Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:00:23 (1990133): wrapper (7.7.26015): starting
23:00:23 (1990133): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 23:00:23] Arguments: --nthreads 12
[2025-07-27 23:00:23] Threads: 12
[2025-07-27 23:00:23] Checking for CVMFS
[2025-07-27 23:00:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:00:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:00:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:00:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:00:23] 2.13.1.0 50093 8264 76136 148827 1 187 3485660 4096001 1753 130560 0 16624159 99.996 301953 287 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-27 23:00:23] CVMFS is ok
[2025-07-27 23:00:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:00:23] Checking for apptainer binary...
[2025-07-27 23:00:23] apptainer is not installed, using version from CVMFS
[2025-07-27 23:00:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:00:23] ryzen7
[2025-07-27 23:00:23] apptainer works
[2025-07-27 23:00:23] Set ATHENA_PROC_NUMBER=12
[2025-07-27 23:00:23] Set ATHENA_CORE_NUMBER=12
[2025-07-27 23:00:23] Starting ATLAS job with PandaID=6745867324
[2025-07-27 23:00:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:39:58]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:39:58]  mtime=0
[2025-07-28 00:39:58]  protocol_id=None
[2025-07-28 00:39:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:39:58]  replicas=None
[2025-07-28 00:39:58]  scope=mc23_13p6TeV
[2025-07-28 00:39:58]  status=None
[2025-07-28 00:39:58]  status_code=0
[2025-07-28 00:39:58]  storage_token=
[2025-07-28 00:39:58]  surl=/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745867324/log.45758797._000108.job.log.tgz.1
[2025-07-28 00:39:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f3/3c/log.45758797._000108.job.log.tgz.1
[2025-07-28 00:39:58]  workdir=None
[2025-07-28 00:39:58] ]
[2025-07-28 00:39:58] 2025-07-28 00:39:22,423 | INFO     | transferring file log.45758797._000108.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745867324/log.45758797._000108.job.log.tgz.1 t
[2025-07-28 00:39:58] 2025-07-28 00:39:22,423 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745867324/log.45758797._000108.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-28 00:39:58] 2025-07-28 00:39:22,434 | INFO     | adding to output.list: log.45758797._000108.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f3/3c/log.45758797._000108.job.log.tg
[2025-07-28 00:39:58] 2025-07-28 00:39:22,434 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:39:58] 2025-07-28 00:39:22,434 | INFO     | summary of transferred files:
[2025-07-28 00:39:58] 2025-07-28 00:39:22,434 | INFO     |  -- lfn=log.45758797._000108.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:39:58] 2025-07-28 00:39:22,435 | INFO     | stage-out finished correctly
[2025-07-28 00:39:58] 2025-07-28 00:39:22,563 | INFO     | PID=1993820 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:39:58] 2025-07-28 00:39:22,564 | INFO     | .. there are 3 such processes running
[2025-07-28 00:39:58] 2025-07-28 00:39:23,297 | INFO     | monitor loop #437: job 0:6745867324 is in state 'finished'
[2025-07-28 00:39:58] 2025-07-28 00:39:23,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:39:58] 2025-07-28 00:39:23,590 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:39:58] 2025-07-28 00:39:23,651 | INFO     | job 6745867324 has state=finished
[2025-07-28 00:39:58] 2025-07-28 00:39:23,651 | INFO     | preparing for final server update for job 6745867324 in state='finished'
[2025-07-28 00:39:58] 2025-07-28 00:39:23,652 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:39:58] 2025-07-28 00:39:23,652 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:39:58] 2025-07-28 00:39:23,652 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:39:58] 2025-07-28 00:39:23,652 | INFO     | job 6745867324 has finished - writing final server update
[2025-07-28 00:39:58] 2025-07-28 00:39:23,652 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:39:58] 2025-07-28 00:39:23,653 | INFO     | executing command: lscpu
[2025-07-28 00:39:58] 2025-07-28 00:39:23,686 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:39:58] 2025-07-28 00:39:25,736 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 00:39:58] 2025-07-28 00:39:25,738 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4058.4945624999996
[2025-07-28 00:39:58] 2025-07-28 00:39:25,741 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745867324/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:39:58] 2025-07-28 00:39:25,741 | INFO     | extracted standard info from prmon json
[2025-07-28 00:39:58] 2025-07-28 00:39:25,741 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:39:58] 2025-07-28 00:39:25,741 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:39:58] 2025-07-28 00:39:25,742 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:39:58] 2025-07-28 00:39:25,742 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:39:58] 2025-07-28 00:39:25,743 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:39:58] 2025-07-28 00:39:25,743 | INFO     | sum of square deviations: 226022842.5
[2025-07-28 00:39:58] 2025-07-28 00:39:25,743 | INFO     | sum of deviations: -1483184408.5
[2025-07-28 00:39:58] 2025-07-28 00:39:25,743 | INFO     | mean x: 1753660268.5
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | mean y: 2710945.1222222224
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | -- intersect: 11510404323.702415
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | intersect: 11510404323.702415
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | chi2: 0.015733233142013497
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | -- intersect: 11510404323.702415
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | current memory leak: -6.56 B/s (using 90 data points, chi2=0.02)
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | could have reported an average CPU frequency of 4129 MHz (7 samples)
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | ..............................
