Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 22:12:24 (5744): Detected: vboxwrapper 26206
2025-07-27 22:12:24 (5744): Detected: BOINC client v8.2.4
2025-07-27 22:12:25 (5744): Detected: VirtualBox VboxManage Interface (Version: 5.1.26)
2025-07-27 22:12:26 (5744): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 22:12:26 (5744): Create VM. (boinc_94c746d279135424, slot#1)
2025-07-27 22:12:29 (5744): Setting Memory Size for VM. (4400MB)
2025-07-27 22:12:29 (5744): Setting CPU Count for VM. (4)
2025-07-27 22:12:31 (5744): Setting Chipset Options for VM.
2025-07-27 22:12:31 (5744): Setting Graphics Controller Options for VM.
2025-07-27 22:12:32 (5744): Setting Boot Options for VM.
2025-07-27 22:12:33 (5744): Setting Network Configuration for NAT.
2025-07-27 22:12:33 (5744): Enabling VM Network Access.
2025-07-27 22:12:34 (5744): Disabling USB Support for VM.
2025-07-27 22:12:35 (5744): Disabling COM Port Support for VM.
2025-07-27 22:12:35 (5744): Disabling LPT Port Support for VM.
2025-07-27 22:12:36 (5744): Disabling Audio Support for VM.
2025-07-27 22:12:37 (5744): Disabling Clipboard Support for VM.
2025-07-27 22:12:38 (5744): Disabling Drag and Drop Support for VM.
2025-07-27 22:12:39 (5744): Adding storage controller(s) to VM.
2025-07-27 22:12:40 (5744): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 22:12:47 (5744): Adding VirtualBox Guest Additions to VM.
2025-07-27 22:12:48 (5744): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 22:12:49 (5744): forwarding host port 63243 to guest port 80
2025-07-27 22:12:51 (5744): Enabling remote desktop for VM.
2025-07-27 22:12:53 (5744): Enabling shared directory for VM.
2025-07-27 22:12:55 (5744): Starting VM using VBoxManage interface. (boinc_94c746d279135424, slot#1)
2025-07-27 22:13:01 (5744): Successfully started VM. (PID = '2892')
2025-07-27 22:13:01 (5744): Reporting VM Process ID to BOINC.
2025-07-27 22:13:01 (5744): Guest Log: BIOS: VirtualBox 5.1.26
2025-07-27 22:13:01 (5744): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 22:13:01 (5744): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 22:13:01 (5744): Detected: Web Application Enabled (http://localhost:63243)
2025-07-27 22:13:01 (5744): Detected: Remote Desktop Enabled (localhost:63244)
2025-07-27 22:13:01 (5744): Preference change detected
2025-07-27 22:13:01 (5744): Setting CPU throttle for VM. (100%)
2025-07-27 22:13:02 (5744): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 22:13:03 (5744): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 22:13:03 (5744): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 22:13:08 (5744): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 22:13:08 (5744): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 22:13:08 (5744): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 22:13:26 (5744): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 22:13:26 (5744): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 22:14:43 (5744): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.000918 main     Log opened 2025-07-27T22:14:39.434924000Z
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.001312 main     OS Product: Linux
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.001547 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.001697 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.001808 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.001812 main     Process ID: 1300
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.001814 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.036059 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.037911 main     Error: Service 'control' failed to initialize: VERR_INVALID_PARAMETER
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.038138 main     Session 0 is about to close ...
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.038193 main     Stopping all guest processes ...
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.038244 main     Closing all guest files ...
2025-07-27 22:14:43 (5744): Guest Log: 00:00:00.038461 main     Ended.
2025-07-27 22:14:43 (5744): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 22:14:43 (5744): Guest Log: [INFO] Mounting shared directory
2025-07-27 22:14:43 (5744): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 22:14:51 (5744): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 22:14:51 (5744): Guest Log: [INFO] Detected branch: prod
2025-07-27 22:14:51 (5744): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 22:14:51 (5744): Guest Log: Copying input files
2025-07-27 22:14:55 (5744): Guest Log: Copied input files into RunAtlas.
2025-07-27 22:14:55 (5744): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-27 22:14:55 (5744): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-27 22:14:55 (5744): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-27 22:14:55 (5744): Guest Log: Further information can be found at the LHC@home message board.
