Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:01:06 (618960): wrapper (7.7.26015): starting
01:01:06 (618960): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 01:01:06] Arguments: --nthreads 12
[2025-07-27 01:01:06] Threads: 12
[2025-07-27 01:01:06] Checking for CVMFS
[2025-07-27 01:01:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 01:01:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 01:01:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 01:01:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 01:01:07] 2.12.6.0 418423 17918 325120 148800 0 384 21339686 32935936 9167 16776704 0 32073383 99.646 53139698 33450 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 01:01:07] CVMFS is ok
[2025-07-27 01:01:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 01:01:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 01:01:07] Further information can be found at the LHC@home message board.
[2025-07-27 01:01:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 01:01:07] Checking for apptainer binary...
[2025-07-27 01:01:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 01:01:07] Running /usr/bin/apptainer --version
[2025-07-27 01:01:07] apptainer version 1.4.1-1.el9
[2025-07-27 01:01:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 01:01:07] c6-1-26-2.aglt2.org
[2025-07-27 01:01:07] apptainer works
[2025-07-27 01:01:07] Set ATHENA_PROC_NUMBER=12
[2025-07-27 01:01:07] Set ATHENA_CORE_NUMBER=12
[2025-07-27 01:01:07] Starting ATLAS job with PandaID=6745835437
[2025-07-27 01:01:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 02:27:34]  *** The last 200 lines of the pilot log: ***
[2025-07-27 02:27:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 02:27:34]  replicas=None
[2025-07-27 02:27:34]  scope=mc23_13p6TeV
[2025-07-27 02:27:34]  status=None
[2025-07-27 02:27:34]  status_code=0
[2025-07-27 02:27:34]  storage_token=
[2025-07-27 02:27:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745835437/log.45759139._000013.job.log.tgz.1
[2025-07-27 02:27:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/7d/log.45759139._000013.job.log.tgz.1
[2025-07-27 02:27:34]  workdir=None
[2025-07-27 02:27:34] ]
[2025-07-27 02:27:34] 2025-07-27 06:26:52,286 | INFO     | transferring file log.45759139._000013.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745835437/log.45759139._000013.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 02:27:34] 2025-07-27 06:26:52,286 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745835437/log.45759139._000013.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759139._000013.job
[2025-07-27 02:27:34] 2025-07-27 06:26:52,306 | INFO     | adding to output.list: log.45759139._000013.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/7d/log.45759139._000013.job.log.tg
[2025-07-27 02:27:34] 2025-07-27 06:26:52,307 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 02:27:34] 2025-07-27 06:26:52,307 | INFO     | summary of transferred files:
[2025-07-27 02:27:34] 2025-07-27 06:26:52,307 | INFO     |  -- lfn=log.45759139._000013.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 02:27:34] 2025-07-27 06:26:52,308 | INFO     | stage-out finished correctly
[2025-07-27 02:27:34] 2025-07-27 06:26:55,656 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 02:27:34] 2025-07-27 06:26:57,437 | WARNING  | process 630939 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 02:27:34] 2025-07-27 06:26:57,437 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745835437/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 02:27:34] 2025-07-27 06:26:57,567 | INFO     | job 6745835437 has state=finished
[2025-07-27 02:27:34] 2025-07-27 06:26:57,567 | INFO     | preparing for final server update for job 6745835437 in state='finished'
[2025-07-27 02:27:34] 2025-07-27 06:26:57,568 | INFO     | this job has now completed (state=finished)
[2025-07-27 02:27:34] 2025-07-27 06:26:57,568 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 02:27:34] 2025-07-27 06:26:57,568 | INFO     | log transfer has been attempted: DONE
[2025-07-27 02:27:34] 2025-07-27 06:26:57,569 | INFO     | job 6745835437 has finished - writing final server update
[2025-07-27 02:27:34] 2025-07-27 06:26:57,569 | INFO     | total number of processed events: 400 (read)
[2025-07-27 02:27:34] 2025-07-27 06:26:57,570 | INFO     | executing command: lscpu
[2025-07-27 02:27:34] 2025-07-27 06:26:57,622 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 02:27:34] 2025-07-27 06:26:57,713 | INFO     | number of running child processes to parent process 630939: 1
[2025-07-27 02:27:34] 2025-07-27 06:26:57,713 | INFO     | maximum number of monitored processes: 6
[2025-07-27 02:27:34] 2025-07-27 06:26:58,098 | INFO     | PID=622587 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 02:27:34] 2025-07-27 06:26:58,099 | INFO     | .. there are 12 such processes running
[2025-07-27 02:27:34] 2025-07-27 06:27:00,216 | INFO     | monitor loop #382: job 0:6745835437 is in state 'finished'
[2025-07-27 02:27:34] 2025-07-27 06:27:00,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 02:27:34] 2025-07-27 06:27:02,159 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 02:27:34] 2025-07-27 06:27:02,163 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2690.4081249999995
[2025-07-27 02:27:34] 2025-07-27 06:27:02,173 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745835437/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 02:27:34] 2025-07-27 06:27:02,174 | INFO     | extracted standard info from prmon json
[2025-07-27 02:27:34] 2025-07-27 06:27:02,174 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 02:27:34] 2025-07-27 06:27:02,174 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 02:27:34] 2025-07-27 06:27:02,175 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 02:27:34] 2025-07-27 06:27:02,175 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 02:27:34] 2025-07-27 06:27:02,177 | INFO     | fitting pss+swap vs Time
[2025-07-27 02:27:34] 2025-07-27 06:27:02,177 | INFO     | sum of square deviations: 141539398.0
[2025-07-27 02:27:34] 2025-07-27 06:27:02,177 | INFO     | sum of deviations: -3340998914.0
[2025-07-27 02:27:34] 2025-07-27 06:27:02,177 | INFO     | mean x: 1753595127.0
[2025-07-27 02:27:34] 2025-07-27 06:27:02,177 | INFO     | mean y: 2445835.675324675
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | -- intersect: 41395580875.73457
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | intersect: 41395580875.73457
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | chi2: 0.10055179482791232
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | -- intersect: 41395580875.73457
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | current memory leak: -23.60 B/s (using 77 data points, chi2=0.10)
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | could have reported an average CPU frequency of 2710 MHz (6 samples)
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | ..............................
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | . Timing measurements:
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | . get job = 0 s
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | . initial setup = 2 s
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | . payload setup = 6 s
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | . stage-in = 0 s
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | . payload execution = 5107 s
[2025-07-27 02:27:34] 2025-07-27 06:27:02,178 | INFO     | . stage-out = 0 s
[2025-07-27 02:27:34] 2025-07-27 06:27:02,179 | INFO     | . log creation = 0 s
[2025-07-27 02:27:34] 2025-07-27 06:27:02,179 | INFO     | ..............................
[2025-07-27 02:27:34] 2025-07-27 06:27:02,254 | INFO     | 
[2025-07-27 02:27:34] 2025-07-27 06:27:02,254 | INFO     | job summary report
[2025-07-27 02:27:34] 2025-07-27 06:27:02,254 | INFO     | --------------------------------------------------
[2025-07-27 02:27:34] 2025-07-27 06:27:02,254 | INFO     | PanDA job id: 6745835437
[2025-07-27 02:27:34] 2025-07-27 06:27:02,254 | INFO     | task id: 45759139
[2025-07-27 02:27:34] 2025-07-27 06:27:02,254 | INFO     | errors: (none)
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | pilot state: finished 
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | transexitcode: 0
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | exeerrorcode: 0
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | exeerrordiag: 
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | exitcode: 0
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | exitmsg: OK
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | cpuconsumptiontime: 56192 s
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | nevents: 400
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | neventsw: 0
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | pid: 630939
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | pgrp: 630939
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | corecount: 12
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | event service: False
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | sizes: {0: 2397388, 1: 2397587, 5: 2397849, 11: 2397905, 5118: 2424316, 5119: 2433314, 5123: 2433498, 5129: 2433692}
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | --------------------------------------------------
[2025-07-27 02:27:34] 2025-07-27 06:27:02,255 | INFO     | 
[2025-07-27 02:27:34] 2025-07-27 06:27:02,256 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 02:27:34] 2025-07-27 06:27:02,274 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,275 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | job 6745835437 has completed (purged errors)
[2025-07-27 02:27:34] 2025-07-27 06:27:02,276 | INFO     | overall cleanup function is called
[2025-07-27 02:27:34] 2025-07-27 06:27:03,284 | INFO     | --- collectZombieJob: --- 10, [630939]
[2025-07-27 02:27:34] 2025-07-27 06:27:03,284 | INFO     | zombie collector waiting for pid 630939
[2025-07-27 02:27:34] 2025-07-27 06:27:03,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 02:27:34] 2025-07-27 06:27:03,284 | INFO     | collected zombie processes
[2025-07-27 02:27:34] 2025-07-27 06:27:03,285 | INFO     | will attempt to kill all subprocesses of pid=630939
[2025-07-27 02:27:34] 2025-07-27 06:27:03,537 | INFO     | process IDs to be killed: [630939] (in reverse order)
[2025-07-27 02:27:34] 2025-07-27 06:27:03,626 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 02:27:34] 2025-07-27 06:27:03,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 02:27:34] 2025-07-27 06:27:03,638 | INFO     | did not find any defunct processes belonging to 630939
[2025-07-27 02:27:34] 2025-07-27 06:27:03,648 | INFO     | did not find any defunct processes belonging to 630939
[2025-07-27 02:27:34] 2025-07-27 06:27:03,649 | INFO     | ready for new job
[2025-07-27 02:27:34] 2025-07-27 06:27:03,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 02:27:34] 2025-07-27 06:27:03,650 | INFO     | ***************************************
[2025-07-27 02:27:34] 2025-07-27 06:27:03,650 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 02:27:34] 2025-07-27 06:27:03,650 | INFO     | ***************************************
[2025-07-27 02:27:34] 2025-07-27 06:27:03,651 | INFO     | 
[2025-07-27 02:27:34] 2025-07-27 06:27:03,666 | INFO     | architecture information:
[2025-07-27 02:27:34] 2025-07-27 06:27:03,666 | INFO     | executing command: cat /etc/os-release
[2025-07-27 02:27:34] 2025-07-27 06:27:03,680 | INFO     | cat /etc/os-release:
[2025-07-27 02:27:34] NAME="CentOS Linux"
[2025-07-27 02:27:34] VERSION="7 (Core)"
[2025-07-27 02:27:34] ID="centos"
[2025-07-27 02:27:34] ID_LIKE="rhel fedora"
[2025-07-27 02:27:34] VERSION_ID="7"
[2025-07-27 02:27:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 02:27:34] ANSI_COLOR="0;31"
[2025-07-27 02:27:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 02:27:34] HOME_URL="https://www.centos.org/"
[2025-07-27 02:27:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 02:27:34] 
[2025-07-27 02:27:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 02:27:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 02:27:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 02:27:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 02:27:34] 
[2025-07-27 02:27:34] 2025-07-27 06:27:03,681 | INFO     | ***************************************
[2025-07-27 02:27:34] 2025-07-27 06:27:04,183 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 02:27:34] 2025-07-27 06:27:04,198 | INFO     | sufficient remaining disk space (76402393088 B)
[2025-07-27 02:27:34] 2025-07-27 06:27:04,199 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 02:27:34] 2025-07-27 06:27:04,199 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 02:27:34] 2025-07-27 06:27:04,199 | INFO     | update_server=False
[2025-07-27 02:27:34] 2025-07-27 06:27:04,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 02:27:34] 2025-07-27 06:27:04,199 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:27:34] 2025-07-27 06:27:04,200 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:27:34] 2025-07-27 06:27:04,200 | INFO     | aborting loop
[2025-07-27 02:27:34] 2025-07-27 06:27:04,607 | INFO     | all job control threads have been joined
[2025-07-27 02:27:34] 2025-07-27 06:27:05,023 | INFO     | all payload control threads have been joined
[2025-07-27 02:27:34] 2025-07-27 06:27:05,024 | INFO     | all data control threads have been joined
[2025-07-27 02:27:34] 2025-07-27 06:27:05,204 | INFO     | [job] queue monitor thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:05,205 | INFO     | [job] retrieve thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:05,205 | INFO     | [job] job monitor thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:05,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 02:27:34] 2025-07-27 06:27:05,612 | INFO     | [job] control thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:05,885 | INFO     | [payload] failed_post thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:05,959 | INFO     | [data] copytool_in thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:05,984 | INFO     | [job] validate thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:06,028 | INFO     | [payload] control thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:06,029 | INFO     | [data] control thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:06,050 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:06,178 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:06,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 02:27:34] 2025-07-27 06:27:06,567 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:06,607 | INFO     | [payload] validate_post thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:07,411 | INFO     | [data] copytool_out thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:10,251 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:14,281 | INFO     | job.realtimelogging is not enabled
[2025-07-27 02:27:34] 2025-07-27 06:27:15,286 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 02:27:34] 2025-07-27 06:27:16,425 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140586881640256)>', '<ExcThread(monitor, started 140586090755840)>']
[2025-07-27 02:27:34] 2025-07-27 06:27:21,450 | INFO     | all workflow threads have been joined
[2025-07-27 02:27:34] 2025-07-27 06:27:21,450 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 02:27:34] 2025-07-27 06:27:21,451 | INFO     | traces error code: 0
[2025-07-27 02:27:34] 2025-07-27 06:27:21,451 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 02:27:34] 2025-07-27 06:27:33,169 | INFO     | 5147s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 02:27:34] 2025-07-27 06:27:34,542 | INFO     | PID=622587 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 02:27:34] 2025-07-27 06:27:34,542 | INFO     | .. there are 12 such processes running
[2025-07-27 02:27:34] 2025-07-27 06:27:34,542 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 02:27:34] 2025-07-27 06:27:34,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 02:27:34] 2025-07-27 06:27:34,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 02:27:34] 2025-07-27 06:27:34,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 02:27:34] 2025-07-27 06:27:34,543 | INFO     | [monitor] control thread has ended
[2025-07-27 02:27:34] 2025-07-27 06:27:34,698 [wrapper] ==== pilot stdout END ====
[2025-07-27 02:27:34] 2025-07-27 06:27:34,700 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 02:27:34] 2025-07-27 06:27:34,703 [wrapper] pilotpid: 622587
[2025-07-27 02:27:34] 2025-07-27 06:27:34,706 [wrapper] Pilot exit status: 0
[2025-07-27 02:27:34] 2025-07-27 06:27:34,718 [wrapper] pandaids: 6745835437
[2025-07-27 02:27:34] 2025-07-27 06:27:34,780 [wrapper] cleanup supervisor_pilot  881209 622588
[2025-07-27 02:27:34] 2025-07-27 06:27:34,783 [wrapper] Test setup, not cleaning
[2025-07-27 02:27:34] 2025-07-27 06:27:34,786 [wrapper] apfmon messages muted
[2025-07-27 02:27:34] 2025-07-27 06:27:34,789 [wrapper] ==== wrapper stdout END ====
[2025-07-27 02:27:34] 2025-07-27 06:27:34,792 [wrapper] ==== wrapper stderr END ====
[2025-07-27 02:27:34]  *** Error codes and diagnostics ***
[2025-07-27 02:27:34]     "exeErrorCode": 0,
[2025-07-27 02:27:34]     "exeErrorDiag": "",
[2025-07-27 02:27:34]     "pilotErrorCode": 0,
[2025-07-27 02:27:34]     "pilotErrorDiag": "",
[2025-07-27 02:27:34]  *** Listing of results directory ***
[2025-07-27 02:27:34] total 396372
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 18:18 pilot3.tar.gz
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 18:33 queuedata.json
[2025-07-27 02:27:34] -rwx------. 1 boincer umatlas     36292 Jul 26 18:34 runpilot2-wrapper.sh
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas       100 Jul 27 01:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 02:27:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 01:01 run_atlas
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas       105 Jul 27 01:01 job.xml
[2025-07-27 02:27:34] -rw-r--r--. 2 boincer umatlas 229977452 Jul 27 01:01 EVNT.45759133._000001.pool.root.1
[2025-07-27 02:27:34] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:01 start_atlas.sh
[2025-07-27 02:27:34] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 01:01 shared
[2025-07-27 02:27:34] -rw-r--r--. 2 boincer umatlas    542902 Jul 27 01:01 input.tar.gz
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas         0 Jul 27 01:01 boinc_lockfile
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas      2651 Jul 27 01:01 pandaJob.out
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas    980125 Jul 27 01:01 agis_schedconf.cvmfs.json
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas   1593052 Jul 27 01:01 agis_ddmendpoints.agis.ALL.json
[2025-07-27 02:27:34] drwx------. 4 boincer umatlas      4096 Jul 27 01:01 pilot3
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas      6843 Jul 27 02:21 init_data.xml
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas 170269080 Jul 27 02:26 HITS.45759139._000013.pool.root.1
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas       529 Jul 27 02:26 boinc_task_state.xml
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas      1038 Jul 27 02:26 memory_monitor_summary.json
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas    373918 Jul 27 02:26 log.45759139._000013.job.log.tgz.1
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas        95 Jul 27 02:26 pilot_heartbeat.json
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas      7822 Jul 27 02:27 heartbeat.json
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 02:27 boinc_mmap_file
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas        27 Jul 27 02:27 wrapper_checkpoint.txt
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas       937 Jul 27 02:27 pilotlog.txt
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas    504635 Jul 27 02:27 log.45759139._000013.job.log.1
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas       357 Jul 27 02:27 output.list
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas       620 Jul 27 02:27 runtime_log
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas    901120 Jul 27 02:27 result.tar.gz
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 02:27 runtime_log.err
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas       655 Jul 27 02:27 PbZLDmMe2z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmhY1KDmmkYJun.diag
[2025-07-27 02:27:34] -rw-r--r--. 1 boincer umatlas     21988 Jul 27 02:27 stderr.txt
[2025-07-27 02:27:34] HITS file was successfully produced:
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas 170269080 Jul 27 02:26 shared/HITS.pool.root.1
[2025-07-27 02:27:34]  *** Contents of shared directory: ***
[2025-07-27 02:27:34] total 392304
[2025-07-27 02:27:34] -rw-r--r--. 2 boincer umatlas 229977452 Jul 27 01:01 ATLAS.root_0
[2025-07-27 02:27:34] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 01:01 start_atlas.sh
[2025-07-27 02:27:34] -rw-r--r--. 2 boincer umatlas    542902 Jul 27 01:01 input.tar.gz
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas 170269080 Jul 27 02:26 HITS.pool.root.1
[2025-07-27 02:27:34] -rw-------. 1 boincer umatlas    901120 Jul 27 02:27 result.tar.gz
02:27:36 (618960): run_atlas exited; CPU time 56299.861268
02:27:36 (618960): called boinc_finish(0)

</stderr_txt>
]]>

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