Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:34:08 (1052840): wrapper (7.7.26015): starting
01:34:08 (1052840): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 01:34:08] Arguments: --nthreads 12
[2025-07-27 01:34:08] Threads: 12
[2025-07-27 01:34:08] Checking for CVMFS
[2025-07-27 01:34:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 01:34:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 01:34:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 01:34:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 01:34:08] 2.13.0.0 1190652 17950 325432 148801 1 105 30485248 32935936 7064 16776704 0 32848618 99.725 57183938 29266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 01:34:08] CVMFS is ok
[2025-07-27 01:34:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 01:34:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 01:34:08] Further information can be found at the LHC@home message board.
[2025-07-27 01:34:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 01:34:08] Checking for apptainer binary...
[2025-07-27 01:34:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 01:34:08] Running /usr/bin/apptainer --version
[2025-07-27 01:34:08] apptainer version 1.4.1-1.el9
[2025-07-27 01:34:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 01:34:08] c6-1-26-3.aglt2.org
[2025-07-27 01:34:08] apptainer works
[2025-07-27 01:34:08] Set ATHENA_PROC_NUMBER=12
[2025-07-27 01:34:08] Set ATHENA_CORE_NUMBER=12
[2025-07-27 01:34:08] Starting ATLAS job with PandaID=6745867283
[2025-07-27 01:34:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 02:56:22]  *** The last 200 lines of the pilot log: ***
[2025-07-27 02:56:22]  protocol_id=None
[2025-07-27 02:56:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 02:56:22]  replicas=None
[2025-07-27 02:56:22]  scope=mc23_13p6TeV
[2025-07-27 02:56:22]  status=None
[2025-07-27 02:56:22]  status_code=0
[2025-07-27 02:56:22]  storage_token=
[2025-07-27 02:56:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745867283/log.45758797._000067.job.log.tgz.1
[2025-07-27 02:56:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/fd/log.45758797._000067.job.log.tgz.1
[2025-07-27 02:56:22]  workdir=None
[2025-07-27 02:56:22] ]
[2025-07-27 02:56:22] 2025-07-27 06:55:41,383 | INFO     | transferring file log.45758797._000067.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745867283/log.45758797._000067.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 02:56:22] 2025-07-27 06:55:41,383 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745867283/log.45758797._000067.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758797._000067.job
[2025-07-27 02:56:22] 2025-07-27 06:55:41,405 | INFO     | adding to output.list: log.45758797._000067.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/fd/log.45758797._000067.job.log.tg
[2025-07-27 02:56:22] 2025-07-27 06:55:41,407 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 02:56:22] 2025-07-27 06:55:41,407 | INFO     | summary of transferred files:
[2025-07-27 02:56:22] 2025-07-27 06:55:41,407 | INFO     |  -- lfn=log.45758797._000067.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 02:56:22] 2025-07-27 06:55:41,407 | INFO     | stage-out finished correctly
[2025-07-27 02:56:22] 2025-07-27 06:55:42,848 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 02:56:22] 2025-07-27 06:55:43,456 | INFO     | monitor loop #362: job 0:6745867283 is in state 'finished'
[2025-07-27 02:56:22] 2025-07-27 06:55:43,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 02:56:22] 2025-07-27 06:55:45,316 | INFO     | job 6745867283 has state=finished
[2025-07-27 02:56:22] 2025-07-27 06:55:45,317 | INFO     | preparing for final server update for job 6745867283 in state='finished'
[2025-07-27 02:56:22] 2025-07-27 06:55:45,317 | INFO     | this job has now completed (state=finished)
[2025-07-27 02:56:22] 2025-07-27 06:55:45,317 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 02:56:22] 2025-07-27 06:55:45,317 | INFO     | log transfer has been attempted: DONE
[2025-07-27 02:56:22] 2025-07-27 06:55:45,318 | INFO     | job 6745867283 has finished - writing final server update
[2025-07-27 02:56:22] 2025-07-27 06:55:45,318 | INFO     | total number of processed events: 400 (read)
[2025-07-27 02:56:22] 2025-07-27 06:55:45,320 | INFO     | executing command: lscpu
[2025-07-27 02:56:22] 2025-07-27 06:55:45,370 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 02:56:22] 2025-07-27 06:55:45,792 | INFO     | PID=1056460 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 02:56:22] 2025-07-27 06:55:45,792 | INFO     | .. there are 11 such processes running
[2025-07-27 02:56:22] 2025-07-27 06:55:45,960 | INFO     | monitor loop #363: job 0:6745867283 is in state 'finished'
[2025-07-27 02:56:22] 2025-07-27 06:55:45,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 02:56:22] 2025-07-27 06:55:48,463 | INFO     | monitor loop #364: job 0:6745867283 is in state 'finished'
[2025-07-27 02:56:22] 2025-07-27 06:55:48,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 02:56:22] 2025-07-27 06:55:50,658 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 02:56:22] 2025-07-27 06:55:50,675 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2763.9871428571437
[2025-07-27 02:56:22] 2025-07-27 06:55:50,683 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745867283/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 02:56:22] 2025-07-27 06:55:50,684 | INFO     | extracted standard info from prmon json
[2025-07-27 02:56:22] 2025-07-27 06:55:50,685 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 02:56:22] 2025-07-27 06:55:50,685 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 02:56:22] 2025-07-27 06:55:50,685 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 02:56:22] 2025-07-27 06:55:50,685 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | fitting pss+swap vs Time
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | sum of square deviations: 120605052.0
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | sum of deviations: -13039192677.0
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | mean x: 1753596991.0
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | mean y: 2565201.178082192
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | -- intersect: 189592376442.7207
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | intersect: 189592376442.7207
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | chi2: 0.22458240943051191
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | -- intersect: 189592376442.7207
[2025-07-27 02:56:22] 2025-07-27 06:55:50,687 | INFO     | current memory leak: -108.11 B/s (using 73 data points, chi2=0.22)
[2025-07-27 02:56:22] 2025-07-27 06:55:50,688 | INFO     | could have reported an average CPU frequency of 2742 MHz (6 samples)
[2025-07-27 02:56:22] 2025-07-27 06:55:50,688 | INFO     | ..............................
