Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:04:34 (2009202): wrapper (7.7.26015): starting
23:04:34 (2009202): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 23:04:34] Arguments: --nthreads 12
[2025-07-27 23:04:34] Threads: 12
[2025-07-27 23:04:34] Checking for CVMFS
[2025-07-27 23:04:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:04:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:04:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:04:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:04:34] 2.13.1.0 50093 8268 74816 148827 0 188 3485678 4096001 1815 130560 0 16683247 99.996 301953 287 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-27 23:04:34] CVMFS is ok
[2025-07-27 23:04:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:04:34] Checking for apptainer binary...
[2025-07-27 23:04:34] apptainer is not installed, using version from CVMFS
[2025-07-27 23:04:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:04:34] ryzen7
[2025-07-27 23:04:34] apptainer works
[2025-07-27 23:04:34] Set ATHENA_PROC_NUMBER=12
[2025-07-27 23:04:34] Set ATHENA_CORE_NUMBER=12
[2025-07-27 23:04:34] Starting ATLAS job with PandaID=6745891080
[2025-07-27 23:04:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:44:44]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:44:44]  storage_token=
[2025-07-28 00:44:44]  surl=/opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745891080/log.45758408._000067.job.log.tgz.1
[2025-07-28 00:44:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/5f/log.45758408._000067.job.log.tgz.1
[2025-07-28 00:44:44]  workdir=None
[2025-07-28 00:44:44] ]
[2025-07-28 00:44:44] 2025-07-28 00:44:06,813 | INFO     | transferring file log.45758408._000067.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745891080/log.45758408._000067.job.log.tgz.1 t
[2025-07-28 00:44:44] 2025-07-28 00:44:06,813 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745891080/log.45758408._000067.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-28 00:44:44] 2025-07-28 00:44:06,822 | INFO     | adding to output.list: log.45758408._000067.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/5f/log.45758408._000067.job.log.tg
[2025-07-28 00:44:44] 2025-07-28 00:44:06,823 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:44:44] 2025-07-28 00:44:06,823 | INFO     | summary of transferred files:
[2025-07-28 00:44:44] 2025-07-28 00:44:06,823 | INFO     |  -- lfn=log.45758408._000067.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:44:44] 2025-07-28 00:44:06,823 | INFO     | stage-out finished correctly
[2025-07-28 00:44:44] 2025-07-28 00:44:10,098 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:44:44] 2025-07-28 00:44:10,150 | INFO     | job 6745891080 has state=finished
[2025-07-28 00:44:44] 2025-07-28 00:44:10,150 | INFO     | preparing for final server update for job 6745891080 in state='finished'
[2025-07-28 00:44:44] 2025-07-28 00:44:10,150 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:44:44] 2025-07-28 00:44:10,150 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:44:44] 2025-07-28 00:44:10,151 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:44:44] 2025-07-28 00:44:10,151 | INFO     | job 6745891080 has finished - writing final server update
[2025-07-28 00:44:44] 2025-07-28 00:44:10,151 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:44:44] 2025-07-28 00:44:10,151 | INFO     | executing command: lscpu
[2025-07-28 00:44:44] 2025-07-28 00:44:10,186 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:44:44] 2025-07-28 00:44:10,440 | WARNING  | process 2019470 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 00:44:44] 2025-07-28 00:44:10,440 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745891080/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:44:44] 2025-07-28 00:44:10,440 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745891080/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:44:44] 2025-07-28 00:44:10,441 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4356621 B
[2025-07-28 00:44:44] 2025-07-28 00:44:10,441 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16685 B
