Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:44 (4047319): wrapper (7.7.26015): starting
00:10:44 (4047319): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 00:10:44] Arguments: --nthreads 12
[2025-07-27 00:10:44] Threads: 12
[2025-07-27 00:10:44] Checking for CVMFS
[2025-07-27 00:10:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 00:10:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 00:10:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 00:10:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 00:10:44] 2.13.1.0 130251 6199 135308 148799 2 65 37226199 40960001 5198 16776704 0 6415813 99.739 7615875 35967 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 00:10:44] CVMFS is ok
[2025-07-27 00:10:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 00:10:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 00:10:44] Further information can be found at the LHC@home message board.
[2025-07-27 00:10:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 00:10:44] Checking for apptainer binary...
[2025-07-27 00:10:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 00:10:44] Running /usr/bin/apptainer --version
[2025-07-27 00:10:44] apptainer version 1.4.1-1.el9
[2025-07-27 00:10:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 00:10:44] c-210-8.aglt2.org
[2025-07-27 00:10:44] apptainer works
[2025-07-27 00:10:44] Set ATHENA_PROC_NUMBER=12
[2025-07-27 00:10:44] Set ATHENA_CORE_NUMBER=12
[2025-07-27 00:10:44] Starting ATLAS job with PandaID=6745835374
[2025-07-27 00:10:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 01:47:09]  *** The last 200 lines of the pilot log: ***
[2025-07-27 01:47:09]  filetype=log
[2025-07-27 01:47:09]  guid=a202b27a-5da8-4d06-b798-7b84e57a3c14
[2025-07-27 01:47:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-27 01:47:09]  is_altstaged=None
[2025-07-27 01:47:09]  is_tar=False
[2025-07-27 01:47:09]  lfn=log.45743349._045480.job.log.tgz.1
[2025-07-27 01:47:09]  mtime=0
[2025-07-27 01:47:09]  protocol_id=None
[2025-07-27 01:47:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 01:47:09]  replicas=None
[2025-07-27 01:47:09]  scope=mc23_13p6TeV
[2025-07-27 01:47:09]  status=None
[2025-07-27 01:47:09]  status_code=0
[2025-07-27 01:47:09]  storage_token=
[2025-07-27 01:47:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745835374/log.45743349._045480.job.log.tgz.1
[2025-07-27 01:47:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b0/63/log.45743349._045480.job.log.tgz.1
[2025-07-27 01:47:09]  workdir=None
[2025-07-27 01:47:09] ]
[2025-07-27 01:47:09] 2025-07-27 05:46:32,428 | INFO     | transferring file log.45743349._045480.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745835374/log.45743349._045480.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 01:47:09] 2025-07-27 05:46:32,429 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745835374/log.45743349._045480.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._045480.job
[2025-07-27 01:47:09] 2025-07-27 05:46:32,444 | INFO     | adding to output.list: log.45743349._045480.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b0/63/log.45743349._045480.job.log.tg
[2025-07-27 01:47:09] 2025-07-27 05:46:32,445 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 01:47:09] 2025-07-27 05:46:32,445 | INFO     | summary of transferred files:
[2025-07-27 01:47:09] 2025-07-27 05:46:32,445 | INFO     |  -- lfn=log.45743349._045480.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 01:47:09] 2025-07-27 05:46:32,445 | INFO     | stage-out finished correctly
[2025-07-27 01:47:09] 2025-07-27 05:46:32,505 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 01:47:09] 2025-07-27 05:46:32,600 | INFO     | job 6745835374 has state=finished