[2025-07-27 02:56:22] 2025-07-27 06:55:50,688 | INFO     | . Timing measurements:
[2025-07-27 02:56:22] 2025-07-27 06:55:50,688 | INFO     | . get job = 0 s
[2025-07-27 02:56:22] 2025-07-27 06:55:50,688 | INFO     | . initial setup = 4 s
[2025-07-27 02:56:22] 2025-07-27 06:55:50,688 | INFO     | . payload setup = 7 s
[2025-07-27 02:56:22] 2025-07-27 06:55:50,688 | INFO     | . stage-in = 0 s
[2025-07-27 02:56:22] 2025-07-27 06:55:50,688 | INFO     | . payload execution = 4852 s
[2025-07-27 02:56:22] 2025-07-27 06:55:50,688 | INFO     | . stage-out = 0 s
[2025-07-27 02:56:22] 2025-07-27 06:55:50,689 | INFO     | . log creation = 0 s
[2025-07-27 02:56:22] 2025-07-27 06:55:50,689 | INFO     | ..............................
[2025-07-27 02:56:22] 2025-07-27 06:55:50,768 | INFO     | 
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | job summary report
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | --------------------------------------------------
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | PanDA job id: 6745867283
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | task id: 45758797
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | errors: (none)
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | pilot state: finished 
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | transexitcode: 0
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | exeerrorcode: 0
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | exeerrordiag: 
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | exitcode: 0
[2025-07-27 02:56:22] 2025-07-27 06:55:50,769 | INFO     | exitmsg: OK
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | cpuconsumptiontime: 51958 s
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | nevents: 400
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | neventsw: 0
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | pid: 1063212
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | pgrp: 1063212
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | corecount: 12
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | event service: False
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | sizes: {0: 2397305, 1: 2397504, 5: 2397766, 11: 2397822, 4863: 2423978, 4864: 2432976, 4865: 2433160, 4873: 2433354}
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | --------------------------------------------------
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | 
[2025-07-27 02:56:22] 2025-07-27 06:55:50,770 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 02:56:22] 2025-07-27 06:55:50,792 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,792 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,792 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,792 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,793 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 02:56:22] 2025-07-27 06:55:50,794 | INFO     | job 6745867283 has completed (purged errors)
[2025-07-27 02:56:22] 2025-07-27 06:55:50,794 | INFO     | overall cleanup function is called
[2025-07-27 02:56:22] 2025-07-27 06:55:51,802 | INFO     | --- collectZombieJob: --- 10, [1063212]
[2025-07-27 02:56:22] 2025-07-27 06:55:51,802 | INFO     | zombie collector waiting for pid 1063212
[2025-07-27 02:56:22] 2025-07-27 06:55:51,802 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 02:56:22] 2025-07-27 06:55:51,802 | INFO     | collected zombie processes
[2025-07-27 02:56:22] 2025-07-27 06:55:51,802 | INFO     | will attempt to kill all subprocesses of pid=1063212
[2025-07-27 02:56:22] 2025-07-27 06:55:52,095 | INFO     | process IDs to be killed: [1063212] (in reverse order)
[2025-07-27 02:56:22] 2025-07-27 06:55:52,197 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 02:56:22] 2025-07-27 06:55:52,198 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 02:56:22] 2025-07-27 06:55:52,210 | INFO     | did not find any defunct processes belonging to 1063212
[2025-07-27 02:56:22] 2025-07-27 06:55:52,221 | INFO     | did not find any defunct processes belonging to 1063212
[2025-07-27 02:56:22] 2025-07-27 06:55:52,221 | INFO     | ready for new job
[2025-07-27 02:56:22] 2025-07-27 06:55:52,222 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 02:56:22] 2025-07-27 06:55:52,223 | INFO     | ***************************************
[2025-07-27 02:56:22] 2025-07-27 06:55:52,223 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 02:56:22] 2025-07-27 06:55:52,223 | INFO     | ***************************************
[2025-07-27 02:56:22] 2025-07-27 06:55:52,223 | INFO     | 
[2025-07-27 02:56:22] 2025-07-27 06:55:52,238 | INFO     | architecture information:
[2025-07-27 02:56:22] 2025-07-27 06:55:52,238 | INFO     | executing command: cat /etc/os-release
[2025-07-27 02:56:22] 2025-07-27 06:55:52,257 | INFO     | cat /etc/os-release:
[2025-07-27 02:56:22] NAME="CentOS Linux"
