Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
05:05:42 (3274009): wrapper (7.7.26015): starting
05:05:42 (3274009): wrapper: running run_atlas (--nthreads 12)
[2025-07-29 05:05:42] Arguments: --nthreads 12
[2025-07-29 05:05:42] Threads: 12
[2025-07-29 05:05:42] Checking for CVMFS
[2025-07-29 05:05:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 05:05:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 05:05:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 05:05:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 05:05:47] 2.13.1.0 3274237 0 23932 148882 3 1 3863221 6144001 0 130560 0 0 0.000 1291 946 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-29 05:05:47] CVMFS is ok
[2025-07-29 05:05:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 05:05:47] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-29 05:05:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-29 05:05:47] Further information can be found at the LHC@home message board.
[2025-07-29 05:05:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 05:05:47] Checking for apptainer binary...
[2025-07-29 05:05:47] apptainer is not installed, using version from CVMFS
[2025-07-29 05:05:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 05:05:47] ace
[2025-07-29 05:05:47] apptainer works
[2025-07-29 05:05:47] Set ATHENA_PROC_NUMBER=12
[2025-07-29 05:05:47] Set ATHENA_CORE_NUMBER=12
[2025-07-29 05:05:47] Starting ATLAS job with PandaID=6745851324
[2025-07-29 05:05:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 06:33:03]  *** The last 200 lines of the pilot log: ***
[2025-07-29 06:33:03]  mtime=0
[2025-07-29 06:33:03]  protocol_id=None
[2025-07-29 06:33:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-29 06:33:03]  replicas=None
[2025-07-29 06:33:03]  scope=mc23_13p6TeV
[2025-07-29 06:33:03]  status=None
[2025-07-29 06:33:03]  status_code=0
[2025-07-29 06:33:03]  storage_token=
[2025-07-29 06:33:03]  surl=/var/lib/boinc-client/slots/14/PanDA_Pilot-6745851324/log.45759596._000117.job.log.tgz.1
[2025-07-29 06:33:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/ac/log.45759596._000117.job.log.tgz.1
[2025-07-29 06:33:03]  workdir=None
[2025-07-29 06:33:03] ]
[2025-07-29 06:33:03] 2025-07-29 11:32:21,688 | INFO     | transferring file log.45759596._000117.job.log.tgz.1 from /var/lib/boinc-client/slots/14/PanDA_Pilot-6745851324/log.45759596._000117.job.log.tgz.1 to /var/lib/boin
[2025-07-29 06:33:03] 2025-07-29 11:32:21,688 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/14/PanDA_Pilot-6745851324/log.45759596._000117.job.log.tgz.1 /var/lib/boinc-client/slots/14/log.4575
[2025-07-29 06:33:03] 2025-07-29 11:32:21,701 | INFO     | adding to output.list: log.45759596._000117.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/ac/log.45759596._000117.job.log.tg
[2025-07-29 06:33:03] 2025-07-29 11:32:21,702 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-29 06:33:03] 2025-07-29 11:32:21,702 | INFO     | summary of transferred files:
[2025-07-29 06:33:03] 2025-07-29 11:32:21,702 | INFO     |  -- lfn=log.45759596._000117.job.log.tgz.1, status_code=0, status=transferred
[2025-07-29 06:33:03] 2025-07-29 11:32:21,702 | INFO     | stage-out finished correctly
[2025-07-29 06:33:03] 2025-07-29 11:32:22,642 | INFO     | monitor loop #385: job 0:6745851324 is in state 'finished'
[2025-07-29 06:33:03] 2025-07-29 11:32:22,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 06:33:03] 2025-07-29 11:32:23,746 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-29 06:33:03] 2025-07-29 11:32:24,474 | INFO     | job 6745851324 has state=finished
[2025-07-29 06:33:03] 2025-07-29 11:32:24,475 | INFO     | preparing for final server update for job 6745851324 in state='finished'
[2025-07-29 06:33:03] 2025-07-29 11:32:24,475 | INFO     | this job has now completed (state=finished)