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | . Timing measurements:
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | . get job = 0 s
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | . initial setup = 1 s
[2025-07-28 00:39:58] 2025-07-28 00:39:25,744 | INFO     | . payload setup = 3 s
[2025-07-28 00:39:58] 2025-07-28 00:39:25,745 | INFO     | . stage-in = 0 s
[2025-07-28 00:39:58] 2025-07-28 00:39:25,745 | INFO     | . payload execution = 5912 s
[2025-07-28 00:39:58] 2025-07-28 00:39:25,745 | INFO     | . stage-out = 0 s
[2025-07-28 00:39:58] 2025-07-28 00:39:25,745 | INFO     | . log creation = 0 s
[2025-07-28 00:39:58] 2025-07-28 00:39:25,745 | INFO     | ..............................
[2025-07-28 00:39:58] 2025-07-28 00:39:26,182 | INFO     | 
[2025-07-28 00:39:58] 2025-07-28 00:39:26,182 | INFO     | job summary report
[2025-07-28 00:39:58] 2025-07-28 00:39:26,182 | INFO     | --------------------------------------------------
[2025-07-28 00:39:58] 2025-07-28 00:39:26,182 | INFO     | PanDA job id: 6745867324
[2025-07-28 00:39:58] 2025-07-28 00:39:26,182 | INFO     | task id: 45758797
[2025-07-28 00:39:58] 2025-07-28 00:39:26,182 | INFO     | errors: (none)
[2025-07-28 00:39:58] 2025-07-28 00:39:26,182 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | pilot state: finished 
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | transexitcode: 0
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | exeerrorcode: 0
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | exeerrordiag: 
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | exitcode: 0
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | exitmsg: OK
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | cpuconsumptiontime: 31567 s
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | nevents: 400
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | neventsw: 0
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | pid: 2000400
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | pgrp: 2000400
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | corecount: 12
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | event service: False
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | sizes: {0: 2397503, 2: 2397765, 11: 2397793, 5920: 2433685, 5921: 2433685, 5923: 2433879}
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | --------------------------------------------------
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | 
[2025-07-28 00:39:58] 2025-07-28 00:39:26,183 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-28 00:39:58] 2025-07-28 00:39:26,195 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,195 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,195 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,195 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,195 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,196 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:39:58] 2025-07-28 00:39:26,197 | INFO     | job 6745867324 has completed (purged errors)
[2025-07-28 00:39:58] 2025-07-28 00:39:26,197 | INFO     | overall cleanup function is called
[2025-07-28 00:39:58] 2025-07-28 00:39:27,202 | INFO     | --- collectZombieJob: --- 10, [2000400]
[2025-07-28 00:39:58] 2025-07-28 00:39:27,202 | INFO     | zombie collector waiting for pid 2000400
[2025-07-28 00:39:58] 2025-07-28 00:39:27,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:39:58] 2025-07-28 00:39:27,203 | INFO     | collected zombie processes
[2025-07-28 00:39:58] 2025-07-28 00:39:27,203 | INFO     | will attempt to kill all subprocesses of pid=2000400
[2025-07-28 00:39:58] 2025-07-28 00:39:27,272 | INFO     | process IDs to be killed: [2000400] (in reverse order)
[2025-07-28 00:39:58] 2025-07-28 00:39:27,301 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:39:58] 2025-07-28 00:39:27,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:39:58] 2025-07-28 00:39:27,303 | INFO     | did not find any defunct processes belonging to 2000400
[2025-07-28 00:39:58] 2025-07-28 00:39:27,304 | INFO     | did not find any defunct processes belonging to 2000400
[2025-07-28 00:39:58] 2025-07-28 00:39:27,305 | INFO     | ready for new job
[2025-07-28 00:39:58] 2025-07-28 00:39:27,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:39:58] 2025-07-28 00:39:27,306 | INFO     | ***************************************
[2025-07-28 00:39:58] 2025-07-28 00:39:27,306 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:39:58] 2025-07-28 00:39:27,306 | INFO     | ***************************************
[2025-07-28 00:39:58] 2025-07-28 00:39:27,306 | INFO     | 
[2025-07-28 00:39:58] 2025-07-28 00:39:27,327 | INFO     | architecture information:
[2025-07-28 00:39:58] 2025-07-28 00:39:27,327 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:39:58] 2025-07-28 00:39:27,334 | INFO     | cat /etc/os-release:
[2025-07-28 00:39:58] NAME="CentOS Linux"
[2025-07-28 00:39:58] VERSION="7 (Core)"
[2025-07-28 00:39:58] ID="centos"
[2025-07-28 00:39:58] ID_LIKE="rhel fedora"
[2025-07-28 00:39:58] VERSION_ID="7"
[2025-07-28 00:39:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:39:58] ANSI_COLOR="0;31"
[2025-07-28 00:39:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:39:58] HOME_URL="https://www.centos.org/"
[2025-07-28 00:39:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:39:58] 
[2025-07-28 00:39:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:39:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:39:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:39:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:39:58] 
[2025-07-28 00:39:58] 2025-07-28 00:39:27,334 | INFO     | ***************************************
[2025-07-28 00:39:58] 2025-07-28 00:39:27,837 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-28 00:39:58] 2025-07-28 00:39:27,845 | INFO     | sufficient remaining disk space (150112043008 B)
[2025-07-28 00:39:58] 2025-07-28 00:39:27,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:39:58] 2025-07-28 00:39:27,845 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:39:58] 2025-07-28 00:39:27,845 | INFO     | update_server=False
[2025-07-28 00:39:58] 2025-07-28 00:39:27,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:39:58] 2025-07-28 00:39:27,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:39:58] 2025-07-28 00:39:28,209 | INFO     | all data control threads have been joined
[2025-07-28 00:39:58] 2025-07-28 00:39:28,306 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 00:39:58] 2025-07-28 00:39:28,306 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 00:39:58] 2025-07-28 00:39:28,306 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:39:58] 2025-07-28 00:39:28,306 | INFO     | will abort loop
[2025-07-28 00:39:58] 2025-07-28 00:39:28,376 | INFO     | all job control threads have been joined
[2025-07-28 00:39:58] 2025-07-28 00:39:28,445 | INFO     | all payload control threads have been joined
[2025-07-28 00:39:58] 2025-07-28 00:39:28,850 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:28,942 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:29,086 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:29,214 | INFO     | [data] control thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:29,310 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:29,378 | INFO     | [job] control thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:29,402 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:29,450 | INFO     | [payload] control thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:29,655 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:39:58] 2025-07-28 00:39:29,810 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:29,874 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:30,002 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:30,158 | INFO     | [job] validate thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:30,198 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:30,818 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:39:58] 2025-07-28 00:39:31,826 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:33,658 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:38,498 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:39:58] 2025-07-28 00:39:39,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:39:58] 2025-07-28 00:39:39,930 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139673481549632)>', '<ExcThread(monitor, started 139673024304896)>']
[2025-07-28 00:39:58] 2025-07-28 00:39:44,955 | INFO     | all workflow threads have been joined
[2025-07-28 00:39:58] 2025-07-28 00:39:44,955 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:39:58] 2025-07-28 00:39:44,955 | INFO     | traces error code: 0
[2025-07-28 00:39:58] 2025-07-28 00:39:44,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:39:58] 2025-07-28 00:39:58,713 | INFO     | PID=1993820 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:39:58] 2025-07-28 00:39:58,713 | INFO     | .. there are 3 such processes running
[2025-07-28 00:39:58] 2025-07-28 00:39:58,713 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:39:58] 2025-07-28 00:39:58,713 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:39:58] 2025-07-28 00:39:58,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:39:58] 2025-07-28 00:39:58,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:39:58] 2025-07-28 00:39:58,714 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 00:39:58] 2025-07-28 00:39:58,714 | INFO     | [monitor] control thread has ended
[2025-07-28 00:39:58] 2025-07-28 00:39:58,763 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:39:58] 2025-07-28 00:39:58,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:39:58] 2025-07-28 00:39:58,766 [wrapper] pilotpid: 1993820
