Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:44:13 (3964575): wrapper (7.7.26015): starting
15:44:13 (3964575): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 15:44:13] Arguments: --nthreads 12
[2025-07-27 15:44:13] Threads: 12
[2025-07-27 15:44:13] Checking for CVMFS
[2025-07-27 15:44:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:44:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:44:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:44:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:44:15] 2.13.1.0 3600 3302 128432 148813 2 311 40010736 46080001 57546 130560 0 21624504 99.965 3458485 33119 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-27 15:44:15] CVMFS is ok
[2025-07-27 15:44:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:44:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:44:15] Further information can be found at the LHC@home message board.
[2025-07-27 15:44:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:44:15] Checking for apptainer binary...
[2025-07-27 15:44:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:44:15] Running /usr/bin/apptainer --version
[2025-07-27 15:44:15] apptainer version 1.4.1-1.el9
[2025-07-27 15:44:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:45:26] mff2102.farm.particle.cz
[2025-07-27 15:45:26] apptainer works
[2025-07-27 15:45:26] Set ATHENA_PROC_NUMBER=12
[2025-07-27 15:45:26] Set ATHENA_CORE_NUMBER=12
[2025-07-27 15:45:26] Starting ATLAS job with PandaID=6745890274
[2025-07-27 15:45:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:32:39]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:32:39] 2025-07-27 15:30:07,868 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:32:39] 2025-07-27 15:30:08,649 | INFO     | monitor loop #427: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:08,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:11,156 | INFO     | monitor loop #428: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:11,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:13,662 | INFO     | monitor loop #429: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:13,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:16,168 | INFO     | monitor loop #430: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:16,169 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:18,673 | INFO     | monitor loop #431: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:18,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:21,179 | INFO     | monitor loop #432: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:21,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:23,684 | INFO     | monitor loop #433: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:23,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:25,886 | INFO     | 6207s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 17:32:39] 2025-07-27 15:30:26,191 | INFO     | monitor loop #434: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:26,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:28,080 | INFO     | PID=3982356 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:32:39] 2025-07-27 15:30:28,080 | INFO     | .. there are 90 such processes running
[2025-07-27 17:32:39] 2025-07-27 15:30:28,702 | INFO     | monitor loop #435: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:28,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:31,206 | INFO     | monitor loop #436: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:31,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:33,716 | INFO     | monitor loop #437: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:33,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:36,221 | INFO     | monitor loop #438: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:36,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:38,731 | INFO     | monitor loop #439: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:38,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:41,236 | INFO     | monitor loop #440: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:41,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:43,742 | INFO     | monitor loop #441: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:43,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:46,246 | INFO     | monitor loop #442: job 0:6745890274 is in state 'finished'
[2025-07-27 17:32:39] 2025-07-27 15:30:46,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:32:39] 2025-07-27 15:30:47,731 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:32:39] 2025-07-27 15:30:47,756 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2817.1208125
[2025-07-27 17:32:39] 2025-07-27 15:30:47,784 | INFO     | using path: /scratch/.boinc/slots/6/PanDA_Pilot-6745890274/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:32:39] 2025-07-27 15:30:47,785 | INFO     | extracted standard info from prmon json
[2025-07-27 17:32:39] 2025-07-27 15:30:47,785 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:32:39] 2025-07-27 15:30:47,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:32:39] 2025-07-27 15:30:47,786 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:32:39] 2025-07-27 15:30:47,786 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:32:39] 2025-07-27 15:30:47,788 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:32:39] 2025-07-27 15:30:47,788 | INFO     | sum of square deviations: 233647572.7252742
[2025-07-27 17:32:39] 2025-07-27 15:30:47,788 | INFO     | sum of deviations: 17876355993.25275
[2025-07-27 17:32:39] 2025-07-27 15:30:47,788 | INFO     | mean x: 1753627277.054945
[2025-07-27 17:32:39] 2025-07-27 15:30:47,788 | INFO     | mean y: 2613692.5494505493
[2025-07-27 17:32:39] 2025-07-27 15:30:47,788 | INFO     | -- intersect: -134167260697.59709
[2025-07-27 17:32:39] 2025-07-27 15:30:47,789 | INFO     | intersect: -134167260697.59709
[2025-07-27 17:32:39] 2025-07-27 15:30:47,789 | INFO     | chi2: 0.9717982618950884
[2025-07-27 17:32:39] 2025-07-27 15:30:47,789 | INFO     | -- intersect: -134167260697.59709
[2025-07-27 17:32:39] 2025-07-27 15:30:47,789 | INFO     | current memory leak: 76.51 B/s (using 91 data points, chi2=0.97)
[2025-07-27 17:32:39] 2025-07-27 15:30:47,789 | INFO     | could have reported an average CPU frequency of 2812 MHz (7 samples)
[2025-07-27 17:32:39] 2025-07-27 15:30:47,789 | INFO     | ..............................
