Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:50:46 (553134): wrapper (7.7.26015): starting
23:50:46 (553134): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 23:50:46] Arguments: --nthreads 8
[2025-07-26 23:50:46] Threads: 8
[2025-07-26 23:50:46] Checking for CVMFS
[2025-07-26 23:50:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 23:50:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 23:50:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 23:50:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 23:50:46] 2.13.1.0 375772 13898 232896 148799 3 196 35387448 40960000 10233 16776704 0 69166845 99.753 69950854 40672 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 23:50:46] CVMFS is ok
[2025-07-26 23:50:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 23:50:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 23:50:46] Further information can be found at the LHC@home message board.
[2025-07-26 23:50:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 23:50:46] Checking for apptainer binary...
[2025-07-26 23:50:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 23:50:46] Running /usr/bin/apptainer --version
[2025-07-26 23:50:46] apptainer version 1.4.1-1.el9
[2025-07-26 23:50:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 23:50:46] c-212-1.aglt2.org
[2025-07-26 23:50:46] apptainer works
[2025-07-26 23:50:46] Set ATHENA_PROC_NUMBER=8
[2025-07-26 23:50:46] Set ATHENA_CORE_NUMBER=8
[2025-07-26 23:50:46] Starting ATLAS job with PandaID=6745835580
[2025-07-26 23:50:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 01:18:49]  *** The last 200 lines of the pilot log: ***
[2025-07-27 01:18:49]  is_tar=False
[2025-07-27 01:18:49]  lfn=log.45758324._000029.job.log.tgz.1
[2025-07-27 01:18:49]  mtime=0
[2025-07-27 01:18:49]  protocol_id=None
[2025-07-27 01:18:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 01:18:49]  replicas=None
[2025-07-27 01:18:49]  scope=mc23_13p6TeV
[2025-07-27 01:18:49]  status=None
[2025-07-27 01:18:49]  status_code=0
[2025-07-27 01:18:49]  storage_token=
[2025-07-27 01:18:49]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745835580/log.45758324._000029.job.log.tgz.1
[2025-07-27 01:18:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/78/log.45758324._000029.job.log.tgz.1
[2025-07-27 01:18:49]  workdir=None
[2025-07-27 01:18:49] ]
[2025-07-27 01:18:49] 2025-07-27 05:18:10,538 | INFO     | transferring file log.45758324._000029.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745835580/log.45758324._000029.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 01:18:49] 2025-07-27 05:18:10,538 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745835580/log.45758324._000029.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758324._000029.job
[2025-07-27 01:18:49] 2025-07-27 05:18:10,556 | INFO     | adding to output.list: log.45758324._000029.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/78/log.45758324._000029.job.log.tg
[2025-07-27 01:18:49] 2025-07-27 05:18:10,557 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 01:18:49] 2025-07-27 05:18:10,557 | INFO     | summary of transferred files:
[2025-07-27 01:18:49] 2025-07-27 05:18:10,557 | INFO     |  -- lfn=log.45758324._000029.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 01:18:49] 2025-07-27 05:18:10,557 | INFO     | stage-out finished correctly
[2025-07-27 01:18:49] 2025-07-27 05:18:10,997 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 01:18:49] 2025-07-27 05:18:11,078 | INFO     | job 6745835580 has state=finished
[2025-07-27 01:18:49] 2025-07-27 05:18:11,078 | INFO     | preparing for final server update for job 6745835580 in state='finished'
[2025-07-27 01:18:49] 2025-07-27 05:18:11,079 | INFO     | this job has now completed (state=finished)
[2025-07-27 01:18:49] 2025-07-27 05:18:11,079 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 01:18:49] 2025-07-27 05:18:11,079 | INFO     | log transfer has been attempted: DONE
[2025-07-27 01:18:49] 2025-07-27 05:18:11,079 | INFO     | job 6745835580 has finished - writing final server update
[2025-07-27 01:18:49] 2025-07-27 05:18:11,080 | INFO     | total number of processed events: 400 (read)
[2025-07-27 01:18:49] 2025-07-27 05:18:11,080 | INFO     | executing command: lscpu