[2025-07-28 00:39:58] 2025-07-28 00:39:58,768 [wrapper] Pilot exit status: 0
[2025-07-28 00:39:58] 2025-07-28 00:39:58,774 [wrapper] pandaids: 6745867324
[2025-07-28 00:39:58] 2025-07-28 00:39:58,793 [wrapper] cleanup supervisor_pilot 2040919 1993821
[2025-07-28 00:39:58] 2025-07-28 00:39:58,794 [wrapper] Test setup, not cleaning
[2025-07-28 00:39:58] 2025-07-28 00:39:58,796 [wrapper] apfmon messages muted
[2025-07-28 00:39:58] 2025-07-28 00:39:58,797 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:39:58] 2025-07-28 00:39:58,799 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:39:58]  *** Error codes and diagnostics ***
[2025-07-28 00:39:58]     "exeErrorCode": 0,
[2025-07-28 00:39:58]     "exeErrorDiag": "",
[2025-07-28 00:39:58]     "pilotErrorCode": 0,
[2025-07-28 00:39:58]     "pilotErrorDiag": "",
[2025-07-28 00:39:58]  *** Listing of results directory ***
[2025-07-28 00:39:58] total 416104
[2025-07-28 00:39:58] -rw-r--r-- 1 boinc boinc    530466 Jul 26 23:07 pilot3.tar.gz
[2025-07-28 00:39:58] -rw-r--r-- 1 boinc boinc      5112 Jul 26 23:18 queuedata.json
[2025-07-28 00:39:58] -rwx------ 1 boinc boinc     36292 Jul 26 23:19 runpilot2-wrapper.sh
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc       100 Jul 27 23:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:39:58] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 23:00 run_atlas
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc       105 Jul 27 23:00 job.xml
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc      9702 Jul 27 23:00 init_data.xml
[2025-07-28 00:39:58] -rw-r--r-- 2 boinc boinc 242256756 Jul 27 23:00 EVNT.45758795._000005.pool.root.1
[2025-07-28 00:39:58] -rw-r--r-- 2 boinc boinc     15095 Jul 27 23:00 start_atlas.sh
[2025-07-28 00:39:58] drwxrwx--x 2 boinc boinc      4096 Jul 27 23:00 shared
[2025-07-28 00:39:58] -rw-r--r-- 2 boinc boinc    542895 Jul 27 23:00 input.tar.gz
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc         0 Jul 27 23:00 boinc_lockfile
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc      2571 Jul 27 23:00 pandaJob.out
[2025-07-28 00:39:58] -rw------- 1 boinc boinc    980109 Jul 27 23:00 agis_schedconf.cvmfs.json
[2025-07-28 00:39:58] -rw------- 1 boinc boinc   1593052 Jul 27 23:00 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:39:58] drwx------ 4 boinc boinc      4096 Jul 27 23:00 pilot3
[2025-07-28 00:39:58] -rw------- 1 boinc boinc 178027748 Jul 28 00:39 HITS.45758797._000108.pool.root.1
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc       530 Jul 28 00:39 boinc_task_state.xml
[2025-07-28 00:39:58] -rw------- 1 boinc boinc      1018 Jul 28 00:39 memory_monitor_summary.json
[2025-07-28 00:39:58] -rw------- 1 boinc boinc    369252 Jul 28 00:39 log.45758797._000108.job.log.tgz.1
[2025-07-28 00:39:58] -rw------- 1 boinc boinc      7723 Jul 28 00:39 heartbeat.json
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc      8192 Jul 28 00:39 boinc_mmap_file
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc        27 Jul 28 00:39 wrapper_checkpoint.txt
[2025-07-28 00:39:58] -rw------- 1 boinc boinc       892 Jul 28 00:39 pilotlog.txt
[2025-07-28 00:39:58] -rw------- 1 boinc boinc        95 Jul 28 00:39 pilot_heartbeat.json
[2025-07-28 00:39:58] -rw------- 1 boinc boinc    593174 Jul 28 00:39 log.45758797._000108.job.log.1
[2025-07-28 00:39:58] -rw------- 1 boinc boinc       357 Jul 28 00:39 output.list
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc       620 Jul 28 00:39 runtime_log
[2025-07-28 00:39:58] -rw------- 1 boinc boinc    983040 Jul 28 00:39 result.tar.gz
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc      8954 Jul 28 00:39 runtime_log.err
[2025-07-28 00:39:58] -rw------- 1 boinc boinc       648 Jul 28 00:39 E1BODmqL3z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1STLDmTWMWom.diag
[2025-07-28 00:39:58] -rw-rw-r-- 1 boinc boinc     21517 Jul 28 00:39 stderr.txt
[2025-07-28 00:39:58] HITS file was successfully produced:
[2025-07-28 00:39:58] -rw------- 1 boinc boinc 178027748 Jul 28 00:39 shared/HITS.pool.root.1
[2025-07-28 00:39:58]  *** Contents of shared directory: ***
[2025-07-28 00:39:58] total 411952
[2025-07-28 00:39:58] -rw-r--r-- 2 boinc boinc 242256756 Jul 27 23:00 ATLAS.root_0
[2025-07-28 00:39:58] -rw-r--r-- 2 boinc boinc     15095 Jul 27 23:00 start_atlas.sh
[2025-07-28 00:39:58] -rw-r--r-- 2 boinc boinc    542895 Jul 27 23:00 input.tar.gz
[2025-07-28 00:39:58] -rw------- 1 boinc boinc 178027748 Jul 28 00:39 HITS.pool.root.1
[2025-07-28 00:39:58] -rw------- 1 boinc boinc    983040 Jul 28 00:39 result.tar.gz
00:40:00 (1990133): run_atlas exited; CPU time 31592.554240
00:40:00 (1990133): called boinc_finish(0)

</stderr_txt>
]]>

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