[2025-07-27 02:56:22] VERSION="7 (Core)"
[2025-07-27 02:56:22] ID="centos"
[2025-07-27 02:56:22] ID_LIKE="rhel fedora"
[2025-07-27 02:56:22] VERSION_ID="7"
[2025-07-27 02:56:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 02:56:22] ANSI_COLOR="0;31"
[2025-07-27 02:56:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 02:56:22] HOME_URL="https://www.centos.org/"
[2025-07-27 02:56:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 02:56:22] 
[2025-07-27 02:56:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 02:56:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 02:56:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 02:56:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 02:56:22] 
[2025-07-27 02:56:22] 2025-07-27 06:55:52,258 | INFO     | ***************************************
[2025-07-27 02:56:22] 2025-07-27 06:55:52,760 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 02:56:22] 2025-07-27 06:55:52,780 | INFO     | sufficient remaining disk space (76269223936 B)
[2025-07-27 02:56:22] 2025-07-27 06:55:52,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 02:56:22] 2025-07-27 06:55:52,781 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 02:56:22] 2025-07-27 06:55:52,781 | INFO     | update_server=False
[2025-07-27 02:56:22] 2025-07-27 06:55:52,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 02:56:22] 2025-07-27 06:55:52,781 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:56:22] 2025-07-27 06:55:52,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 02:56:22] 2025-07-27 06:55:52,782 | INFO     | aborting loop
[2025-07-27 02:56:22] 2025-07-27 06:55:52,876 | INFO     | all payload control threads have been joined
[2025-07-27 02:56:22] 2025-07-27 06:55:53,271 | INFO     | all data control threads have been joined
[2025-07-27 02:56:22] 2025-07-27 06:55:53,441 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 02:56:22] 2025-07-27 06:55:53,786 | INFO     | [job] retrieve thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:53,787 | INFO     | [job] job monitor thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:53,881 | INFO     | [payload] control thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:53,894 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:54,276 | INFO     | [data] control thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:54,381 | INFO     | all job control threads have been joined
[2025-07-27 02:56:22] 2025-07-27 06:55:54,454 | INFO     | [payload] validate_post thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:54,634 | INFO     | [job] validate thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:54,720 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:54,787 | INFO     | [data] copytool_out thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:54,872 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:54,993 | INFO     | [data] copytool_in thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:55,057 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:55,145 | INFO     | [payload] failed_post thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:55,386 | INFO     | [job] control thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:55,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:56:22] 2025-07-27 06:55:56,783 | INFO     | [job] queue monitor thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:57,447 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 02:56:22] 2025-07-27 06:55:58,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140626164094784)>', '<ExcThread(monitor, started 140625533982464)>']
[2025-07-27 02:56:22] 2025-07-27 06:56:03,826 | INFO     | all workflow threads have been joined
[2025-07-27 02:56:22] 2025-07-27 06:56:03,826 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 02:56:22] 2025-07-27 06:56:03,826 | INFO     | traces error code: 0
[2025-07-27 02:56:22] 2025-07-27 06:56:03,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 02:56:22] 2025-07-27 06:56:22,237 | INFO     | PID=1056460 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 02:56:22] 2025-07-27 06:56:22,238 | INFO     | .. there are 11 such processes running
[2025-07-27 02:56:22] 2025-07-27 06:56:22,239 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 02:56:22] 2025-07-27 06:56:22,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 02:56:22] 2025-07-27 06:56:22,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 02:56:22] 2025-07-27 06:56:22,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 02:56:22] 2025-07-27 06:56:22,239 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 02:56:22] 2025-07-27 06:56:22,239 | INFO     | [monitor] control thread has ended
[2025-07-27 02:56:22] 2025-07-27 06:56:22,416 [wrapper] ==== pilot stdout END ====
[2025-07-27 02:56:22] 2025-07-27 06:56:22,420 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 02:56:22] 2025-07-27 06:56:22,423 [wrapper] pilotpid: 1056460