[2025-07-28 00:44:44] 2025-07-28 00:44:10,441 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-07-28 00:44:44] 2025-07-28 00:44:12,556 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 00:44:44] 2025-07-28 00:44:12,561 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4143.189375
[2025-07-28 00:44:44] 2025-07-28 00:44:12,563 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745891080/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,563 | INFO     | extracted standard info from prmon json
[2025-07-28 00:44:44] 2025-07-28 00:44:12,564 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:44:44] 2025-07-28 00:44:12,564 | INFO     | sufficient remaining disk space (150359506944 B)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,564 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:44:44] 2025-07-28 00:44:12,564 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,564 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:44:44] 2025-07-28 00:44:12,564 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:44:44] 2025-07-28 00:44:12,566 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:44:44] 2025-07-28 00:44:12,566 | INFO     | sum of square deviations: 233641590.0
[2025-07-28 00:44:44] 2025-07-28 00:44:12,566 | INFO     | sum of deviations: 3002338138.0
[2025-07-28 00:44:44] 2025-07-28 00:44:12,566 | INFO     | mean x: 1753660552.0
[2025-07-28 00:44:44] 2025-07-28 00:44:12,566 | INFO     | mean y: 2676610.098901099
[2025-07-28 00:44:44] 2025-07-28 00:44:12,567 | INFO     | -- intersect: -22532189534.13395
[2025-07-28 00:44:44] 2025-07-28 00:44:12,567 | INFO     | intersect: -22532189534.13395
[2025-07-28 00:44:44] 2025-07-28 00:44:12,567 | INFO     | chi2: 0.0511911269422983
[2025-07-28 00:44:44] 2025-07-28 00:44:12,567 | INFO     | -- intersect: -22532189534.13395
[2025-07-28 00:44:44] 2025-07-28 00:44:12,567 | INFO     | current memory leak: 12.85 B/s (using 91 data points, chi2=0.05)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,567 | INFO     | could have reported an average CPU frequency of 4128 MHz (7 samples)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,567 | INFO     | ..............................
[2025-07-28 00:44:44] 2025-07-28 00:44:12,568 | INFO     | . Timing measurements:
[2025-07-28 00:44:44] 2025-07-28 00:44:12,568 | INFO     | . get job = 0 s
[2025-07-28 00:44:44] 2025-07-28 00:44:12,568 | INFO     | . initial setup = 1 s
[2025-07-28 00:44:44] 2025-07-28 00:44:12,568 | INFO     | . payload setup = 3 s
[2025-07-28 00:44:44] 2025-07-28 00:44:12,568 | INFO     | . stage-in = 0 s
[2025-07-28 00:44:44] 2025-07-28 00:44:12,568 | INFO     | . payload execution = 5946 s
[2025-07-28 00:44:44] 2025-07-28 00:44:12,568 | INFO     | . stage-out = 0 s
[2025-07-28 00:44:44] 2025-07-28 00:44:12,568 | INFO     | . log creation = 0 s
[2025-07-28 00:44:44] 2025-07-28 00:44:12,568 | INFO     | ..............................
[2025-07-28 00:44:44] 2025-07-28 00:44:12,574 | INFO     | size of work directory /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745891080: 4663403 B (within 2537553920 B limit)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,594 | INFO     | pfn file=/opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745891080/HITS.45758408._000067.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,604 | INFO     | total size of present files: 0 B (workdir size: 4663403 B)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,620 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745891080/HITS.45758408._000067.pool.root.1 since it does n
[2025-07-28 00:44:44] 2025-07-28 00:44:12,631 | INFO     | 
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | job summary report
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | --------------------------------------------------
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | PanDA job id: 6745891080
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | task id: 45758408
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | errors: (none)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | pilot state: finished 
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | transexitcode: 0
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | exeerrorcode: 0
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | exeerrordiag: 