[2025-07-27 01:47:09] 2025-07-27 05:46:32,600 | INFO     | preparing for final server update for job 6745835374 in state='finished'
[2025-07-27 01:47:09] 2025-07-27 05:46:32,600 | INFO     | this job has now completed (state=finished)
[2025-07-27 01:47:09] 2025-07-27 05:46:32,600 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 01:47:09] 2025-07-27 05:46:32,601 | INFO     | log transfer has been attempted: DONE
[2025-07-27 01:47:09] 2025-07-27 05:46:32,601 | INFO     | job 6745835374 has finished - writing final server update
[2025-07-27 01:47:09] 2025-07-27 05:46:32,601 | INFO     | total number of processed events: 400 (read)
[2025-07-27 01:47:09] 2025-07-27 05:46:32,603 | INFO     | executing command: lscpu
[2025-07-27 01:47:09] 2025-07-27 05:46:32,642 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 01:47:09] 2025-07-27 05:46:34,861 | INFO     | monitor loop #427: job 0:6745835374 is in state 'finished'
[2025-07-27 01:47:09] 2025-07-27 05:46:34,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 01:47:09] 2025-07-27 05:46:35,867 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 01:47:09] 2025-07-27 05:46:35,876 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2655.7206666666666
[2025-07-27 01:47:09] 2025-07-27 05:46:35,886 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745835374/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 01:47:09] 2025-07-27 05:46:35,888 | INFO     | extracted standard info from prmon json
[2025-07-27 01:47:09] 2025-07-27 05:46:35,888 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 01:47:09] 2025-07-27 05:46:35,888 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 01:47:09] 2025-07-27 05:46:35,889 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 01:47:09] 2025-07-27 05:46:35,889 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 01:47:09] 2025-07-27 05:46:35,891 | INFO     | fitting pss+swap vs Time
[2025-07-27 01:47:09] 2025-07-27 05:46:35,892 | INFO     | sum of square deviations: 204163828.0
[2025-07-27 01:47:09] 2025-07-27 05:46:35,893 | INFO     | sum of deviations: -1862583515.9999998
[2025-07-27 01:47:09] 2025-07-27 05:46:35,893 | INFO     | mean x: 1753592412.0
[2025-07-27 01:47:09] 2025-07-27 05:46:35,893 | INFO     | mean y: 2831984.793103448
[2025-07-27 01:47:09] 2025-07-27 05:46:35,893 | INFO     | -- intersect: 16000829046.123089
[2025-07-27 01:47:09] 2025-07-27 05:46:35,893 | INFO     | intersect: 16000829046.123089
[2025-07-27 01:47:09] 2025-07-27 05:46:35,893 | INFO     | chi2: 0.11127773671110441
[2025-07-27 01:47:09] 2025-07-27 05:46:35,894 | INFO     | -- intersect: 16000829046.123089
[2025-07-27 01:47:09] 2025-07-27 05:46:35,894 | INFO     | current memory leak: -9.12 B/s (using 87 data points, chi2=0.11)
[2025-07-27 01:47:09] 2025-07-27 05:46:35,894 | INFO     | could have reported an average CPU frequency of 2559 MHz (7 samples)
[2025-07-27 01:47:09] 2025-07-27 05:46:35,895 | INFO     | ..............................
[2025-07-27 01:47:09] 2025-07-27 05:46:35,895 | INFO     | . Timing measurements:
[2025-07-27 01:47:09] 2025-07-27 05:46:35,895 | INFO     | . get job = 0 s
[2025-07-27 01:47:09] 2025-07-27 05:46:35,895 | INFO     | . initial setup = 2 s
[2025-07-27 01:47:09] 2025-07-27 05:46:35,895 | INFO     | . payload setup = 7 s
[2025-07-27 01:47:09] 2025-07-27 05:46:35,895 | INFO     | . stage-in = 0 s
[2025-07-27 01:47:09] 2025-07-27 05:46:35,895 | INFO     | . payload execution = 5708 s
[2025-07-27 01:47:09] 2025-07-27 05:46:35,895 | INFO     | . stage-out = 0 s
[2025-07-27 01:47:09] 2025-07-27 05:46:35,895 | INFO     | . log creation = 0 s
[2025-07-27 01:47:09] 2025-07-27 05:46:35,896 | INFO     | ..............................
[2025-07-27 01:47:09] 2025-07-27 05:46:36,001 | INFO     | 
[2025-07-27 01:47:09] 2025-07-27 05:46:36,001 | INFO     | job summary report
[2025-07-27 01:47:09] 2025-07-27 05:46:36,001 | INFO     | --------------------------------------------------
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | PanDA job id: 6745835374
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | task id: 45743349
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | errors: (none)
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | pilot state: finished 
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | transexitcode: 0
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | exeerrorcode: 0
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | exeerrordiag: 
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | exitcode: 0
[2025-07-27 01:47:09] 2025-07-27 05:46:36,002 | INFO     | exitmsg: OK
[2025-07-27 01:47:09] 2025-07-27 05:46:36,003 | INFO     | cpuconsumptiontime: 61718 s
[2025-07-27 01:47:09] 2025-07-27 05:46:36,003 | INFO     | nevents: 400
[2025-07-27 01:47:09] 2025-07-27 05:46:36,003 | INFO     | neventsw: 0
[2025-07-27 01:47:09] 2025-07-27 05:46:36,003 | INFO     | pid: 4057376
[2025-07-27 01:47:09] 2025-07-27 05:46:36,003 | INFO     | pgrp: 4057376
[2025-07-27 01:47:09] 2025-07-27 05:46:36,003 | INFO     | corecount: 12
[2025-07-27 01:47:09] 2025-07-27 05:46:36,003 | INFO     | event service: False
[2025-07-27 01:47:09] 2025-07-27 05:46:36,003 | INFO     | sizes: {0: 2397302, 1: 2397501, 6: 2397763, 11: 2397791, 5719: 2424381, 5720: 2433563, 5724: 2433701}
[2025-07-27 01:47:09] 2025-07-27 05:46:36,003 | INFO     | --------------------------------------------------
[2025-07-27 01:47:09] 2025-07-27 05:46:36,004 | INFO     | 
[2025-07-27 01:47:09] 2025-07-27 05:46:36,004 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 01:47:09] 2025-07-27 05:46:36,019 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,021 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 01:47:09] 2025-07-27 05:46:36,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 01:47:09] 2025-07-27 05:46:36,021 | INFO     | job 6745835374 has completed (purged errors)
[2025-07-27 01:47:09] 2025-07-27 05:46:36,021 | INFO     | overall cleanup function is called
[2025-07-27 01:47:09] 2025-07-27 05:46:37,028 | INFO     | --- collectZombieJob: --- 10, [4057376]
[2025-07-27 01:47:09] 2025-07-27 05:46:37,029 | INFO     | zombie collector waiting for pid 4057376
[2025-07-27 01:47:09] 2025-07-27 05:46:37,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 01:47:09] 2025-07-27 05:46:37,029 | INFO     | collected zombie processes
[2025-07-27 01:47:09] 2025-07-27 05:46:37,029 | INFO     | will attempt to kill all subprocesses of pid=4057376
[2025-07-27 01:47:09] 2025-07-27 05:46:37,249 | INFO     | process IDs to be killed: [4057376] (in reverse order)
[2025-07-27 01:47:09] 2025-07-27 05:46:37,307 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 01:47:09] 2025-07-27 05:46:37,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 01:47:09] 2025-07-27 05:46:37,313 | INFO     | did not find any defunct processes belonging to 4057376
[2025-07-27 01:47:09] 2025-07-27 05:46:37,318 | INFO     | did not find any defunct processes belonging to 4057376
[2025-07-27 01:47:09] 2025-07-27 05:46:37,319 | INFO     | ready for new job
[2025-07-27 01:47:09] 2025-07-27 05:46:37,319 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 01:47:09] 2025-07-27 05:46:37,320 | INFO     | ***************************************
[2025-07-27 01:47:09] 2025-07-27 05:46:37,320 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 01:47:09] 2025-07-27 05:46:37,320 | INFO     | ***************************************
[2025-07-27 01:47:09] 2025-07-27 05:46:37,320 | INFO     | 
[2025-07-27 01:47:09] 2025-07-27 05:46:37,322 | INFO     | architecture information:
[2025-07-27 01:47:09] 2025-07-27 05:46:37,323 | INFO     | executing command: cat /etc/os-release
[2025-07-27 01:47:09] 2025-07-27 05:46:37,334 | INFO     | cat /etc/os-release:
[2025-07-27 01:47:09] NAME="CentOS Linux"
[2025-07-27 01:47:09] VERSION="7 (Core)"
[2025-07-27 01:47:09] ID="centos"
[2025-07-27 01:47:09] ID_LIKE="rhel fedora"
[2025-07-27 01:47:09] VERSION_ID="7"
[2025-07-27 01:47:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 01:47:09] ANSI_COLOR="0;31"
[2025-07-27 01:47:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 01:47:09] HOME_URL="https://www.centos.org/"
[2025-07-27 01:47:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 01:47:09] 
[2025-07-27 01:47:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 01:47:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 01:47:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 01:47:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 01:47:09] 
[2025-07-27 01:47:09] 2025-07-27 05:46:37,334 | INFO     | ***************************************
[2025-07-27 01:47:09] 2025-07-27 05:46:37,836 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 01:47:09] 2025-07-27 05:46:37,851 | INFO     | sufficient remaining disk space (64702382080 B)
[2025-07-27 01:47:09] 2025-07-27 05:46:37,851 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 01:47:09] 2025-07-27 05:46:37,852 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 01:47:09] 2025-07-27 05:46:37,852 | INFO     | update_server=False
[2025-07-27 01:47:09] 2025-07-27 05:46:37,852 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 01:47:09] 2025-07-27 05:46:37,852 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:47:09] 2025-07-27 05:46:38,012 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 01:47:09] 2025-07-27 05:46:38,121 | INFO     | all data control threads have been joined
[2025-07-27 01:47:09] 2025-07-27 05:46:38,369 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:47:09] 2025-07-27 05:46:38,370 | INFO     | aborting loop
[2025-07-27 01:47:09] 2025-07-27 05:46:38,372 | INFO     | all job control threads have been joined
[2025-07-27 01:47:09] 2025-07-27 05:46:38,417 | INFO     | all payload control threads have been joined
[2025-07-27 01:47:09] 2025-07-27 05:46:38,605 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 01:47:09] 2025-07-27 05:46:38,857 | INFO     | [job] retrieve thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:38,858 | INFO     | [job] queue monitor thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,107 | INFO     | [job] validate thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,127 | INFO     | [data] control thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,355 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,356 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,375 | INFO     | [job] job monitor thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,375 | INFO     | [job] control thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,422 | INFO     | [payload] control thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,559 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,560 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,928 | INFO     | [data] copytool_in thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:39,935 | INFO     | [payload] validate_post thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:40,017 | INFO     | [data] copytool_out thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:40,334 | INFO     | [payload] failed_post thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:42,610 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 01:47:09] 2025-07-27 05:46:43,432 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140488581240640)>', '<ExcThread(monitor, started 140488061458176)>']
[2025-07-27 01:47:09] 2025-07-27 05:46:48,457 | INFO     | all workflow threads have been joined
[2025-07-27 01:47:09] 2025-07-27 05:46:48,457 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 01:47:09] 2025-07-27 05:46:48,458 | INFO     | traces error code: 0
[2025-07-27 01:47:09] 2025-07-27 05:46:48,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 01:47:09] 2025-07-27 05:47:08,804 | INFO     | PID=4050923 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 01:47:09] 2025-07-27 05:47:08,805 | INFO     | .. there are 7 such processes running
[2025-07-27 01:47:09] 2025-07-27 05:47:08,806 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 01:47:09] 2025-07-27 05:47:08,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 01:47:09] 2025-07-27 05:47:08,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 01:47:09] 2025-07-27 05:47:08,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 01:47:09] 2025-07-27 05:47:08,806 | INFO     | [monitor] control thread has ended
[2025-07-27 01:47:09] 2025-07-27 05:47:08,939 [wrapper] ==== pilot stdout END ====
[2025-07-27 01:47:09] 2025-07-27 05:47:08,941 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 01:47:09] 2025-07-27 05:47:08,944 [wrapper] pilotpid: 4050923
[2025-07-27 01:47:09] 2025-07-27 05:47:08,946 [wrapper] Pilot exit status: 0
[2025-07-27 01:47:09] 2025-07-27 05:47:08,955 [wrapper] pandaids: 6745835374
[2025-07-27 01:47:09] 2025-07-27 05:47:09,008 [wrapper] cleanup supervisor_pilot 4184497 4050924
[2025-07-27 01:47:09] 2025-07-27 05:47:09,011 [wrapper] Test setup, not cleaning
[2025-07-27 01:47:09] 2025-07-27 05:47:09,014 [wrapper] apfmon messages muted
[2025-07-27 01:47:09] 2025-07-27 05:47:09,016 [wrapper] ==== wrapper stdout END ====
[2025-07-27 01:47:09] 2025-07-27 05:47:09,018 [wrapper] ==== wrapper stderr END ====
[2025-07-27 01:47:09]  *** Error codes and diagnostics ***
[2025-07-27 01:47:09]     "exeErrorCode": 0,
[2025-07-27 01:47:09]     "exeErrorDiag": "",
[2025-07-27 01:47:09]     "pilotErrorCode": 0,
[2025-07-27 01:47:09]     "pilotErrorDiag": "",
[2025-07-27 01:47:09]  *** Listing of results directory ***
[2025-07-27 01:47:09] total 352316
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 18:18 pilot3.tar.gz
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 18:33 queuedata.json
[2025-07-27 01:47:09] -rwx------. 1 boincer umatlas     36292 Jul 26 18:34 runpilot2-wrapper.sh
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas       100 Jul 27 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 01:47:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 00:10 run_atlas
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas       105 Jul 27 00:10 job.xml
[2025-07-27 01:47:09] -rw-r--r--. 2 boincer umatlas 145432688 Jul 27 00:10 EVNT.45743347._002540.pool.root.1
[2025-07-27 01:47:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 00:10 start_atlas.sh
[2025-07-27 01:47:09] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 00:10 shared
[2025-07-27 01:47:09] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 00:10 input.tar.gz
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas         0 Jul 27 00:10 boinc_lockfile
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 00:10 pandaJob.out
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas    980125 Jul 27 00:10 agis_schedconf.cvmfs.json
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas   1593052 Jul 27 00:10 agis_ddmendpoints.agis.ALL.json
[2025-07-27 01:47:09] drwx------. 4 boincer umatlas      4096 Jul 27 00:10 pilot3
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas      6610 Jul 27 01:36 init_data.xml
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas 209613954 Jul 27 01:45 HITS.45743349._045480.pool.root.1
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas       529 Jul 27 01:46 boinc_task_state.xml
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas      1038 Jul 27 01:46 memory_monitor_summary.json
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas    364750 Jul 27 01:46 log.45743349._045480.job.log.tgz.1
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas      7820 Jul 27 01:46 heartbeat.json
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 01:46 boinc_mmap_file
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas        27 Jul 27 01:46 wrapper_checkpoint.txt
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas        95 Jul 27 01:47 pilot_heartbeat.json
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas       822 Jul 27 01:47 pilotlog.txt
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas    558674 Jul 27 01:47 log.45743349._045480.job.log.1
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas       357 Jul 27 01:47 output.list
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas       620 Jul 27 01:47 runtime_log
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas    942080 Jul 27 01:47 result.tar.gz
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas      8657 Jul 27 01:47 runtime_log.err
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas       653 Jul 27 01:47 ikZKDmMe2z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmHY1KDmLd3WQo.diag
[2025-07-27 01:47:09] -rw-r--r--. 1 boincer umatlas     21303 Jul 27 01:47 stderr.txt
[2025-07-27 01:47:09] HITS file was successfully produced:
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas 209613954 Jul 27 01:45 shared/HITS.pool.root.1
[2025-07-27 01:47:09]  *** Contents of shared directory: ***
[2025-07-27 01:47:09] total 348204
[2025-07-27 01:47:09] -rw-r--r--. 2 boincer umatlas 145432688 Jul 27 00:10 ATLAS.root_0
[2025-07-27 01:47:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 00:10 start_atlas.sh
[2025-07-27 01:47:09] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 00:10 input.tar.gz
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas 209613954 Jul 27 01:45 HITS.pool.root.1
[2025-07-27 01:47:09] -rw-------. 1 boincer umatlas    942080 Jul 27 01:47 result.tar.gz
01:47:10 (4047319): run_atlas exited; CPU time 61829.050797
01:47:10 (4047319): called boinc_finish(0)

</stderr_txt>
]]>

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