[2025-07-29 06:33:03] 2025-07-29 11:32:24,475 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-29 06:33:03] 2025-07-29 11:32:24,475 | INFO     | log transfer has been attempted: DONE
[2025-07-29 06:33:03] 2025-07-29 11:32:24,475 | INFO     | job 6745851324 has finished - writing final server update
[2025-07-29 06:33:03] 2025-07-29 11:32:24,475 | INFO     | total number of processed events: 400 (read)
[2025-07-29 06:33:03] 2025-07-29 11:32:24,476 | INFO     | executing command: lscpu
[2025-07-29 06:33:03] 2025-07-29 11:32:24,494 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-29 06:33:03] 2025-07-29 11:32:25,145 | INFO     | monitor loop #386: job 0:6745851324 is in state 'finished'
[2025-07-29 06:33:03] 2025-07-29 11:32:25,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 06:33:03] 2025-07-29 11:32:27,646 | INFO     | monitor loop #387: job 0:6745851324 is in state 'finished'
[2025-07-29 06:33:03] 2025-07-29 11:32:27,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 06:33:03] 2025-07-29 11:32:30,149 | INFO     | monitor loop #388: job 0:6745851324 is in state 'finished'
[2025-07-29 06:33:03] 2025-07-29 11:32:30,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 06:33:03] 2025-07-29 11:32:32,009 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-29 06:33:03] 2025-07-29 11:32:32,011 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 2691.0818125
[2025-07-29 06:33:03] 2025-07-29 11:32:32,012 | INFO     | using path: /var/lib/boinc-client/slots/14/PanDA_Pilot-6745851324/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 06:33:03] 2025-07-29 11:32:32,013 | INFO     | extracted standard info from prmon json
[2025-07-29 06:33:03] 2025-07-29 11:32:32,013 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 06:33:03] 2025-07-29 11:32:32,013 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 06:33:03] 2025-07-29 11:32:32,013 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 06:33:03] 2025-07-29 11:32:32,013 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 06:33:03] 2025-07-29 11:32:32,014 | INFO     | fitting pss+swap vs Time
[2025-07-29 06:33:03] 2025-07-29 11:32:32,014 | INFO     | sum of square deviations: 147126479.5
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | sum of deviations: -1194965264.5000005
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | mean x: 1753786247.5
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | mean y: 2764096.858974359
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | -- intersect: 14247063656.275135
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | intersect: 14247063656.275135
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | chi2: 0.04857657340910795
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | -- intersect: 14247063656.275135
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | current memory leak: -8.12 B/s (using 78 data points, chi2=0.05)
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | could have reported an average CPU frequency of 2459 MHz (6 samples)
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | ..............................
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | . Timing measurements:
[2025-07-29 06:33:03] 2025-07-29 11:32:32,015 | INFO     | . get job = 0 s
[2025-07-29 06:33:03] 2025-07-29 11:32:32,016 | INFO     | . initial setup = 3 s
[2025-07-29 06:33:03] 2025-07-29 11:32:32,016 | INFO     | . payload setup = 4 s
[2025-07-29 06:33:03] 2025-07-29 11:32:32,016 | INFO     | . stage-in = 0 s
[2025-07-29 06:33:03] 2025-07-29 11:32:32,016 | INFO     | . payload execution = 5146 s
[2025-07-29 06:33:03] 2025-07-29 11:32:32,016 | INFO     | . stage-out = 0 s
[2025-07-29 06:33:03] 2025-07-29 11:32:32,016 | INFO     | . log creation = 0 s
[2025-07-29 06:33:03] 2025-07-29 11:32:32,016 | INFO     | ..............................