[2025-07-27 17:32:39] 2025-07-27 15:30:47,789 | INFO     | . Timing measurements:
[2025-07-27 17:32:39] 2025-07-27 15:30:47,790 | INFO     | . get job = 0 s
[2025-07-27 17:32:39] 2025-07-27 15:30:47,790 | INFO     | . initial setup = 5 s
[2025-07-27 17:32:39] 2025-07-27 15:30:47,790 | INFO     | . payload setup = 72 s
[2025-07-27 17:32:39] 2025-07-27 15:30:47,790 | INFO     | . stage-in = 0 s
[2025-07-27 17:32:39] 2025-07-27 15:30:47,790 | INFO     | . payload execution = 6013 s
[2025-07-27 17:32:39] 2025-07-27 15:30:47,790 | INFO     | . stage-out = 2 s
[2025-07-27 17:32:39] 2025-07-27 15:30:47,790 | INFO     | . log creation = 0 s
[2025-07-27 17:32:39] 2025-07-27 15:30:47,790 | INFO     | ..............................
[2025-07-27 17:32:39] 2025-07-27 15:30:48,184 | INFO     | 
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | job summary report
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | --------------------------------------------------
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | PanDA job id: 6745890274
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | task id: 45743349
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | errors: (none)
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | pilot state: finished 
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | transexitcode: 0
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | exeerrorcode: 0
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | exeerrordiag: 
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | exitcode: 0
[2025-07-27 17:32:39] 2025-07-27 15:30:48,185 | INFO     | exitmsg: OK
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | cpuconsumptiontime: 42501 s
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | nevents: 400
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | neventsw: 0
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | pid: 4007580
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | pgrp: 4007580
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | corecount: 12
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | event service: False
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | sizes: {0: 2397253, 1: 2397452, 12: 2397452, 22: 2397480, 33: 2397508, 40: 2397826, 44: 2397982, 6090: 2424934, 6094: 2433934, 6095: 2433990, 6135: 2434184}
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | --------------------------------------------------
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | 
[2025-07-27 17:32:39] 2025-07-27 15:30:48,186 | INFO     | executing command: ls -lF /scratch/.boinc/slots/6
[2025-07-27 17:32:39] 2025-07-27 15:30:48,372 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,372 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,372 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,372 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,372 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,372 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,373 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,374 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:32:39] 2025-07-27 15:30:48,374 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,374 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:32:39] 2025-07-27 15:30:48,374 | INFO     | job 6745890274 has completed (purged errors)
[2025-07-27 17:32:39] 2025-07-27 15:30:48,374 | INFO     | overall cleanup function is called
[2025-07-27 17:32:39] 2025-07-27 15:30:49,388 | INFO     | --- collectZombieJob: --- 10, [4007580]
[2025-07-27 17:32:39] 2025-07-27 15:30:49,389 | INFO     | zombie collector waiting for pid 4007580
[2025-07-27 17:32:39] 2025-07-27 15:30:49,389 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:32:39] 2025-07-27 15:30:49,389 | INFO     | collected zombie processes
[2025-07-27 17:32:39] 2025-07-27 15:30:49,389 | INFO     | will attempt to kill all subprocesses of pid=4007580
[2025-07-27 17:32:39] 2025-07-27 15:30:50,271 | INFO     | process IDs to be killed: [4007580] (in reverse order)
[2025-07-27 17:32:39] 2025-07-27 15:30:50,889 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:32:39] 2025-07-27 15:30:50,889 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:32:39] 2025-07-27 15:30:50,921 | INFO     | did not find any defunct processes belonging to 4007580
[2025-07-27 17:32:39] 2025-07-27 15:30:50,948 | INFO     | did not find any defunct processes belonging to 4007580
[2025-07-27 17:32:39] 2025-07-27 15:30:50,949 | INFO     | ready for new job
[2025-07-27 17:32:39] 2025-07-27 15:30:50,949 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:32:39] 2025-07-27 15:30:50,950 | INFO     | ***************************************
[2025-07-27 17:32:39] 2025-07-27 15:30:50,951 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:32:39] 2025-07-27 15:30:50,951 | INFO     | ***************************************