[2025-07-27 01:18:49] 2025-07-27 05:18:11,143 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 01:18:49] 2025-07-27 05:18:13,666 | WARNING  | process 563123 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 01:18:49] 2025-07-27 05:18:13,666 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745835580/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 01:18:49] 2025-07-27 05:18:14,035 | INFO     | number of running child processes to parent process 563123: 1
[2025-07-27 01:18:49] 2025-07-27 05:18:14,035 | INFO     | maximum number of monitored processes: 6
[2025-07-27 01:18:49] 2025-07-27 05:18:15,521 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 01:18:49] 2025-07-27 05:18:15,527 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3261.7086249999998
[2025-07-27 01:18:49] 2025-07-27 05:18:15,540 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745835580/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 01:18:49] 2025-07-27 05:18:15,541 | INFO     | extracted standard info from prmon json
[2025-07-27 01:18:49] 2025-07-27 05:18:15,541 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 01:18:49] 2025-07-27 05:18:15,541 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 01:18:49] 2025-07-27 05:18:15,541 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 01:18:49] 2025-07-27 05:18:15,541 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 01:18:49] 2025-07-27 05:18:15,543 | INFO     | fitting pss+swap vs Time
[2025-07-27 01:18:49] 2025-07-27 05:18:15,543 | INFO     | sum of square deviations: 152858680.0
[2025-07-27 01:18:49] 2025-07-27 05:18:15,544 | INFO     | sum of deviations: 131991677.99999993
[2025-07-27 01:18:49] 2025-07-27 05:18:15,544 | INFO     | mean x: 1753590970.0
[2025-07-27 01:18:49] 2025-07-27 05:18:15,544 | INFO     | mean y: 2528025.189873418
[2025-07-27 01:18:49] 2025-07-27 05:18:15,544 | INFO     | -- intersect: -1511677217.5608003
[2025-07-27 01:18:49] 2025-07-27 05:18:15,544 | INFO     | intersect: -1511677217.5608003
[2025-07-27 01:18:49] 2025-07-27 05:18:15,544 | INFO     | chi2: 0.0017580849260565466
[2025-07-27 01:18:49] 2025-07-27 05:18:15,544 | INFO     | -- intersect: -1511677217.5608003
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | current memory leak: 0.86 B/s (using 79 data points, chi2=0.00)
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | could have reported an average CPU frequency of 3280 MHz (6 samples)
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | ..............................
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | . Timing measurements:
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | . get job = 0 s
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | . initial setup = 2 s
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | . payload setup = 7 s
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | . stage-in = 0 s
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | . payload execution = 5204 s
[2025-07-27 01:18:49] 2025-07-27 05:18:15,545 | INFO     | . stage-out = 0 s
[2025-07-27 01:18:49] 2025-07-27 05:18:15,546 | INFO     | . log creation = 0 s
[2025-07-27 01:18:49] 2025-07-27 05:18:15,546 | INFO     | ..............................
[2025-07-27 01:18:49] 2025-07-27 05:18:16,089 | INFO     | 
[2025-07-27 01:18:49] 2025-07-27 05:18:16,090 | INFO     | job summary report
[2025-07-27 01:18:49] 2025-07-27 05:18:16,090 | INFO     | --------------------------------------------------
[2025-07-27 01:18:49] 2025-07-27 05:18:16,090 | INFO     | PanDA job id: 6745835580
[2025-07-27 01:18:49] 2025-07-27 05:18:16,090 | INFO     | task id: 45758324
[2025-07-27 01:18:49] 2025-07-27 05:18:16,090 | INFO     | errors: (none)
[2025-07-27 01:18:49] 2025-07-27 05:18:16,090 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 01:18:49] 2025-07-27 05:18:16,090 | INFO     | pilot state: finished 
[2025-07-27 01:18:49] 2025-07-27 05:18:16,091 | INFO     | transexitcode: 0
[2025-07-27 01:18:49] 2025-07-27 05:18:16,091 | INFO     | exeerrorcode: 0
[2025-07-27 01:18:49] 2025-07-27 05:18:16,091 | INFO     | exeerrordiag: 
[2025-07-27 01:18:49] 2025-07-27 05:18:16,091 | INFO     | exitcode: 0
[2025-07-27 01:18:49] 2025-07-27 05:18:16,091 | INFO     | exitmsg: OK
[2025-07-27 01:18:49] 2025-07-27 05:18:16,091 | INFO     | cpuconsumptiontime: 36679 s
[2025-07-27 01:18:49] 2025-07-27 05:18:16,091 | INFO     | nevents: 400
[2025-07-27 01:18:49] 2025-07-27 05:18:16,091 | INFO     | neventsw: 0
[2025-07-27 01:18:49] 2025-07-27 05:18:16,091 | INFO     | pid: 563123