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | 
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | job summary report
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | --------------------------------------------------
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | PanDA job id: 6745851324
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | task id: 45759596
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | errors: (none)
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | pilot state: finished 
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | transexitcode: 0
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | exeerrorcode: 0
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | exeerrordiag: 
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | exitcode: 0
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | exitmsg: OK
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | cpuconsumptiontime: 57763 s
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | nevents: 400
[2025-07-29 06:33:03] 2025-07-29 11:32:32,416 | INFO     | neventsw: 0
[2025-07-29 06:33:03] 2025-07-29 11:32:32,417 | INFO     | pid: 3284933
[2025-07-29 06:33:03] 2025-07-29 11:32:32,417 | INFO     | pgrp: 3284933
[2025-07-29 06:33:03] 2025-07-29 11:32:32,417 | INFO     | corecount: 12
[2025-07-29 06:33:03] 2025-07-29 11:32:32,417 | INFO     | event service: False
[2025-07-29 06:33:03] 2025-07-29 11:32:32,417 | INFO     | sizes: {0: 2391915, 1: 2391915, 7: 2392205, 11: 2392233, 5154: 2418720, 5155: 2427734, 5157: 2427918, 5165: 2428112}
[2025-07-29 06:33:03] 2025-07-29 11:32:32,417 | INFO     | --------------------------------------------------
[2025-07-29 06:33:03] 2025-07-29 11:32:32,417 | INFO     | 
[2025-07-29 06:33:03] 2025-07-29 11:32:32,417 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/14
[2025-07-29 06:33:03] 2025-07-29 11:32:32,431 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,431 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,431 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,431 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,431 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,431 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,431 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,431 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,431 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | job 6745851324 has completed (purged errors)
[2025-07-29 06:33:03] 2025-07-29 11:32:32,432 | INFO     | overall cleanup function is called
[2025-07-29 06:33:03] 2025-07-29 11:32:33,440 | INFO     | --- collectZombieJob: --- 10, [3284933]
[2025-07-29 06:33:03] 2025-07-29 11:32:33,441 | INFO     | zombie collector waiting for pid 3284933
[2025-07-29 06:33:03] 2025-07-29 11:32:33,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 06:33:03] 2025-07-29 11:32:33,441 | INFO     | collected zombie processes
[2025-07-29 06:33:03] 2025-07-29 11:32:33,441 | INFO     | will attempt to kill all subprocesses of pid=3284933
[2025-07-29 06:33:03] 2025-07-29 11:32:33,524 | INFO     | process IDs to be killed: [3284933] (in reverse order)
[2025-07-29 06:33:03] 2025-07-29 11:32:33,558 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 06:33:03] 2025-07-29 11:32:33,558 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 06:33:03] 2025-07-29 11:32:33,561 | INFO     | did not find any defunct processes belonging to 3284933
[2025-07-29 06:33:03] 2025-07-29 11:32:33,562 | INFO     | did not find any defunct processes belonging to 3284933
[2025-07-29 06:33:03] 2025-07-29 11:32:33,563 | INFO     | ready for new job
[2025-07-29 06:33:03] 2025-07-29 11:32:33,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 06:33:03] 2025-07-29 11:32:33,563 | INFO     | ***************************************
[2025-07-29 06:33:03] 2025-07-29 11:32:33,564 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 06:33:03] 2025-07-29 11:32:33,564 | INFO     | ***************************************
[2025-07-29 06:33:03] 2025-07-29 11:32:33,564 | INFO     | 
[2025-07-29 06:33:03] 2025-07-29 11:32:33,564 | INFO     | architecture information:
[2025-07-29 06:33:03] 2025-07-29 11:32:33,564 | INFO     | executing command: cat /etc/os-release
[2025-07-29 06:33:03] 2025-07-29 11:32:33,574 | INFO     | cat /etc/os-release:
[2025-07-29 06:33:03] NAME="CentOS Linux"
[2025-07-29 06:33:03] VERSION="7 (Core)"
[2025-07-29 06:33:03] ID="centos"
[2025-07-29 06:33:03] ID_LIKE="rhel fedora"
[2025-07-29 06:33:03] VERSION_ID="7"
[2025-07-29 06:33:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 06:33:03] ANSI_COLOR="0;31"