2025-07-27 22:15:05 (5744): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 22:15:06 (5744): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 22:15:06 (5744): Guest Log: 2.6.3.0 1570 0 30160 148823 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-27 22:15:40 (5744): Guest Log: copied the webapp to /var/www
2025-07-27 22:15:43 (5744): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-27 22:15:43 (5744): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-27 22:16:09 (5744): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 22:16:09 (5744): Guest Log:  *** Starting ATLAS job. (PandaID=6745902022 taskID=45759252) ***
2025-07-27 23:53:24 (5744): Status Report: Elapsed Time: '6000.776859'
2025-07-27 23:53:24 (5744): Status Report: CPU Time: '17562.140177'
2025-07-28 01:33:30 (5744): Status Report: Elapsed Time: '12000.776859'
2025-07-28 01:33:30 (5744): Status Report: CPU Time: '35483.285456'
2025-07-28 03:13:35 (5744): Status Report: Elapsed Time: '18000.776859'
2025-07-28 03:13:35 (5744): Status Report: CPU Time: '53436.878942'
2025-07-28 04:53:43 (5744): Status Report: Elapsed Time: '24000.776859'
2025-07-28 04:53:43 (5744): Status Report: CPU Time: '71351.862181'
2025-07-28 06:33:55 (5744): Status Report: Elapsed Time: '30000.992514'
2025-07-28 06:33:55 (5744): Status Report: CPU Time: '89164.243562'
2025-07-28 08:14:01 (5744): Status Report: Elapsed Time: '36001.204168'
2025-07-28 08:14:01 (5744): Status Report: CPU Time: '107088.555661'
2025-07-28 09:54:07 (5744): Status Report: Elapsed Time: '42002.076033'
2025-07-28 09:54:07 (5744): Status Report: CPU Time: '125020.636609'
2025-07-28 11:34:18 (5744): Status Report: Elapsed Time: '48002.378698'
2025-07-28 11:34:18 (5744): Status Report: CPU Time: '142977.490516'
2025-07-28 13:14:22 (5744): Status Report: Elapsed Time: '54002.378698'
2025-07-28 13:14:22 (5744): Status Report: CPU Time: '160910.195469'
2025-07-28 14:54:27 (5744): Status Report: Elapsed Time: '60002.378698'
2025-07-28 14:54:27 (5744): Status Report: CPU Time: '178854.569296'
2025-07-28 16:34:32 (5744): Status Report: Elapsed Time: '66002.378698'
2025-07-28 16:34:32 (5744): Status Report: CPU Time: '196783.467824'
2025-07-28 18:14:37 (5744): Status Report: Elapsed Time: '72002.670362'
2025-07-28 18:14:37 (5744): Status Report: CPU Time: '214725.454836'
2025-07-28 19:54:42 (5744): Status Report: Elapsed Time: '78002.670362'
2025-07-28 19:54:42 (5744): Status Report: CPU Time: '232669.875464'
2025-07-28 20:38:39 (5744): Guest Log:  *** Job finished ***
2025-07-28 20:38:39 (5744): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:24,380 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:24,915 | INFO     | [job] queue monitor thread has finished
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:28,430 | INFO     | [data] queue_monitor thread has finished
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:29,304 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140250749331264)>', '<ExcThread(monitor, started 140249791452928)>']
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:30,156 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:30,157 | INFO     | [monitor] control thread has ended
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:34,310 | INFO     | all workflow threads have been joined
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:34,311 | INFO     | end of generic workflow (traces error code: 0)
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:34,312 | INFO     | traces error code: 0
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:34,314 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:34,667 [wrapper] ==== pilot stdout END ====
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:34,679 [wrapper] ==== wrapper stdout RESUME ====
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:34,690 [wrapper] pilotpid: 5925
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:34,703 [wrapper] Pilot exit status: 0
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:35,073 [wrapper] pandaids: 6745902022
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:35,156 [wrapper] cleanup supervisor_pilot  3643 5926
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:35,166 [wrapper] Test setup, not cleaning
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:35,176 [wrapper] apfmon messages muted
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:35,187 [wrapper] ==== wrapper stdout END ====
2025-07-28 20:38:39 (5744): Guest Log: 2025-07-28 20:38:35,197 [wrapper] ==== wrapper stderr END ====
2025-07-28 20:38:39 (5744): Guest Log:  *** Error codes and diagnostics ***
2025-07-28 20:38:39 (5744): Guest Log:     "exeErrorCode": 0,
2025-07-28 20:38:39 (5744): Guest Log:     "exeErrorDiag": "",
2025-07-28 20:38:39 (5744): Guest Log:     "pilotErrorCode": 0,
2025-07-28 20:38:39 (5744): Guest Log:     "pilotErrorDiag": "",
2025-07-28 20:38:39 (5744): Guest Log:  *** Listing of results directory ***
2025-07-28 20:38:39 (5744): Guest Log: total 167500
2025-07-28 20:38:39 (5744): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 26 23:40 pilot3.tar.gz
2025-07-28 20:38:39 (5744): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 26 23:53 queuedata.json
2025-07-28 20:38:39 (5744): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 26 23:53 runpilot2-wrapper.sh
2025-07-28 20:38:39 (5744): Guest Log: -rwxr-xr-x. 1 atlas atlas      5753 Jul 27 22:14 init_data.xml
2025-07-28 20:38:39 (5744): Guest Log: -rwxr-xr-x. 1 atlas atlas    542889 Jul 27 22:14 input.tar.gz
2025-07-28 20:38:39 (5744): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 27 22:14 start_atlas.sh
2025-07-28 20:38:39 (5744): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 27 22:14 EVNT.45759247._000001.pool.root.1 -> /data/./ATLAS.root_0
2025-07-28 20:38:39 (5744): Guest Log: -rw-r--r--. 1 atlas atlas      2574 Jul 27 22:16 pandaJob.out
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas    980109 Jul 27 22:19 agis_schedconf.cvmfs.json
2025-07-28 20:38:39 (5744): Guest Log: drwx------. 4 atlas atlas      4096 Jul 27 22:19 pilot3
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas 154982384 Jul 28 20:36 HITS.45759252._000013.pool.root.1
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas        95 Jul 28 20:37 pilot_heartbeat.json
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas      1037 Jul 28 20:37 memory_monitor_summary.json
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas   1589827 Jul 28 20:37 agis_ddmendpoints.agis.ALL.json
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas    804534 Jul 28 20:37 log.45759252._000013.job.log.tgz.1
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas      7834 Jul 28 20:38 heartbeat.json
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 28 20:38 pilotlog.txt
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas   5560012 Jul 28 20:38 log.45759252._000013.job.log.1
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas       357 Jul 28 20:38 output.list
2025-07-28 20:38:39 (5744): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 28 20:38 runtime_log
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas   6379520 Jul 28 20:38 result.tar.gz
2025-07-28 20:38:39 (5744): Guest Log: -rw-r--r--. 1 atlas atlas      8579 Jul 28 20:38 runtime_log.err
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas       655 Jul 28 20:38 mDkMDm2s3z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZXTLDm5BCaXn.diag
2025-07-28 20:38:39 (5744): Guest Log: Looking for outputfile HITS.45759252._000013.pool.root.1
2025-07-28 20:38:39 (5744): Guest Log: HITS file was successfully produced
2025-07-28 20:38:39 (5744): Guest Log: -rw-------. 1 atlas atlas 154982384 Jul 28 20:36 /home/atlas/RunAtlas/HITS.45759252._000013.pool.root.1
2025-07-28 20:38:43 (5744): Guest Log: Successfully finished the ATLAS job!
2025-07-28 20:38:43 (5744): Guest Log: Copying the results back to the shared directory!
2025-07-28 20:38:43 (5744): Guest Log:  *** Contents of shared directory: ***
2025-07-28 20:38:43 (5744): Guest Log: total 360534
2025-07-28 20:38:43 (5744): Guest Log: -rwxrwxrwx. 1 root root 207260024 Jul 27 20:12 ATLAS.root_0
2025-07-28 20:38:43 (5744): Guest Log: -rwxrwxrwx. 1 root root 154982384 Jul 28 18:38 HITS.pool.root.1
2025-07-28 20:38:43 (5744): Guest Log: -rwxrwxrwx. 1 root root      5753 Jul 27 20:12 init_data.xml
2025-07-28 20:38:43 (5744): Guest Log: -rwxrwxrwx. 1 root root    542889 Jul 27 04:49 input.tar.gz
2025-07-28 20:38:43 (5744): Guest Log: -rwxrwxrwx. 1 root root   6379520 Jul 28 18:38 result.tar.gz
2025-07-28 20:38:43 (5744): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 27 04:49 start_atlas.sh
2025-07-28 20:38:43 (5744): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-28 20:38:43 (5744): VM Completion File Detected.
2025-07-28 20:38:43 (5744): Powering off VM.
2025-07-28 20:38:47 (5744): Successfully stopped VM.
2025-07-28 20:38:47 (5744): Deregistering VM. (boinc_94c746d279135424, slot#1)
2025-07-28 20:38:48 (5744): Removing network bandwidth throttle group from VM.
2025-07-28 20:38:49 (5744): Removing VM from VirtualBox.
20:38:55 (5744): called boinc_finish(0)

</stderr_txt>
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