[2025-07-27 17:32:39] 2025-07-27 15:30:50,951 | INFO     | 
[2025-07-27 17:32:39] 2025-07-27 15:30:50,957 | INFO     | architecture information:
[2025-07-27 17:32:39] 2025-07-27 15:30:50,957 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:32:39] 2025-07-27 15:30:51,072 | INFO     | cat /etc/os-release:
[2025-07-27 17:32:39] NAME="CentOS Linux"
[2025-07-27 17:32:39] VERSION="7 (Core)"
[2025-07-27 17:32:39] ID="centos"
[2025-07-27 17:32:39] ID_LIKE="rhel fedora"
[2025-07-27 17:32:39] VERSION_ID="7"
[2025-07-27 17:32:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:32:39] ANSI_COLOR="0;31"
[2025-07-27 17:32:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:32:39] HOME_URL="https://www.centos.org/"
[2025-07-27 17:32:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:32:39] 
[2025-07-27 17:32:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:32:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:32:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:32:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:32:39] 
[2025-07-27 17:32:39] 2025-07-27 15:30:51,073 | INFO     | ***************************************
[2025-07-27 17:32:39] 2025-07-27 15:30:51,576 | INFO     | executing command: df -mP /scratch/.boinc/slots/6
[2025-07-27 17:32:39] 2025-07-27 15:30:51,694 | INFO     | sufficient remaining disk space (1668179558400 B)
[2025-07-27 17:32:39] 2025-07-27 15:30:51,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:32:39] 2025-07-27 15:30:51,694 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:32:39] 2025-07-27 15:30:51,694 | INFO     | update_server=False
[2025-07-27 17:32:39] 2025-07-27 15:30:51,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:32:39] 2025-07-27 15:30:51,809 | INFO     | all job control threads have been joined
[2025-07-27 17:32:39] 2025-07-27 15:30:51,813 | INFO     | all data control threads have been joined
[2025-07-27 17:32:39] 2025-07-27 15:30:51,971 | INFO     | all payload control threads have been joined
[2025-07-27 17:32:39] 2025-07-27 15:30:52,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:32:39] 2025-07-27 15:30:52,274 | INFO     | aborting loop
[2025-07-27 17:32:39] 2025-07-27 15:30:52,417 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:32:39] 2025-07-27 15:30:52,699 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:52,816 | INFO     | [job] control thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:52,818 | INFO     | [data] control thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:52,914 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:32:39] 2025-07-27 15:30:52,980 | INFO     | [payload] control thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:53,077 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:53,279 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:53,377 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:53,406 | INFO     | [job] validate thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:53,489 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:53,600 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:53,922 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:53,951 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:53,970 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:54,243 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:32:39] 2025-07-27 15:30:54,424 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:30:58,254 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:31:02,720 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:32:39] 2025-07-27 15:31:03,727 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:32:39] 2025-07-27 15:31:04,165 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140667906668352)>', '<ExcThread(monitor, started 140667267303168)>']
[2025-07-27 17:32:39] 2025-07-27 15:31:09,191 | INFO     | all workflow threads have been joined
[2025-07-27 17:32:39] 2025-07-27 15:31:09,192 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:32:39] 2025-07-27 15:31:09,192 | INFO     | traces error code: 0
[2025-07-27 17:32:39] 2025-07-27 15:31:09,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:32:39] 2025-07-27 15:31:21,171 | INFO     | PID=3982356 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:32:39] 2025-07-27 15:31:21,172 | INFO     | .. there are 89 such processes running
[2025-07-27 17:32:39] 2025-07-27 15:31:21,172 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:32:39] 2025-07-27 15:31:21,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:32:39] 2025-07-27 15:31:21,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:32:39] 2025-07-27 15:31:21,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:32:39] 2025-07-27 15:31:21,173 | INFO     | [monitor] control thread has ended
[2025-07-27 17:32:39] 2025-07-27 15:31:21,495 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:32:39] 2025-07-27 15:31:21,548 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:32:39] 2025-07-27 15:31:21,589 [wrapper] pilotpid: 3982356