[2025-07-29 06:33:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 06:33:03] HOME_URL="https://www.centos.org/"
[2025-07-29 06:33:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 06:33:03] 
[2025-07-29 06:33:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 06:33:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 06:33:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 06:33:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 06:33:03] 
[2025-07-29 06:33:03] 2025-07-29 11:32:33,574 | INFO     | ***************************************
[2025-07-29 06:33:03] 2025-07-29 11:32:34,077 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/14
[2025-07-29 06:33:03] 2025-07-29 11:32:34,088 | INFO     | sufficient remaining disk space (23595057152 B)
[2025-07-29 06:33:03] 2025-07-29 11:32:34,088 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 06:33:03] 2025-07-29 11:32:34,089 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 06:33:03] 2025-07-29 11:32:34,089 | INFO     | update_server=False
[2025-07-29 06:33:03] 2025-07-29 11:32:34,089 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 06:33:03] 2025-07-29 11:32:34,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 06:33:03] 2025-07-29 11:32:34,089 | INFO     | aborting loop
[2025-07-29 06:33:03] 2025-07-29 11:32:34,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 06:33:03] 2025-07-29 11:32:34,664 | INFO     | all payload control threads have been joined
[2025-07-29 06:33:03] 2025-07-29 11:32:34,738 | INFO     | all data control threads have been joined
[2025-07-29 06:33:03] 2025-07-29 11:32:34,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 06:33:03] 2025-07-29 11:32:35,090 | INFO     | [job] job monitor thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:35,093 | INFO     | [job] retrieve thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:35,197 | INFO     | all job control threads have been joined
[2025-07-29 06:33:03] 2025-07-29 11:32:35,206 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:35,218 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:35,342 | INFO     | [job] validate thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:35,666 | INFO     | [payload] control thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:35,742 | INFO     | [data] control thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:35,842 | INFO     | [data] copytool_in thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:36,099 | INFO     | [payload] failed_post thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:36,198 | INFO     | [job] control thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:36,236 | INFO     | [payload] validate_post thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:36,322 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:36,771 | INFO     | [data] copytool_out thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:37,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 06:33:03] 2025-07-29 11:32:38,072 | INFO     | [job] queue monitor thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:38,307 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:45,138 | INFO     | job.realtimelogging is not enabled
[2025-07-29 06:33:03] 2025-07-29 11:32:46,142 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 06:33:03] 2025-07-29 11:32:47,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140566870759232)>', '<ExcThread(monitor, started 140565958096640)>']
[2025-07-29 06:33:03] 2025-07-29 11:32:52,524 | INFO     | all workflow threads have been joined
[2025-07-29 06:33:03] 2025-07-29 11:32:52,525 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 06:33:03] 2025-07-29 11:32:52,525 | INFO     | traces error code: 0
[2025-07-29 06:33:03] 2025-07-29 11:32:52,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 06:33:03] 2025-07-29 11:33:03,717 | INFO     | PID=3278329 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-29 06:33:03] 2025-07-29 11:33:03,718 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 06:33:03] 2025-07-29 11:33:03,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 06:33:03] 2025-07-29 11:33:03,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 06:33:03] 2025-07-29 11:33:03,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 06:33:03] 2025-07-29 11:33:03,718 | INFO     | [monitor] control thread has ended
[2025-07-29 06:33:03] 2025-07-29 11:33:03,804 [wrapper] ==== pilot stdout END ====
[2025-07-29 06:33:03] 2025-07-29 11:33:03,806 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 06:33:03] 2025-07-29 11:33:03,808 [wrapper] pilotpid: 3278329
[2025-07-29 06:33:03] 2025-07-29 11:33:03,809 [wrapper] Pilot exit status: 0