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | exitcode: 0
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | exitmsg: OK
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | cpuconsumptiontime: 32222 s
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | nevents: 400
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | neventsw: 0
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | pid: 2019470
[2025-07-28 00:44:44] 2025-07-28 00:44:12,632 | INFO     | pgrp: 2019470
[2025-07-28 00:44:44] 2025-07-28 00:44:12,633 | INFO     | corecount: 12
[2025-07-28 00:44:44] 2025-07-28 00:44:12,633 | INFO     | event service: False
[2025-07-28 00:44:44] 2025-07-28 00:44:12,633 | INFO     | sizes: {0: 2397507, 3: 2397769, 11: 2397797, 5953: 2424643, 5954: 2433687, 5957: 2433743, 5959: 2434093}
[2025-07-28 00:44:44] 2025-07-28 00:44:12,633 | INFO     | --------------------------------------------------
[2025-07-28 00:44:44] 2025-07-28 00:44:12,633 | INFO     | 
[2025-07-28 00:44:44] 2025-07-28 00:44:12,633 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | job 6745891080 has completed (purged errors)
[2025-07-28 00:44:44] 2025-07-28 00:44:12,650 | INFO     | overall cleanup function is called
[2025-07-28 00:44:44] 2025-07-28 00:44:12,714 | INFO     | number of running child processes to parent process 2019470: 1
[2025-07-28 00:44:44] 2025-07-28 00:44:12,714 | INFO     | maximum number of monitored processes: 6
[2025-07-28 00:44:44] 2025-07-28 00:44:12,714 | INFO     | aborting job monitoring since job object (job id=6745891080) has expired
[2025-07-28 00:44:44] 2025-07-28 00:44:13,670 | INFO     | --- collectZombieJob: --- 10, [2019470]
[2025-07-28 00:44:44] 2025-07-28 00:44:13,670 | INFO     | zombie collector waiting for pid 2019470
[2025-07-28 00:44:44] 2025-07-28 00:44:13,670 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:44:44] 2025-07-28 00:44:13,671 | INFO     | collected zombie processes
[2025-07-28 00:44:44] 2025-07-28 00:44:13,671 | INFO     | will attempt to kill all subprocesses of pid=2019470
[2025-07-28 00:44:44] 2025-07-28 00:44:13,765 | INFO     | process IDs to be killed: [2019470] (in reverse order)
[2025-07-28 00:44:44] 2025-07-28 00:44:13,794 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:44:44] 2025-07-28 00:44:13,794 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:44:44] 2025-07-28 00:44:13,796 | INFO     | did not find any defunct processes belonging to 2019470
[2025-07-28 00:44:44] 2025-07-28 00:44:13,798 | INFO     | did not find any defunct processes belonging to 2019470
[2025-07-28 00:44:44] 2025-07-28 00:44:13,798 | INFO     | ready for new job
[2025-07-28 00:44:44] 2025-07-28 00:44:13,798 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:44:44] 2025-07-28 00:44:13,799 | INFO     | ***************************************
[2025-07-28 00:44:44] 2025-07-28 00:44:13,799 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:44:44] 2025-07-28 00:44:13,799 | INFO     | ***************************************
[2025-07-28 00:44:44] 2025-07-28 00:44:13,799 | INFO     | 
[2025-07-28 00:44:44] 2025-07-28 00:44:13,822 | INFO     | architecture information:
[2025-07-28 00:44:44] 2025-07-28 00:44:13,823 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:44:44] 2025-07-28 00:44:13,829 | INFO     | cat /etc/os-release:
[2025-07-28 00:44:44] NAME="CentOS Linux"
[2025-07-28 00:44:44] VERSION="7 (Core)"
[2025-07-28 00:44:44] ID="centos"
[2025-07-28 00:44:44] ID_LIKE="rhel fedora"
[2025-07-28 00:44:44] VERSION_ID="7"
[2025-07-28 00:44:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:44:44] ANSI_COLOR="0;31"
[2025-07-28 00:44:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:44:44] HOME_URL="https://www.centos.org/"
[2025-07-28 00:44:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:44:44] 
[2025-07-28 00:44:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:44:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:44:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:44:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:44:44] 
[2025-07-28 00:44:44] 2025-07-28 00:44:13,829 | INFO     | ***************************************
