Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:50:05 (823774): wrapper (7.7.26015): starting
20:50:05 (823774): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 20:50:05] Arguments: --nthreads 12
[2025-07-26 20:50:05] Threads: 12
[2025-07-26 20:50:05] Checking for CVMFS
[2025-07-26 20:50:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 20:50:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 20:50:05] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 20:50:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 20:50:05] 2.11.5.0 7126 36623 166164 148799 2 239 38642325 45568000 6505 130560 0 289847769 99.757 210377088 23434 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-07-26 20:50:05] CVMFS is ok
[2025-07-26 20:50:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 20:50:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 20:50:05] Further information can be found at the LHC@home message board.
[2025-07-26 20:50:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 20:50:05] Checking for apptainer binary...
[2025-07-26 20:50:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 20:50:05] Running /usr/bin/apptainer --version
[2025-07-26 20:50:06] apptainer version 1.4.1-1.el9
[2025-07-26 20:50:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 20:50:06] wns0039.triumf.lcg
[2025-07-26 20:50:06] apptainer works
[2025-07-26 20:50:06] Set ATHENA_PROC_NUMBER=12
[2025-07-26 20:50:06] Set ATHENA_CORE_NUMBER=12
[2025-07-26 20:50:06] Starting ATLAS job with PandaID=6745938976
[2025-07-26 20:50:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 20:53:24]  *** The last 200 lines of the pilot log: ***
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | found no stored workdir sizes
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | INFO     | will not add max space = 0 B to job metrics
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | WARNING  | wrong length of table data, x=[1753588236.0], y=[737.0] (must be same and length>=4)
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | could have reported an average CPU frequency of 2553 MHz (4 samples)
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | ..............................
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . Timing measurements:
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . get job = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . initial setup = 2 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . payload setup = 4 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . stage-in = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . payload execution = 14 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . stage-out = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . log creation = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | ..............................
[2025-07-26 20:53:24] 2025-07-27 03:52:51,974 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 20:53:24] 2025-07-27 03:52:51,974 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745938976/pilotlog.txt
[2025-07-26 20:53:24] 2025-07-27 03:52:51,983 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-26 20:53:24] - Log from pilotlog.txt -
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | found no stored workdir sizes
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | INFO     | will not add max space = 0 B to job metrics
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | WARNING  | wrong length of table data, x=[1753588236.0], y=[737.0] (must be same and length>=4)
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | could have reported an average CPU frequency of 2553 MHz (4 samples)
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | ..............................
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . Timing measurements:
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . get job = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . initial setup = 2 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . payload setup = 4 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . stage-in = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . payload execution = 14 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . stage-out = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . log creation = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | ..............................
[2025-07-26 20:53:24] 2025-07-27 03:52:51,974 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 20:53:24] 2025-07-27 03:52:51,974 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745938976/pilotlog.txt
[2025-07-26 20:53:24] 2025-07-27 03:52:51,984 | WARNING  | 
[2025-07-26 20:53:24] [begin log extracts]
[2025-07-26 20:53:24] - Log from pilotlog.txt -
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | WARNING  | found no stored workdir sizes
[2025-07-26 20:53:24] 2025-07-27 03:52:51,972 | INFO     | will not add max space = 0 B to job metrics
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | WARNING  | wrong length of table data, x=[1753588236.0], y=[737.0] (must be same and length>=4)
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | could have reported an average CPU frequency of 2553 MHz (4 samples)
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | ..............................
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . Timing measurements:
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . get job = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . initial setup = 2 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . payload setup = 4 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . stage-in = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . payload execution = 14 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . stage-out = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | . log creation = 0 s
[2025-07-26 20:53:24] 2025-07-27 03:52:51,973 | INFO     | ..............................