[2025-07-29 06:33:03] 2025-07-29 11:33:03,819 [wrapper] pandaids: 6745851324
[2025-07-29 06:33:03] 2025-07-29 11:33:03,841 [wrapper] cleanup supervisor_pilot 3300148 3278330
[2025-07-29 06:33:03] 2025-07-29 11:33:03,843 [wrapper] Test setup, not cleaning
[2025-07-29 06:33:03] 2025-07-29 11:33:03,845 [wrapper] apfmon messages muted
[2025-07-29 06:33:03] 2025-07-29 11:33:03,846 [wrapper] ==== wrapper stdout END ====
[2025-07-29 06:33:03] 2025-07-29 11:33:03,848 [wrapper] ==== wrapper stderr END ====
[2025-07-29 06:33:03]  *** Error codes and diagnostics ***
[2025-07-29 06:33:03]     "exeErrorCode": 0,
[2025-07-29 06:33:03]     "exeErrorDiag": "",
[2025-07-29 06:33:03]     "pilotErrorCode": 0,
[2025-07-29 06:33:03]     "pilotErrorDiag": "",
[2025-07-29 06:33:03]  *** Listing of results directory ***
[2025-07-29 06:33:03] total 418476
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc    530466 Jul 26 17:38 pilot3.tar.gz
[2025-07-29 06:33:03] -rwx------ 1 boinc boinc     36292 Jul 26 17:53 runpilot2-wrapper.sh
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc      5112 Jul 26 17:53 queuedata.json
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc       100 Jul 29 05:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 06:33:03] -rwxr-xr-x 1 boinc boinc      7986 Jul 29 05:05 run_atlas
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc       105 Jul 29 05:05 job.xml
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc      6789 Jul 29 05:05 init_data.xml
[2025-07-29 06:33:03] -rw-r--r-- 2 boinc boinc 243534319 Jul 29 05:05 EVNT.45759593._000005.pool.root.1
[2025-07-29 06:33:03] drwxrwx--x 2 boinc boinc      4096 Jul 29 05:05 shared
[2025-07-29 06:33:03] -rw-r--r-- 2 boinc boinc    542879 Jul 29 05:05 input.tar.gz
[2025-07-29 06:33:03] -rw-r--r-- 2 boinc boinc     15095 Jul 29 05:05 start_atlas.sh
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc         0 Jul 29 05:05 boinc_lockfile
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc      2564 Jul 29 05:05 pandaJob.out
[2025-07-29 06:33:03] -rw------- 1 boinc boinc    977324 Jul 29 05:06 agis_schedconf.cvmfs.json
[2025-07-29 06:33:03] -rw------- 1 boinc boinc   1589827 Jul 29 05:06 agis_ddmendpoints.agis.ALL.json
[2025-07-29 06:33:03] drwx------ 4 boinc boinc      4096 Jul 29 05:06 pilot3
[2025-07-29 06:33:03] -rw------- 1 boinc boinc 179364368 Jul 29 06:31 HITS.45759596._000117.pool.root.1
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc       529 Jul 29 06:32 boinc_task_state.xml
[2025-07-29 06:33:03] -rw------- 1 boinc boinc        95 Jul 29 06:32 pilot_heartbeat.json
[2025-07-29 06:33:03] -rw------- 1 boinc boinc      1030 Jul 29 06:32 memory_monitor_summary.json
[2025-07-29 06:33:03] -rw------- 1 boinc boinc    374359 Jul 29 06:32 log.45759596._000117.job.log.tgz.1
[2025-07-29 06:33:03] -rw------- 1 boinc boinc      7762 Jul 29 06:32 heartbeat.json
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc      8192 Jul 29 06:32 boinc_mmap_file
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc        27 Jul 29 06:32 wrapper_checkpoint.txt
[2025-07-29 06:33:03] -rw------- 1 boinc boinc       747 Jul 29 06:33 pilotlog.txt
[2025-07-29 06:33:03] -rw------- 1 boinc boinc    498541 Jul 29 06:33 log.45759596._000117.job.log.1
[2025-07-29 06:33:03] -rw------- 1 boinc boinc       357 Jul 29 06:33 output.list
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc       620 Jul 29 06:33 runtime_log
[2025-07-29 06:33:03] -rw------- 1 boinc boinc    890880 Jul 29 06:33 result.tar.gz
[2025-07-29 06:33:03] -rw------- 1 boinc boinc       643 Jul 29 06:33 s3MMDmFx2z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJa1KDmjGSMRo.diag
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc      8711 Jul 29 06:33 runtime_log.err
[2025-07-29 06:33:03] -rw-r--r-- 1 boinc boinc     21856 Jul 29 06:33 stderr.txt
[2025-07-29 06:33:03] HITS file was successfully produced:
[2025-07-29 06:33:03] -rw------- 1 boinc boinc 179364368 Jul 29 06:31 shared/HITS.pool.root.1
[2025-07-29 06:33:03]  *** Contents of shared directory: ***
[2025-07-29 06:33:03] total 414420
[2025-07-29 06:33:03] -rw-r--r-- 2 boinc boinc 243534319 Jul 29 05:05 ATLAS.root_0
[2025-07-29 06:33:03] -rw-r--r-- 2 boinc boinc    542879 Jul 29 05:05 input.tar.gz
[2025-07-29 06:33:03] -rw-r--r-- 2 boinc boinc     15095 Jul 29 05:05 start_atlas.sh
[2025-07-29 06:33:03] -rw------- 1 boinc boinc 179364368 Jul 29 06:31 HITS.pool.root.1
[2025-07-29 06:33:03] -rw------- 1 boinc boinc    890880 Jul 29 06:33 result.tar.gz
06:33:04 (3274009): run_atlas exited; CPU time 57839.772373
06:33:04 (3274009): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN