage-out = 1 s
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | . log creation = 0 s
[2025-07-27 05:02:23] 2025-07-27 09:01:50,677 | INFO     | ..............................
[2025-07-27 05:02:23] 2025-07-27 09:01:50,936 | INFO     | 
[2025-07-27 05:02:23] 2025-07-27 09:01:50,937 | INFO     | job summary report
[2025-07-27 05:02:23] 2025-07-27 09:01:50,937 | INFO     | --------------------------------------------------
[2025-07-27 05:02:23] 2025-07-27 09:01:50,937 | INFO     | PanDA job id: 6745904883
[2025-07-27 05:02:23] 2025-07-27 09:01:50,937 | INFO     | task id: 45743349
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | errors: (none)
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | pilot state: finished 
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | transexitcode: 0
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | exeerrorcode: 0
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | exeerrordiag: 
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | exitcode: 0
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | exitmsg: OK
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | cpuconsumptiontime: 49613 s
[2025-07-27 05:02:23] 2025-07-27 09:01:50,938 | INFO     | nevents: 400
[2025-07-27 05:02:23] 2025-07-27 09:01:50,939 | INFO     | neventsw: 0
[2025-07-27 05:02:23] 2025-07-27 09:01:50,939 | INFO     | pid: 2099411
[2025-07-27 05:02:23] 2025-07-27 09:01:50,939 | INFO     | pgrp: 2099411
[2025-07-27 05:02:23] 2025-07-27 09:01:50,939 | INFO     | corecount: 12
[2025-07-27 05:02:23] 2025-07-27 09:01:50,939 | INFO     | event service: False
[2025-07-27 05:02:23] 2025-07-27 09:01:50,939 | INFO     | sizes: {0: 2397418, 1: 2397418, 6: 2397708, 11: 2397736, 5708: 2424273, 5709: 2433271, 5712: 2433455, 5719: 2433649}
[2025-07-27 05:02:23] 2025-07-27 09:01:50,939 | INFO     | --------------------------------------------------
[2025-07-27 05:02:23] 2025-07-27 09:01:50,939 | INFO     | 
[2025-07-27 05:02:23] 2025-07-27 09:01:50,939 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 05:02:23] 2025-07-27 09:01:50,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,963 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,964 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,964 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,965 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,965 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,965 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:02:23] 2025-07-27 09:01:50,966 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,966 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:02:23] 2025-07-27 09:01:50,967 | INFO     | job 6745904883 has completed (purged errors)
[2025-07-27 05:02:23] 2025-07-27 09:01:50,967 | INFO     | overall cleanup function is called
[2025-07-27 05:02:23] 2025-07-27 09:01:51,975 | INFO     | --- collectZombieJob: --- 10, [2099411]
[2025-07-27 05:02:23] 2025-07-27 09:01:51,975 | INFO     | zombie collector waiting for pid 2099411
[2025-07-27 05:02:23] 2025-07-27 09:01:51,976 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:02:23] 2025-07-27 09:01:51,977 | INFO     | collected zombie processes
[2025-07-27 05:02:23] 2025-07-27 09:01:51,977 | INFO     | will attempt to kill all subprocesses of pid=2099411
[2025-07-27 05:02:23] 2025-07-27 09:01:52,322 | INFO     | process IDs to be killed: [2099411] (in reverse order)
[2025-07-27 05:02:23] 2025-07-27 09:01:52,440 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:02:23] 2025-07-27 09:01:52,440 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:02:23] 2025-07-27 09:01:52,452 | INFO     | did not find any defunct processes belonging to 2099411
[2025-07-27 05:02:23] 2025-07-27 09:01:52,464 | INFO     | did not find any defunct processes belonging to 2099411
[2025-07-27 05:02:23] 2025-07-27 09:01:52,464 | INFO     | ready for new job
[2025-07-27 05:02:23] 2025-07-27 09:01:52,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:02:23] 2025-07-27 09:01:52,466 | INFO     | ***************************************
[2025-07-27 05:02:23] 2025-07-27 09:01:52,466 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:02:23] 2025-07-27 09:01:52,466 | INFO     | ***************************************
[2025-07-27 05:02:23] 2025-07-27 09:01:52,466 | INFO     | 
[2025-07-27 05:02:23] 2025-07-27 09:01:52,483 | INFO     | architecture information:
[2025-07-27 05:02:23] 2025-07-27 09:01:52,483 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:02:23] 2025-07-27 09:01:52,502 | INFO     | cat /etc/os-release:
[2025-07-27 05:02:23] NAME="CentOS Linux"
[2025-07-27 05:02:23] VERSION="7 (Core)"
[2025-07-27 05:02:23] ID="centos"
