Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
17:03:10 (793171): wrapper (7.7.26015): starting
17:03:10 (793171): wrapper: running run_atlas (--nthreads 3)
[2025-07-27 17:03:10] Arguments: --nthreads 3
[2025-07-27 17:03:10] Threads: 3
[2025-07-27 17:03:10] Checking for CVMFS
[2025-07-27 17:03:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:03:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:03:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:03:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:03:10] 2.9.2.0 2836443 4212 83436 148815 2 57 21203603 36864000 0 130560 0 3118891 99.990 152601 1686 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 17:03:10] CVMFS is ok
[2025-07-27 17:03:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:03:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:03:10] Further information can be found at the LHC@home message board.
[2025-07-27 17:03:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:03:10] Checking for apptainer binary...
[2025-07-27 17:03:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:03:10] Running /usr/bin/apptainer --version
[2025-07-27 17:03:10] apptainer version 1.3.6-6.1
[2025-07-27 17:03:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:03:10] atlasA303
[2025-07-27 17:03:10] apptainer works
[2025-07-27 17:03:10] Set ATHENA_PROC_NUMBER=3
[2025-07-27 17:03:10] Set ATHENA_CORE_NUMBER=3
[2025-07-27 17:03:10] Starting ATLAS job with PandaID=6745965986
[2025-07-27 17:03:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:38:45]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:38:45]  filesize=243825
[2025-07-27 18:38:45]  filetype=log
[2025-07-27 18:38:45]  guid=defa4ef6-bfa4-4c2d-bd97-ce5206b59429
[2025-07-27 18:38:45]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-27 18:38:45]  is_altstaged=None
[2025-07-27 18:38:45]  is_tar=False
[2025-07-27 18:38:45]  lfn=log.45758307._000069.job.log.tgz.1
[2025-07-27 18:38:45]  mtime=0
[2025-07-27 18:38:45]  protocol_id=None
[2025-07-27 18:38:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:38:45]  replicas=None
[2025-07-27 18:38:45]  scope=mc23_13p6TeV
[2025-07-27 18:38:45]  status=None
[2025-07-27 18:38:45]  status_code=0
[2025-07-27 18:38:45]  storage_token=
[2025-07-27 18:38:45]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6745965986/log.45758307._000069.job.log.tgz.1
[2025-07-27 18:38:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/82/log.45758307._000069.job.log.tgz.1
[2025-07-27 18:38:45]  workdir=None
[2025-07-27 18:38:45] ]
[2025-07-27 18:38:45] 2025-07-27 16:38:08,845 | INFO     | transferring file log.45758307._000069.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745965986/log.45758307._000069.job.log.tgz.1 to /local/data/boinc/
[2025-07-27 18:38:45] 2025-07-27 16:38:08,845 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745965986/log.45758307._000069.job.log.tgz.1 /local/data/boinc/slots/0/log.45758307._0000
[2025-07-27 18:38:45] 2025-07-27 16:38:08,860 | INFO     | adding to output.list: log.45758307._000069.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/82/log.45758307._000069.job.log.tg
[2025-07-27 18:38:45] 2025-07-27 16:38:08,860 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:38:45] 2025-07-27 16:38:08,860 | INFO     | summary of transferred files:
[2025-07-27 18:38:45] 2025-07-27 16:38:08,860 | INFO     |  -- lfn=log.45758307._000069.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:38:45] 2025-07-27 16:38:08,860 | INFO     | stage-out finished correctly
[2025-07-27 18:38:45] 2025-07-27 16:38:10,165 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:38:45] 2025-07-27 16:38:10,197 | INFO     | job 6745965986 has state=finished
[2025-07-27 18:38:45] 2025-07-27 16:38:10,197 | INFO     | preparing for final server update for job 6745965986 in state='finished'
[2025-07-27 18:38:45] 2025-07-27 16:38:10,198 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:38:45] 2025-07-27 16:38:10,198 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:38:45] 2025-07-27 16:38:10,198 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:38:45] 2025-07-27 16:38:10,198 | INFO     | job 6745965986 has finished - writing final server update
[2025-07-27 18:38:45] 2025-07-27 16:38:10,198 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:38:45] 2025-07-27 16:38:10,198 | INFO     | executing command: lscpu
[2025-07-27 18:38:45] 2025-07-27 16:38:10,212 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:38:45] 2025-07-27 16:38:10,668 | INFO     | monitor loop #439: job 0:6745965986 is in state 'finished'
[2025-07-27 18:38:45] 2025-07-27 16:38:10,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:38:45] 2025-07-27 16:38:12,646 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:38:45] 2025-07-27 16:38:12,647 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3601.703666666667
[2025-07-27 18:38:45] 2025-07-27 16:38:12,648 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745965986/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:38:45] 2025-07-27 16:38:12,648 | INFO     | extracted standard info from prmon json
[2025-07-27 18:38:45] 2025-07-27 16:38:12,648 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:38:45] 2025-07-27 16:38:12,648 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:38:45] 2025-07-27 16:38:12,648 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:38:45] 2025-07-27 16:38:12,648 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:38:45] 2025-07-27 16:38:12,649 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:38:45] 2025-07-27 16:38:12,649 | INFO     | sum of square deviations: 197203697.5
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | sum of deviations: -2379747494.0
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | mean x: 1753631514.5
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | mean y: 2369197.023255814
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | -- intersect: 21164245241.618206
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | intersect: 21164245241.618206
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | chi2: 0.048389463365168965
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | -- intersect: 21164245241.618206
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | current memory leak: -12.07 B/s (using 86 data points, chi2=0.05)
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | could have reported an average CPU frequency of 3885 MHz (7 samples)
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | ..............................
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | . Timing measurements:
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | . get job = 0 s
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | . initial setup = 1 s
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | . payload setup = 3 s
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | . stage-in = 0 s
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | . payload execution = 5671 s
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | . stage-out = 0 s
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | . log creation = 0 s
[2025-07-27 18:38:45] 2025-07-27 16:38:12,650 | INFO     | ..............................
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | 
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | job summary report
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | --------------------------------------------------
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | PanDA job id: 6745965986
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | task id: 45758307
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | errors: (none)
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | pilot state: finished 
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | transexitcode: 0
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | exeerrorcode: 0
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | exeerrordiag: 
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | exitcode: 0
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | exitmsg: OK
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | cpuconsumptiontime: 16420 s
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | nevents: 400
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | neventsw: 0
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | pid: 803430
[2025-07-27 18:38:45] 2025-07-27 16:38:12,892 | INFO     | pgrp: 803430
[2025-07-27 18:38:45] 2025-07-27 16:38:12,893 | INFO     | corecount: 3
[2025-07-27 18:38:45] 2025-07-27 16:38:12,893 | INFO     | event service: False
[2025-07-27 18:38:45] 2025-07-27 16:38:12,893 | INFO     | sizes: {0: 2397455, 2: 2397717, 10: 2397745, 5678: 2424523, 5679: 2433527, 5680: 2433583, 5683: 2433905}
[2025-07-27 18:38:45] 2025-07-27 16:38:12,893 | INFO     | --------------------------------------------------
[2025-07-27 18:38:45] 2025-07-27 16:38:12,893 | INFO     | 
[2025-07-27 18:38:45] 2025-07-27 16:38:12,893 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:38:45] 2025-07-27 16:38:12,909 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,910 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:38:45] 2025-07-27 16:38:12,910 | INFO     | job 6745965986 has completed (purged errors)
[2025-07-27 18:38:45] 2025-07-27 16:38:12,910 | INFO     | overall cleanup function is called
[2025-07-27 18:38:45] 2025-07-27 16:38:13,915 | INFO     | --- collectZombieJob: --- 10, [803430]
[2025-07-27 18:38:45] 2025-07-27 16:38:13,915 | INFO     | zombie collector waiting for pid 803430
[2025-07-27 18:38:45] 2025-07-27 16:38:13,915 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:38:45] 2025-07-27 16:38:13,915 | INFO     | collected zombie processes
[2025-07-27 18:38:45] 2025-07-27 16:38:13,915 | INFO     | will attempt to kill all subprocesses of pid=803430
[2025-07-27 18:38:45] 2025-07-27 16:38:13,960 | INFO     | process IDs to be killed: [803430] (in reverse order)
[2025-07-27 18:38:45] 2025-07-27 16:38:13,986 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:38:45] 2025-07-27 16:38:13,987 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:38:45] 2025-07-27 16:38:13,988 | INFO     | did not find any defunct processes belonging to 803430
[2025-07-27 18:38:45] 2025-07-27 16:38:13,989 | INFO     | did not find any defunct processes belonging to 803430
[2025-07-27 18:38:45] 2025-07-27 16:38:13,989 | INFO     | ready for new job
[2025-07-27 18:38:45] 2025-07-27 16:38:13,989 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:38:45] 2025-07-27 16:38:13,990 | INFO     | ***************************************
[2025-07-27 18:38:45] 2025-07-27 16:38:13,990 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:38:45] 2025-07-27 16:38:13,990 | INFO     | ***************************************
[2025-07-27 18:38:45] 2025-07-27 16:38:13,990 | INFO     | 
[2025-07-27 18:38:45] 2025-07-27 16:38:13,990 | INFO     | architecture information:
[2025-07-27 18:38:45] 2025-07-27 16:38:13,990 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:38:45] 2025-07-27 16:38:13,999 | INFO     | cat /etc/os-release:
[2025-07-27 18:38:45] NAME="CentOS Linux"
[2025-07-27 18:38:45] VERSION="7 (Core)"
[2025-07-27 18:38:45] ID="centos"
[2025-07-27 18:38:45] ID_LIKE="rhel fedora"
[2025-07-27 18:38:45] VERSION_ID="7"
[2025-07-27 18:38:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:38:45] ANSI_COLOR="0;31"
[2025-07-27 18:38:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:38:45] HOME_URL="https://www.centos.org/"
[2025-07-27 18:38:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:38:45] 
[2025-07-27 18:38:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:38:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:38:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:38:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:38:45] 
[2025-07-27 18:38:45] 2025-07-27 16:38:14,000 | INFO     | ***************************************
[2025-07-27 18:38:45] 2025-07-27 16:38:14,503 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 18:38:45] 2025-07-27 16:38:14,516 | INFO     | sufficient remaining disk space (379285667840 B)
[2025-07-27 18:38:45] 2025-07-27 16:38:14,516 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:38:45] 2025-07-27 16:38:14,516 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:38:45] 2025-07-27 16:38:14,516 | INFO     | update_server=False
[2025-07-27 18:38:45] 2025-07-27 16:38:14,516 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:38:45] 2025-07-27 16:38:14,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:38:45] 2025-07-27 16:38:14,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:38:45] 2025-07-27 16:38:14,517 | INFO     | aborting loop
[2025-07-27 18:38:45] 2025-07-27 16:38:14,517 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:38:45] 2025-07-27 16:38:14,974 | INFO     | all data control threads have been joined
[2025-07-27 18:38:45] 2025-07-27 16:38:15,286 | INFO     | all job control threads have been joined
[2025-07-27 18:38:45] 2025-07-27 16:38:15,453 | INFO     | all payload control threads have been joined
[2025-07-27 18:38:45] 2025-07-27 16:38:15,522 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:15,522 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:15,523 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:15,980 | INFO     | [data] control thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:16,062 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:16,160 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:16,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:38:45] 2025-07-27 16:38:16,292 | INFO     | [job] control thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:16,459 | INFO     | [payload] control thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:16,523 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:16,568 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:16,688 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:16,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:16,891 | INFO     | [job] validate thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:17,006 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:17,008 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:20,210 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:38:45] 2025-07-27 16:38:21,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139793386026816)>', '<ExcThread(monitor, started 139792897521408)>']
[2025-07-27 18:38:45] 2025-07-27 16:38:26,735 | INFO     | all workflow threads have been joined
[2025-07-27 18:38:45] 2025-07-27 16:38:26,735 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:38:45] 2025-07-27 16:38:26,736 | INFO     | traces error code: 0
[2025-07-27 18:38:45] 2025-07-27 16:38:26,736 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:38:45] 2025-07-27 16:38:45,581 | INFO     | PID=796841 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 18:38:45] 2025-07-27 16:38:45,581 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:38:45] 2025-07-27 16:38:45,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:38:45] 2025-07-27 16:38:45,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:38:45] 2025-07-27 16:38:45,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:38:45] 2025-07-27 16:38:45,581 | INFO     | [monitor] control thread has ended
[2025-07-27 18:38:45] 2025-07-27 16:38:45,628 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:38:45] 2025-07-27 16:38:45,631 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:38:45] 2025-07-27 16:38:45,633 [wrapper] pilotpid: 796841
[2025-07-27 18:38:45] 2025-07-27 16:38:45,636 [wrapper] Pilot exit status: 0
[2025-07-27 18:38:45] 2025-07-27 16:38:45,643 [wrapper] pandaids: 6745965986
[2025-07-27 18:38:45] 2025-07-27 16:38:45,661 [wrapper] cleanup supervisor_pilot  836063 796842
[2025-07-27 18:38:45] 2025-07-27 16:38:45,663 [wrapper] Test setup, not cleaning
[2025-07-27 18:38:45] 2025-07-27 16:38:45,666 [wrapper] apfmon messages muted
[2025-07-27 18:38:45] 2025-07-27 16:38:45,668 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:38:45] 2025-07-27 16:38:45,670 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:38:45]  *** Error codes and diagnostics ***
[2025-07-27 18:38:45]     "exeErrorCode": 0,
[2025-07-27 18:38:45]     "exeErrorDiag": "",
[2025-07-27 18:38:45]     "pilotErrorCode": 0,
[2025-07-27 18:38:45]     "pilotErrorDiag": "",
[2025-07-27 18:38:45]  *** Listing of results directory ***
[2025-07-27 18:38:45] total 411748
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc    530466 Jul 27 04:22 pilot3.tar.gz
[2025-07-27 18:38:45] -rwx------ 1 boinc boinc     36292 Jul 27 04:33 runpilot2-wrapper.sh
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc      5112 Jul 27 04:33 queuedata.json
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc       100 Jul 27 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:38:45] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 17:03 run_atlas
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc       105 Jul 27 17:03 job.xml
[2025-07-27 18:38:45] -rw-r--r-- 2 boinc boinc 243794340 Jul 27 17:03 EVNT.45758305._000003.pool.root.1
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc      6932 Jul 27 17:03 init_data.xml
[2025-07-27 18:38:45] drwxrwx--x 2 boinc boinc      4096 Jul 27 17:03 shared
[2025-07-27 18:38:45] -rw-r--r-- 2 boinc boinc    542865 Jul 27 17:03 input.tar.gz
[2025-07-27 18:38:45] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:03 start_atlas.sh
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc         0 Jul 27 17:03 boinc_lockfile
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc      2545 Jul 27 17:03 pandaJob.out
[2025-07-27 18:38:45] -rw------- 1 boinc boinc    980109 Jul 27 17:03 agis_schedconf.cvmfs.json
[2025-07-27 18:38:45] -rw------- 1 boinc boinc   1593052 Jul 27 17:03 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:38:45] drwx------ 4 boinc boinc      4096 Jul 27 17:03 pilot3
[2025-07-27 18:38:45] -rw------- 1 boinc boinc 172372546 Jul 27 18:37 HITS.45758307._000069.pool.root.1
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc       529 Jul 27 18:38 boinc_task_state.xml
[2025-07-27 18:38:45] -rw------- 1 boinc boinc      1017 Jul 27 18:38 memory_monitor_summary.json
[2025-07-27 18:38:45] -rw------- 1 boinc boinc    243825 Jul 27 18:38 log.45758307._000069.job.log.tgz.1
[2025-07-27 18:38:45] -rw------- 1 boinc boinc      7735 Jul 27 18:38 heartbeat.json
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc      8192 Jul 27 18:38 boinc_mmap_file
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc        27 Jul 27 18:38 wrapper_checkpoint.txt
[2025-07-27 18:38:45] -rw------- 1 boinc boinc       746 Jul 27 18:38 pilotlog.txt
[2025-07-27 18:38:45] -rw------- 1 boinc boinc        95 Jul 27 18:38 pilot_heartbeat.json
[2025-07-27 18:38:45] -rw------- 1 boinc boinc    548055 Jul 27 18:38 log.45758307._000069.job.log.1
[2025-07-27 18:38:45] -rw------- 1 boinc boinc       357 Jul 27 18:38 output.list
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc       620 Jul 27 18:38 runtime_log
[2025-07-27 18:38:45] -rw------- 1 boinc boinc    808960 Jul 27 18:38 result.tar.gz
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc      8749 Jul 27 18:38 runtime_log.err
[2025-07-27 18:38:45] -rw------- 1 boinc boinc       661 Jul 27 18:38 OUUNDmlN6z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcxTLDmdMOryn.diag
[2025-07-27 18:38:45] -rw-r--r-- 1 boinc boinc     21212 Jul 27 18:38 stderr.txt
[2025-07-27 18:38:45] HITS file was successfully produced:
[2025-07-27 18:38:45] -rw------- 1 boinc boinc 172372546 Jul 27 18:37 shared/HITS.pool.root.1
[2025-07-27 18:38:45]  *** Contents of shared directory: ***
[2025-07-27 18:38:45] total 407768
[2025-07-27 18:38:45] -rw-r--r-- 2 boinc boinc 243794340 Jul 27 17:03 ATLAS.root_0
[2025-07-27 18:38:45] -rw-r--r-- 2 boinc boinc    542865 Jul 27 17:03 input.tar.gz
[2025-07-27 18:38:45] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:03 start_atlas.sh
[2025-07-27 18:38:45] -rw------- 1 boinc boinc 172372546 Jul 27 18:37 HITS.pool.root.1
[2025-07-27 18:38:45] -rw------- 1 boinc boinc    808960 Jul 27 18:38 result.tar.gz
18:38:47 (793171): run_atlas exited; CPU time 16439.851948
18:38:47 (793171): called boinc_finish(0)

</stderr_txt>
]]>

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