[2025-07-27 17:32:39] 2025-07-27 15:31:21,627 [wrapper] Pilot exit status: 0
[2025-07-27 17:32:39] 2025-07-27 15:31:21,786 [wrapper] pandaids: 6745890274
[2025-07-27 17:32:39] 2025-07-27 15:31:22,244 [wrapper] cleanup supervisor_pilot 4183433 3982357
[2025-07-27 17:32:39] 2025-07-27 15:31:22,294 [wrapper] Test setup, not cleaning
[2025-07-27 17:32:39] 2025-07-27 15:31:22,336 [wrapper] apfmon messages muted
[2025-07-27 17:32:39] 2025-07-27 15:31:22,372 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:32:39] 2025-07-27 15:31:22,407 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:32:39]  *** Error codes and diagnostics ***
[2025-07-27 17:32:39]     "exeErrorCode": 0,
[2025-07-27 17:32:39]     "exeErrorDiag": "",
[2025-07-27 17:32:39]     "pilotErrorCode": 0,
[2025-07-27 17:32:39]     "pilotErrorDiag": "",
[2025-07-27 17:32:39]  *** Listing of results directory ***
[2025-07-27 17:32:39] total 358460
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc    530466 Jul 27 01:07 pilot3.tar.gz
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc      5112 Jul 27 01:18 queuedata.json
[2025-07-27 17:32:39] -rwx------ 1 boinc boinc     36292 Jul 27 01:19 runpilot2-wrapper.sh
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc       100 Jul 27 15:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:32:39] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 15:44 run_atlas
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc       105 Jul 27 15:44 job.xml
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc      6664 Jul 27 15:44 init_data.xml
[2025-07-27 17:32:39] -rw-r--r-- 2 boinc boinc 149395759 Jul 27 15:44 EVNT.45743347._000908.pool.root.1
[2025-07-27 17:32:39] drwxrwx--x 2 boinc boinc      4096 Jul 27 15:44 shared
[2025-07-27 17:32:39] -rw-r--r-- 2 boinc boinc    542901 Jul 27 15:44 input.tar.gz
[2025-07-27 17:32:39] -rw-r--r-- 2 boinc boinc     15095 Jul 27 15:44 start_atlas.sh
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc         0 Jul 27 15:44 boinc_lockfile
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc      2562 Jul 27 15:45 pandaJob.out
[2025-07-27 17:32:39] -rw------- 1 boinc boinc    980117 Jul 27 15:46 agis_schedconf.cvmfs.json
[2025-07-27 17:32:39] -rw------- 1 boinc boinc   1593052 Jul 27 15:47 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:32:39] drwx------ 4 boinc boinc      4096 Jul 27 15:47 pilot3
[2025-07-27 17:32:39] -rw------- 1 boinc boinc 211942918 Jul 27 17:29 HITS.45743349._045536.pool.root.1
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc       529 Jul 27 17:29 boinc_task_state.xml
[2025-07-27 17:32:39] -rw------- 1 boinc boinc      1023 Jul 27 17:29 memory_monitor_summary.json
[2025-07-27 17:32:39] -rw------- 1 boinc boinc    372549 Jul 27 17:30 log.45743349._045536.job.log.tgz.1
[2025-07-27 17:32:39] -rw------- 1 boinc boinc      7772 Jul 27 17:30 heartbeat.json
[2025-07-27 17:32:39] -rw------- 1 boinc boinc        95 Jul 27 17:31 pilot_heartbeat.json
[2025-07-27 17:32:39] -rw------- 1 boinc boinc       823 Jul 27 17:31 pilotlog.txt
[2025-07-27 17:32:39] -rw------- 1 boinc boinc    554273 Jul 27 17:31 log.45743349._045536.job.log.1
[2025-07-27 17:32:39] -rw------- 1 boinc boinc       357 Jul 27 17:31 output.list
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc       620 Jul 27 17:31 runtime_log
[2025-07-27 17:32:39] -rw------- 1 boinc boinc    942080 Jul 27 17:31 result.tar.gz
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc      8721 Jul 27 17:31 runtime_log.err
[2025-07-27 17:32:39] -rw------- 1 boinc boinc       666 Jul 27 17:31 ATvMDmqL3z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDSTLDmO3Ikbm.diag
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc        26 Jul 27 17:32 wrapper_checkpoint.txt
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc      8192 Jul 27 17:32 boinc_mmap_file
[2025-07-27 17:32:39] -rw-r--r-- 1 boinc boinc     22594 Jul 27 17:32 stderr.txt
[2025-07-27 17:32:39] HITS file was successfully produced:
[2025-07-27 17:32:39] -rw------- 1 boinc boinc 211942918 Jul 27 17:29 shared/HITS.pool.root.1
[2025-07-27 17:32:39]  *** Contents of shared directory: ***
[2025-07-27 17:32:39] total 354348
[2025-07-27 17:32:39] -rw-r--r-- 2 boinc boinc 149395759 Jul 27 15:44 ATLAS.root_0
[2025-07-27 17:32:39] -rw-r--r-- 2 boinc boinc    542901 Jul 27 15:44 input.tar.gz
[2025-07-27 17:32:39] -rw-r--r-- 2 boinc boinc     15095 Jul 27 15:44 start_atlas.sh
[2025-07-27 17:32:39] -rw------- 1 boinc boinc 211942918 Jul 27 17:29 HITS.pool.root.1
[2025-07-27 17:32:39] -rw------- 1 boinc boinc    942080 Jul 27 17:31 result.tar.gz
17:32:41 (3964575): run_atlas exited; CPU time 42820.854538
17:32:41 (3964575): called boinc_finish(0)

</stderr_txt>
]]>

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