[2025-07-27 05:02:23] ID_LIKE="rhel fedora"
[2025-07-27 05:02:23] VERSION_ID="7"
[2025-07-27 05:02:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:02:23] ANSI_COLOR="0;31"
[2025-07-27 05:02:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:02:23] HOME_URL="https://www.centos.org/"
[2025-07-27 05:02:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:02:23] 
[2025-07-27 05:02:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:02:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:02:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:02:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:02:23] 
[2025-07-27 05:02:23] 2025-07-27 09:01:52,502 | INFO     | ***************************************
[2025-07-27 05:02:23] 2025-07-27 09:01:53,006 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 05:02:23] 2025-07-27 09:01:53,028 | INFO     | sufficient remaining disk space (76450627584 B)
[2025-07-27 05:02:23] 2025-07-27 09:01:53,028 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:02:23] 2025-07-27 09:01:53,029 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:02:23] 2025-07-27 09:01:53,029 | INFO     | update_server=False
[2025-07-27 05:02:23] 2025-07-27 09:01:53,029 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:02:23] 2025-07-27 09:01:53,699 | INFO     | all data control threads have been joined
[2025-07-27 05:02:23] 2025-07-27 09:01:53,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:02:23] 2025-07-27 09:01:53,990 | INFO     | aborting loop
[2025-07-27 05:02:23] 2025-07-27 09:01:54,033 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:54,292 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:54,349 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:54,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:02:23] 2025-07-27 09:01:54,438 | INFO     | all payload control threads have been joined
[2025-07-27 05:02:23] 2025-07-27 09:01:54,450 | INFO     | all job control threads have been joined
[2025-07-27 05:02:23] 2025-07-27 09:01:54,471 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:02:23] 2025-07-27 09:01:54,497 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:54,617 | INFO     | [job] validate thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:54,658 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:54,705 | INFO     | [data] control thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:54,995 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:55,223 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:55,443 | INFO     | [payload] control thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:55,455 | INFO     | [job] control thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:55,503 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:55,552 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:55,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:02:23] 2025-07-27 09:01:56,477 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:56,773 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:58,396 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:02:23] 2025-07-27 09:01:59,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195595159360)>', '<ExcThread(monitor, started 140194971903744)>']
[2025-07-27 05:02:23] 2025-07-27 09:02:04,283 | INFO     | all workflow threads have been joined
[2025-07-27 05:02:23] 2025-07-27 09:02:04,283 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:02:23] 2025-07-27 09:02:04,283 | INFO     | traces error code: 0
[2025-07-27 05:02:23] 2025-07-27 09:02:04,283 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:02:23] 2025-07-27 09:02:23,021 | INFO     | PID=2092728 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 05:02:23] 2025-07-27 09:02:23,022 | INFO     | .. there are 12 such processes running
[2025-07-27 05:02:23] 2025-07-27 09:02:23,022 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:02:23] 2025-07-27 09:02:23,023 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:02:23] 2025-07-27 09:02:23,023 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:02:23] 2025-07-27 09:02:23,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:02:23] 2025-07-27 09:02:23,023 | INFO     | [monitor] control thread has ended
[2025-07-27 05:02:23] 2025-07-27 09:02:23,198 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:02:23] 2025-07-27 09:02:23,202 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:02:23] 2025-07-27 09:02:23,206 [wrapper] pilotpid: 2092728
[2025-07-27 05:02:23] 2025-07-27 09:02:23,210 [wrapper] Pilot exit status: 0
[2025-07-27 05:02:23] 2025-07-27 09:02:23,224 [wrapper] pandaids: 6745904883