[2025-07-27 01:18:49] 2025-07-27 05:18:16,092 | INFO     | pgrp: 563123
[2025-07-27 01:18:49] 2025-07-27 05:18:16,092 | INFO     | corecount: 8
[2025-07-27 01:18:49] 2025-07-27 05:18:16,092 | INFO     | event service: False
[2025-07-27 01:18:49] 2025-07-27 05:18:16,092 | INFO     | sizes: {0: 2397237, 1: 2397436, 5: 2397698, 11: 2397754, 5216: 2423998, 5218: 2433180, 5223: 2433318}
[2025-07-27 01:18:49] 2025-07-27 05:18:16,092 | INFO     | --------------------------------------------------
[2025-07-27 01:18:49] 2025-07-27 05:18:16,092 | INFO     | 
[2025-07-27 01:18:49] 2025-07-27 05:18:16,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 01:18:49] 2025-07-27 05:18:16,114 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,114 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,115 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,115 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,115 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,116 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,116 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,116 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 01:18:49] 2025-07-27 05:18:16,116 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,117 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 01:18:49] 2025-07-27 05:18:16,117 | INFO     | job 6745835580 has completed (purged errors)
[2025-07-27 01:18:49] 2025-07-27 05:18:16,117 | INFO     | overall cleanup function is called
[2025-07-27 01:18:49] 2025-07-27 05:18:16,357 | INFO     | PID=556715 has CPU usage=13.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 01:18:49] 2025-07-27 05:18:16,357 | INFO     | .. there are 13 such processes running
[2025-07-27 01:18:49] 2025-07-27 05:18:17,126 | INFO     | --- collectZombieJob: --- 10, [563123]
[2025-07-27 01:18:49] 2025-07-27 05:18:17,126 | INFO     | zombie collector waiting for pid 563123
[2025-07-27 01:18:49] 2025-07-27 05:18:17,126 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 01:18:49] 2025-07-27 05:18:17,126 | INFO     | collected zombie processes
[2025-07-27 01:18:49] 2025-07-27 05:18:17,127 | INFO     | will attempt to kill all subprocesses of pid=563123
[2025-07-27 01:18:49] 2025-07-27 05:18:17,495 | INFO     | process IDs to be killed: [563123] (in reverse order)
[2025-07-27 01:18:49] 2025-07-27 05:18:17,611 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 01:18:49] 2025-07-27 05:18:17,611 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 01:18:49] 2025-07-27 05:18:17,625 | INFO     | did not find any defunct processes belonging to 563123
[2025-07-27 01:18:49] 2025-07-27 05:18:17,635 | INFO     | did not find any defunct processes belonging to 563123
[2025-07-27 01:18:49] 2025-07-27 05:18:17,635 | INFO     | ready for new job
[2025-07-27 01:18:49] 2025-07-27 05:18:17,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 01:18:49] 2025-07-27 05:18:17,637 | INFO     | ***************************************
[2025-07-27 01:18:49] 2025-07-27 05:18:17,638 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 01:18:49] 2025-07-27 05:18:17,639 | INFO     | ***************************************
[2025-07-27 01:18:49] 2025-07-27 05:18:17,639 | INFO     | 
[2025-07-27 01:18:49] 2025-07-27 05:18:17,644 | INFO     | architecture information:
[2025-07-27 01:18:49] 2025-07-27 05:18:17,644 | INFO     | executing command: cat /etc/os-release
[2025-07-27 01:18:49] 2025-07-27 05:18:17,661 | INFO     | cat /etc/os-release:
[2025-07-27 01:18:49] NAME="CentOS Linux"
[2025-07-27 01:18:49] VERSION="7 (Core)"
[2025-07-27 01:18:49] ID="centos"
[2025-07-27 01:18:49] ID_LIKE="rhel fedora"
[2025-07-27 01:18:49] VERSION_ID="7"
[2025-07-27 01:18:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 01:18:49] ANSI_COLOR="0;31"
[2025-07-27 01:18:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 01:18:49] HOME_URL="https://www.centos.org/"
[2025-07-27 01:18:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 01:18:49] 
[2025-07-27 01:18:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 01:18:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 01:18:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 01:18:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 01:18:49] 
[2025-07-27 01:18:49] 2025-07-27 05:18:17,661 | INFO     | ***************************************
[2025-07-27 01:18:49] 2025-07-27 05:18:18,164 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 01:18:49] 2025-07-27 05:18:18,183 | INFO     | sufficient remaining disk space (123490795520 B)
[2025-07-27 01:18:49] 2025-07-27 05:18:18,183 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 01:18:49] 2025-07-27 05:18:18,183 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 01:18:49] 2025-07-27 05:18:18,184 | INFO     | update_server=False
[2025-07-27 01:18:49] 2025-07-27 05:18:18,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 01:18:49] 2025-07-27 05:18:18,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:18:49] 2025-07-27 05:18:18,184 | INFO     | aborting loop
[2025-07-27 01:18:49] 2025-07-27 05:18:18,565 | INFO     | all payload control threads have been joined
[2025-07-27 01:18:49] 2025-07-27 05:18:18,650 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 01:18:49] 2025-07-27 05:18:18,654 | INFO     | all data control threads have been joined
[2025-07-27 01:18:49] 2025-07-27 05:18:19,189 | INFO     | [job] retrieve thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:19,190 | INFO     | [job] job monitor thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:19,432 | INFO     | [payload] validate_post thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:19,445 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:19,562 | INFO     | all job control threads have been joined
[2025-07-27 01:18:49] 2025-07-27 05:18:19,566 | INFO     | [payload] control thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:19,659 | INFO     | [data] control thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:19,932 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:19,993 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:20,162 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:20,323 | INFO     | [job] validate thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:20,360 | INFO     | [payload] failed_post thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:20,433 | INFO     | [data] copytool_in thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:20,568 | INFO     | [job] control thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:20,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:18:49] 2025-07-27 05:18:20,655 | INFO     | [data] copytool_out thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:21,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 01:18:49] 2025-07-27 05:18:21,647 | INFO     | [job] queue monitor thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:25,599 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 01:18:49] 2025-07-27 05:18:25,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033997899584)>', '<ExcThread(monitor, started 140033365366528)>']
[2025-07-27 01:18:49] 2025-07-27 05:18:30,794 | INFO     | all workflow threads have been joined
[2025-07-27 01:18:49] 2025-07-27 05:18:30,795 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 01:18:49] 2025-07-27 05:18:30,795 | INFO     | traces error code: 0
[2025-07-27 01:18:49] 2025-07-27 05:18:30,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 01:18:49] 2025-07-27 05:18:48,731 | INFO     | PID=556715 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 01:18:49] 2025-07-27 05:18:48,732 | INFO     | .. there are 13 such processes running
[2025-07-27 01:18:49] 2025-07-27 05:18:48,732 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 01:18:49] 2025-07-27 05:18:48,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 01:18:49] 2025-07-27 05:18:48,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 01:18:49] 2025-07-27 05:18:48,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 01:18:49] 2025-07-27 05:18:48,732 | INFO     | [monitor] control thread has ended
[2025-07-27 01:18:49] 2025-07-27 05:18:48,859 [wrapper] ==== pilot stdout END ====
[2025-07-27 01:18:49] 2025-07-27 05:18:48,862 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 01:18:49] 2025-07-27 05:18:48,865 [wrapper] pilotpid: 556715
[2025-07-27 01:18:49] 2025-07-27 05:18:48,868 [wrapper] Pilot exit status: 0
[2025-07-27 01:18:49] 2025-07-27 05:18:48,882 [wrapper] pandaids: 6745835580
[2025-07-27 01:18:49] 2025-07-27 05:18:48,961 [wrapper] cleanup supervisor_pilot  835654 556716
[2025-07-27 01:18:49] 2025-07-27 05:18:48,964 [wrapper] Test setup, not cleaning
[2025-07-27 01:18:49] 2025-07-27 05:18:48,967 [wrapper] apfmon messages muted
[2025-07-27 01:18:49] 2025-07-27 05:18:48,969 [wrapper] ==== wrapper stdout END ====
[2025-07-27 01:18:49] 2025-07-27 05:18:48,972 [wrapper] ==== wrapper stderr END ====
[2025-07-27 01:18:49]  *** Error codes and diagnostics ***
[2025-07-27 01:18:49]     "exeErrorCode": 0,
[2025-07-27 01:18:49]     "exeErrorDiag": "",
[2025-07-27 01:18:49]     "pilotErrorCode": 0,
[2025-07-27 01:18:49]     "pilotErrorDiag": "",
[2025-07-27 01:18:49]  *** Listing of results directory ***
[2025-07-27 01:18:49] total 418760
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 18:38 queuedata.json
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 18:38 pilot3.tar.gz
[2025-07-27 01:18:49] -rwx------. 1 boincer umatlas     36292 Jul 26 18:39 runpilot2-wrapper.sh
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas       100 Jul 26 23:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 01:18:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 23:50 run_atlas
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas       105 Jul 26 23:50 job.xml
[2025-07-27 01:18:49] -rw-r--r--. 2 boincer umatlas 245971700 Jul 26 23:50 EVNT.45758322._000002.pool.root.1
[2025-07-27 01:18:49] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 23:50 start_atlas.sh
[2025-07-27 01:18:49] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 23:50 shared
[2025-07-27 01:18:49] -rw-r--r--. 2 boincer umatlas    542876 Jul 26 23:50 input.tar.gz
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas         0 Jul 26 23:50 boinc_lockfile
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas      2551 Jul 26 23:50 pandaJob.out
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas    980125 Jul 26 23:50 agis_schedconf.cvmfs.json
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas   1593052 Jul 26 23:50 agis_ddmendpoints.agis.ALL.json
[2025-07-27 01:18:49] drwx------. 4 boincer umatlas      4096 Jul 26 23:50 pilot3
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 01:09 init_data.xml
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas       529 Jul 27 01:17 boinc_task_state.xml
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas 177357969 Jul 27 01:17 HITS.45758324._000029.pool.root.1
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas        95 Jul 27 01:17 pilot_heartbeat.json
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas      1028 Jul 27 01:18 memory_monitor_summary.json
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas    298541 Jul 27 01:18 log.45758324._000029.job.log.tgz.1
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas      7750 Jul 27 01:18 heartbeat.json
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas        27 Jul 27 01:18 wrapper_checkpoint.txt
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 01:18 boinc_mmap_file
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas       822 Jul 27 01:18 pilotlog.txt
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas    505659 Jul 27 01:18 log.45758324._000029.job.log.1
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas       357 Jul 27 01:18 output.list
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas       620 Jul 27 01:18 runtime_log
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas    819200 Jul 27 01:18 result.tar.gz
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 01:18 runtime_log.err
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas       651 Jul 27 01:18 k2qLDmEj2z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuMTLDmtZaZJm.diag
[2025-07-27 01:18:49] -rw-r--r--. 1 boincer umatlas     21659 Jul 27 01:18 stderr.txt
[2025-07-27 01:18:49] HITS file was successfully produced:
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas 177357969 Jul 27 01:17 shared/HITS.pool.root.1
[2025-07-27 01:18:49]  *** Contents of shared directory: ***
[2025-07-27 01:18:49] total 414768
[2025-07-27 01:18:49] -rw-r--r--. 2 boincer umatlas 245971700 Jul 26 23:50 ATLAS.root_0
[2025-07-27 01:18:49] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 23:50 start_atlas.sh
[2025-07-27 01:18:49] -rw-r--r--. 2 boincer umatlas    542876 Jul 26 23:50 input.tar.gz
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas 177357969 Jul 27 01:17 HITS.pool.root.1
[2025-07-27 01:18:49] -rw-------. 1 boincer umatlas    819200 Jul 27 01:18 result.tar.gz
01:18:50 (553134): run_atlas exited; CPU time 36799.298237
01:18:50 (553134): called boinc_finish(0)

</stderr_txt>
]]>

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