[2025-07-28 00:44:44] 2025-07-28 00:44:14,330 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-07-28 00:44:44] 2025-07-28 00:44:14,339 | INFO     | sufficient remaining disk space (150364749824 B)
[2025-07-28 00:44:44] 2025-07-28 00:44:14,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:44:44] 2025-07-28 00:44:14,339 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:44:44] 2025-07-28 00:44:14,339 | INFO     | update_server=False
[2025-07-28 00:44:44] 2025-07-28 00:44:14,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:44:44] 2025-07-28 00:44:14,340 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:44:44] 2025-07-28 00:44:14,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:44:44] 2025-07-28 00:44:14,340 | INFO     | aborting loop
[2025-07-28 00:44:44] 2025-07-28 00:44:14,395 | INFO     | all data control threads have been joined
[2025-07-28 00:44:44] 2025-07-28 00:44:14,530 | INFO     | all job control threads have been joined
[2025-07-28 00:44:44] 2025-07-28 00:44:14,726 | INFO     | all payload control threads have been joined
[2025-07-28 00:44:44] 2025-07-28 00:44:14,897 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:44:44] 2025-07-28 00:44:15,342 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:15,342 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:15,345 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:15,400 | INFO     | [data] control thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:15,426 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:15,454 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:15,534 | INFO     | [job] control thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:15,739 | INFO     | [payload] control thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:15,906 | INFO     | [job] validate thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:16,058 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:16,161 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:44:44] 2025-07-28 00:44:16,351 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:16,382 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:16,786 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:16,822 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:16,902 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:20,166 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:44:44] 2025-07-28 00:44:20,566 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140682352711488)>', '<ExcThread(monitor, started 140681251124992)>']
[2025-07-28 00:44:44] 2025-07-28 00:44:25,590 | INFO     | all workflow threads have been joined
[2025-07-28 00:44:44] 2025-07-28 00:44:25,590 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:44:44] 2025-07-28 00:44:25,590 | INFO     | traces error code: 0
[2025-07-28 00:44:44] 2025-07-28 00:44:25,590 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:44:44] 2025-07-28 00:44:44,548 | INFO     | PID=2012888 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:44:44] 2025-07-28 00:44:44,548 | INFO     | .. there are 3 such processes running
[2025-07-28 00:44:44] 2025-07-28 00:44:44,548 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:44:44] 2025-07-28 00:44:44,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:44:44] 2025-07-28 00:44:44,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:44:44] 2025-07-28 00:44:44,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:44:44] 2025-07-28 00:44:44,549 | INFO     | [monitor] control thread has ended
[2025-07-28 00:44:44] 2025-07-28 00:44:44,601 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:44:44] 2025-07-28 00:44:44,602 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:44:44] 2025-07-28 00:44:44,604 [wrapper] pilotpid: 2012888
[2025-07-28 00:44:44] 2025-07-28 00:44:44,606 [wrapper] Pilot exit status: 0
[2025-07-28 00:44:44] 2025-07-28 00:44:44,612 [wrapper] pandaids: 6745891080
[2025-07-28 00:44:44] 2025-07-28 00:44:44,630 [wrapper] cleanup supervisor_pilot 2048270 2012889
[2025-07-28 00:44:44] 2025-07-28 00:44:44,631 [wrapper] Test setup, not cleaning
[2025-07-28 00:44:44] 2025-07-28 00:44:44,633 [wrapper] apfmon messages muted
[2025-07-28 00:44:44] 2025-07-28 00:44:44,635 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:44:44] 2025-07-28 00:44:44,636 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:44:44]  *** Error codes and diagnostics ***
[2025-07-28 00:44:44]     "exeErrorCode": 0,
[2025-07-28 00:44:44]     "exeErrorDiag": "",
[2025-07-28 00:44:44]     "pilotErrorCode": 0,
[2025-07-28 00:44:44]     "pilotErrorDiag": "",
[2025-07-28 00:44:44]  *** Listing of results directory ***
[2025-07-28 00:44:44] total 402744
[2025-07-28 00:44:44] -rw-r--r-- 1 boinc boinc    530466 Jul 26 23:07 pilot3.tar.gz
[2025-07-28 00:44:44] -rw-r--r-- 1 boinc boinc      5112 Jul 26 23:21 queuedata.json
[2025-07-28 00:44:44] -rwx------ 1 boinc boinc     36292 Jul 26 23:22 runpilot2-wrapper.sh
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc       100 Jul 27 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:44:44] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 23:04 run_atlas
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc       105 Jul 27 23:04 job.xml
[2025-07-28 00:44:44] -rw-r--r-- 2 boinc boinc     15095 Jul 27 23:04 start_atlas.sh
[2025-07-28 00:44:44] drwxrwx--x 2 boinc boinc      4096 Jul 27 23:04 shared
[2025-07-28 00:44:44] -rw-r--r-- 2 boinc boinc    542894 Jul 27 23:04 input.tar.gz
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc      9702 Jul 27 23:04 init_data.xml
[2025-07-28 00:44:44] -rw-r--r-- 2 boinc boinc 237208259 Jul 27 23:04 EVNT.45758406._000003.pool.root.1
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc         0 Jul 27 23:04 boinc_lockfile
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc      2577 Jul 27 23:04 pandaJob.out
[2025-07-28 00:44:44] -rw------- 1 boinc boinc    980109 Jul 27 23:04 agis_schedconf.cvmfs.json
[2025-07-28 00:44:44] -rw------- 1 boinc boinc   1593052 Jul 27 23:04 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:44:44] drwx------ 4 boinc boinc      4096 Jul 27 23:04 pilot3
[2025-07-28 00:44:44] -rw------- 1 boinc boinc 169354021 Jul 28 00:43 HITS.45758408._000067.pool.root.1
[2025-07-28 00:44:44] -rw------- 1 boinc boinc        95 Jul 28 00:44 pilot_heartbeat.json
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc       530 Jul 28 00:44 boinc_task_state.xml
[2025-07-28 00:44:44] -rw------- 1 boinc boinc      1018 Jul 28 00:44 memory_monitor_summary.json
[2025-07-28 00:44:44] -rw------- 1 boinc boinc    383173 Jul 28 00:44 log.45758408._000067.job.log.tgz.1
[2025-07-28 00:44:44] -rw------- 1 boinc boinc      7721 Jul 28 00:44 heartbeat.json
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc        27 Jul 28 00:44 wrapper_checkpoint.txt
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc      8192 Jul 28 00:44 boinc_mmap_file
[2025-07-28 00:44:44] -rw------- 1 boinc boinc       822 Jul 28 00:44 pilotlog.txt
[2025-07-28 00:44:44] -rw------- 1 boinc boinc    596971 Jul 28 00:44 log.45758408._000067.job.log.1
[2025-07-28 00:44:44] -rw------- 1 boinc boinc       357 Jul 28 00:44 output.list
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc       620 Jul 28 00:44 runtime_log
[2025-07-28 00:44:44] -rw------- 1 boinc boinc   1003520 Jul 28 00:44 result.tar.gz
[2025-07-28 00:44:44] -rw------- 1 boinc boinc       648 Jul 28 00:44 x2JKDmhO3z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYTTLDmn0SVJn.diag
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc      8954 Jul 28 00:44 runtime_log.err
[2025-07-28 00:44:44] -rw-rw-r-- 1 boinc boinc     22432 Jul 28 00:44 stderr.txt
[2025-07-28 00:44:44] HITS file was successfully produced:
[2025-07-28 00:44:44] -rw------- 1 boinc boinc 169354021 Jul 28 00:43 shared/HITS.pool.root.1
[2025-07-28 00:44:44]  *** Contents of shared directory: ***
[2025-07-28 00:44:44] total 398576
[2025-07-28 00:44:44] -rw-r--r-- 2 boinc boinc     15095 Jul 27 23:04 start_atlas.sh
[2025-07-28 00:44:44] -rw-r--r-- 2 boinc boinc    542894 Jul 27 23:04 input.tar.gz
[2025-07-28 00:44:44] -rw-r--r-- 2 boinc boinc 237208259 Jul 27 23:04 ATLAS.root_0
[2025-07-28 00:44:44] -rw------- 1 boinc boinc 169354021 Jul 28 00:43 HITS.pool.root.1
[2025-07-28 00:44:44] -rw------- 1 boinc boinc   1003520 Jul 28 00:44 result.tar.gz
00:44:46 (2009202): run_atlas exited; CPU time 32249.850497
00:44:46 (2009202): called boinc_finish(0)

</stderr_txt>
]]>

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