[2025-07-27 05:02:23] 2025-07-27 09:02:23,297 [wrapper] cleanup supervisor_pilot 2421595 2092729
[2025-07-27 05:02:23] 2025-07-27 09:02:23,301 [wrapper] Test setup, not cleaning
[2025-07-27 05:02:23] 2025-07-27 09:02:23,307 [wrapper] apfmon messages muted
[2025-07-27 05:02:23] 2025-07-27 09:02:23,311 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:02:23] 2025-07-27 09:02:23,315 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:02:23]  *** Error codes and diagnostics ***
[2025-07-27 05:02:23]     "exeErrorCode": 0,
[2025-07-27 05:02:23]     "exeErrorDiag": "",
[2025-07-27 05:02:23]     "pilotErrorCode": 0,
[2025-07-27 05:02:23]     "pilotErrorDiag": "",
[2025-07-27 05:02:23]  *** Listing of results directory ***
[2025-07-27 05:02:23] total 351024
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-27 05:02:23] -rwx------. 1 boincer umatlas     36292 Jul 26 20:00 runpilot2-wrapper.sh
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:00 queuedata.json
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas       100 Jul 27 03:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:02:23] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 03:25 run_atlas
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas       105 Jul 27 03:25 job.xml
[2025-07-27 05:02:23] -rw-r--r--. 2 boincer umatlas 146487468 Jul 27 03:25 EVNT.45743347._000339.pool.root.1
[2025-07-27 05:02:23] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:25 start_atlas.sh
[2025-07-27 05:02:23] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 03:25 shared
[2025-07-27 05:02:23] -rw-r--r--. 2 boincer umatlas    564546 Jul 27 03:25 input.tar.gz
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas         0 Jul 27 03:25 boinc_lockfile
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas      2559 Jul 27 03:26 pandaJob.out
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas    980125 Jul 27 03:26 agis_schedconf.cvmfs.json
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas   1593052 Jul 27 03:26 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:02:23] drwx------. 6 boincer umatlas      4096 Jul 27 03:26 pilot3
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 04:56 init_data.xml
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas       529 Jul 27 05:01 boinc_task_state.xml
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas 207218730 Jul 27 05:01 HITS.45743349._045547.pool.root.1
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas      1041 Jul 27 05:01 memory_monitor_summary.json
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas    372955 Jul 27 05:01 log.45743349._045547.job.log.tgz.1
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas      7823 Jul 27 05:01 heartbeat.json
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas        27 Jul 27 05:02 wrapper_checkpoint.txt
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 05:02 boinc_mmap_file
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas        95 Jul 27 05:02 pilot_heartbeat.json
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas       823 Jul 27 05:02 pilotlog.txt
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas    539096 Jul 27 05:02 log.45743349._045547.job.log.1
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas       357 Jul 27 05:02 output.list
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas       620 Jul 27 05:02 runtime_log
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas    931840 Jul 27 05:02 result.tar.gz
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 05:02 runtime_log.err
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas       653 Jul 27 05:02 nuwKDmnz3z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmie1KDmgNvEPo.diag
[2025-07-27 05:02:23] -rw-r--r--. 1 boincer umatlas     21791 Jul 27 05:02 stderr.txt
[2025-07-27 05:02:23] HITS file was successfully produced:
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas 207218730 Jul 27 05:01 shared/HITS.pool.root.1
[2025-07-27 05:02:23]  *** Contents of shared directory: ***
[2025-07-27 05:02:23] total 346904
[2025-07-27 05:02:23] -rw-r--r--. 2 boincer umatlas 146487468 Jul 27 03:25 ATLAS.root_0
[2025-07-27 05:02:23] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 03:25 start_atlas.sh
[2025-07-27 05:02:23] -rw-r--r--. 2 boincer umatlas    564546 Jul 27 03:25 input.tar.gz
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas 207218730 Jul 27 05:01 HITS.pool.root.1
[2025-07-27 05:02:23] -rw-------. 1 boincer umatlas    931840 Jul 27 05:02 result.tar.gz
05:02:24 (2087720): run_atlas exited; CPU time 49726.655995
05:02:24 (2087720): called boinc_finish(0)

</stderr_txt>
]]>

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