[2025-07-27 02:56:22] 2025-07-27 06:56:22,428 [wrapper] Pilot exit status: 0
[2025-07-27 02:56:22] 2025-07-27 06:56:22,442 [wrapper] pandaids: 6745867283
[2025-07-27 02:56:22] 2025-07-27 06:56:22,530 [wrapper] cleanup supervisor_pilot 1386527 1056461
[2025-07-27 02:56:22] 2025-07-27 06:56:22,533 [wrapper] Test setup, not cleaning
[2025-07-27 02:56:22] 2025-07-27 06:56:22,537 [wrapper] apfmon messages muted
[2025-07-27 02:56:22] 2025-07-27 06:56:22,541 [wrapper] ==== wrapper stdout END ====
[2025-07-27 02:56:22] 2025-07-27 06:56:22,544 [wrapper] ==== wrapper stderr END ====
[2025-07-27 02:56:22]  *** Error codes and diagnostics ***
[2025-07-27 02:56:22]     "exeErrorCode": 0,
[2025-07-27 02:56:22]     "exeErrorDiag": "",
[2025-07-27 02:56:22]     "pilotErrorCode": 0,
[2025-07-27 02:56:22]     "pilotErrorDiag": "",
[2025-07-27 02:56:22]  *** Listing of results directory ***
[2025-07-27 02:56:22] total 415088
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:07 pilot3.tar.gz
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 19:18 queuedata.json
[2025-07-27 02:56:22] -rwx------. 1 boincer umatlas     36292 Jul 26 19:19 runpilot2-wrapper.sh
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas       100 Jul 27 01:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 02:56:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 01:34 run_atlas
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas       105 Jul 27 01:34 job.xml
[2025-07-27 02:56:22] -rw-r--r--. 2 boincer umatlas 242181969 Jul 27 01:34 EVNT.45758795._000003.pool.root.1
[2025-07-27 02:56:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:34 start_atlas.sh
[2025-07-27 02:56:22] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 01:34 shared
[2025-07-27 02:56:22] -rw-r--r--. 2 boincer umatlas    542890 Jul 27 01:34 input.tar.gz
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas         0 Jul 27 01:34 boinc_lockfile
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas      2569 Jul 27 01:34 pandaJob.out
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas    980109 Jul 27 01:34 agis_schedconf.cvmfs.json
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas   1593052 Jul 27 01:34 agis_ddmendpoints.agis.ALL.json
[2025-07-27 02:56:22] drwx------. 4 boincer umatlas      4096 Jul 27 01:34 pilot3
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas 177290523 Jul 27 02:55 HITS.45758797._000067.pool.root.1
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas       529 Jul 27 02:55 boinc_task_state.xml
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas      1036 Jul 27 02:55 memory_monitor_summary.json
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas    372617 Jul 27 02:55 log.45758797._000067.job.log.tgz.1
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 02:55 init_data.xml
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas      7815 Jul 27 02:55 heartbeat.json
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 02:55 boinc_mmap_file
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas        27 Jul 27 02:55 wrapper_checkpoint.txt
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas        95 Jul 27 02:56 pilot_heartbeat.json
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas       893 Jul 27 02:56 pilotlog.txt
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas    481242 Jul 27 02:56 log.45758797._000067.job.log.1
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas       357 Jul 27 02:56 output.list
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas       620 Jul 27 02:56 runtime_log
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas    870400 Jul 27 02:56 result.tar.gz
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 02:56 runtime_log.err
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas       655 Jul 27 02:56 AXCNDmqL3z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOSTLDmZ3F74m.diag
[2025-07-27 02:56:22] -rw-r--r--. 1 boincer umatlas     21900 Jul 27 02:56 stderr.txt
[2025-07-27 02:56:22] HITS file was successfully produced:
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas 177290523 Jul 27 02:55 shared/HITS.pool.root.1
[2025-07-27 02:56:22]  *** Contents of shared directory: ***
[2025-07-27 02:56:22] total 411048
[2025-07-27 02:56:22] -rw-r--r--. 2 boincer umatlas 242181969 Jul 27 01:34 ATLAS.root_0
[2025-07-27 02:56:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:34 start_atlas.sh
[2025-07-27 02:56:22] -rw-r--r--. 2 boincer umatlas    542890 Jul 27 01:34 input.tar.gz
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas 177290523 Jul 27 02:55 HITS.pool.root.1
[2025-07-27 02:56:22] -rw-------. 1 boincer umatlas    870400 Jul 27 02:56 result.tar.gz
02:56:23 (1052840): run_atlas exited; CPU time 52073.187635
02:56:23 (1052840): called boinc_finish(0)

</stderr_txt>
]]>

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