[2025-07-26 20:53:24] 2025-07-27 03:52:51,974 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-26 20:53:24] 2025-07-27 03:52:51,974 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6745938976/pilotlog.txt
[2025-07-26 20:53:24] [end log extracts]
[2025-07-26 20:53:24] 2025-07-27 03:52:51,984 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-26 20:53:24] 2025-07-27 03:52:51,985 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-26 20:53:24] 2025-07-27 03:52:52,065 | INFO     | 
[2025-07-26 20:53:24] 2025-07-27 03:52:52,065 | INFO     | job summary report
[2025-07-26 20:53:24] 2025-07-27 03:52:52,065 | INFO     | --------------------------------------------------
[2025-07-26 20:53:24] 2025-07-27 03:52:52,065 | INFO     | PanDA job id: 6745938976
[2025-07-26 20:53:24] 2025-07-27 03:52:52,065 | INFO     | task id: 45758392
[2025-07-26 20:53:24] 2025-07-27 03:52:52,065 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-26 20:50:42,525 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-26 20:53:24] 2025-07-27 03:52:52,065 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | pilot state: failed 
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | transexitcode: 65
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | exeerrorcode: 65
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | exitcode: 65
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | cpuconsumptiontime: 16 s
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | nevents: 0
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | neventsw: 0
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | pid: 839119
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | pgrp: 839119
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | corecount: 12
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | event service: False
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | sizes: {0: 2397290, 1: 2397489, 4: 2397751, 11: 2397779, 22: 2425322, 24: 2425322, 144: 2425616}
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | --------------------------------------------------
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | 
[2025-07-26 20:53:24] 2025-07-27 03:52:52,066 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-26 20:53:24] 2025-07-27 03:52:52,080 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,082 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 20:53:24] 2025-07-27 03:52:52,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,082 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 20:53:24] 2025-07-27 03:52:52,082 | INFO     | job 6745938976 has completed (purged errors)
[2025-07-26 20:53:24] 2025-07-27 03:52:52,082 | INFO     | overall cleanup function is called
[2025-07-26 20:53:24] 2025-07-27 03:52:53,088 | INFO     | --- collectZombieJob: --- 10, [839119]
[2025-07-26 20:53:24] 2025-07-27 03:52:53,088 | INFO     | zombie collector waiting for pid 839119
[2025-07-26 20:53:24] 2025-07-27 03:52:53,088 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 20:53:24] 2025-07-27 03:52:53,088 | INFO     | collected zombie processes
[2025-07-26 20:53:24] 2025-07-27 03:52:53,088 | INFO     | will attempt to kill all subprocesses of pid=839119
[2025-07-26 20:53:24] 2025-07-27 03:52:53,219 | INFO     | process IDs to be killed: [839119] (in reverse order)
[2025-07-26 20:53:24] 2025-07-27 03:52:53,269 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 20:53:24] 2025-07-27 03:52:53,270 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 20:53:24] 2025-07-27 03:52:53,275 | INFO     | did not find any defunct processes belonging to 839119
[2025-07-26 20:53:24] 2025-07-27 03:52:53,279 | INFO     | did not find any defunct processes belonging to 839119
[2025-07-26 20:53:24] 2025-07-27 03:52:53,279 | INFO     | ready for new job
[2025-07-26 20:53:24] 2025-07-27 03:52:53,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 20:53:24] 2025-07-27 03:52:53,281 | INFO     | ***************************************
[2025-07-26 20:53:24] 2025-07-27 03:52:53,281 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 20:53:24] 2025-07-27 03:52:53,281 | INFO     | ***************************************
[2025-07-26 20:53:24] 2025-07-27 03:52:53,281 | INFO     | 
[2025-07-26 20:53:24] 2025-07-27 03:52:53,283 | INFO     | architecture information:
[2025-07-26 20:53:24] 2025-07-27 03:52:53,283 | INFO     | executing command: cat /etc/os-release
[2025-07-26 20:53:24] 2025-07-27 03:52:53,293 | INFO     | cat /etc/os-release:
[2025-07-26 20:53:24] NAME="CentOS Linux"
[2025-07-26 20:53:24] VERSION="7 (Core)"
[2025-07-26 20:53:24] ID="centos"
[2025-07-26 20:53:24] ID_LIKE="rhel fedora"
[2025-07-26 20:53:24] VERSION_ID="7"
[2025-07-26 20:53:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 20:53:24] ANSI_COLOR="0;31"
[2025-07-26 20:53:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 20:53:24] HOME_URL="https://www.centos.org/"
[2025-07-26 20:53:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 20:53:24] 
[2025-07-26 20:53:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 20:53:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 20:53:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 20:53:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 20:53:24] 
[2025-07-26 20:53:24] 2025-07-27 03:52:53,293 | INFO     | ***************************************
[2025-07-26 20:53:24] 2025-07-27 03:52:53,795 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-26 20:53:24] 2025-07-27 03:52:53,806 | INFO     | sufficient remaining disk space (2193644060672 B)
[2025-07-26 20:53:24] 2025-07-27 03:52:53,807 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 20:53:24] 2025-07-27 03:52:53,807 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 20:53:24] 2025-07-27 03:52:53,807 | INFO     | update_server=False
[2025-07-26 20:53:24] 2025-07-27 03:52:53,807 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 20:53:24] 2025-07-27 03:52:53,807 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 20:53:24] 2025-07-27 03:52:53,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 20:53:24] 2025-07-27 03:52:54,126 | INFO     | all job control threads have been joined
[2025-07-26 20:53:24] 2025-07-27 03:52:54,582 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 20:53:24] 2025-07-27 03:52:54,582 | INFO     | aborting loop
[2025-07-26 20:53:24] 2025-07-27 03:52:54,811 | INFO     | all payload control threads have been joined
[2025-07-26 20:53:24] 2025-07-27 03:52:54,812 | INFO     | [job] queue monitor thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:54,812 | INFO     | [job] retrieve thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:54,860 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:54,887 | INFO     | all data control threads have been joined
[2025-07-26 20:53:24] 2025-07-27 03:52:54,946 | INFO     | [data] copytool_in thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:54,990 | INFO     | [payload] validate_post thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:55,131 | INFO     | [job] control thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:55,352 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 20:53:24] 2025-07-27 03:52:55,419 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:55,451 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:55,587 | INFO     | [job] job monitor thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:55,812 | INFO     | [data] copytool_out thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:55,816 | INFO     | [payload] control thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:55,834 | INFO     | [payload] failed_post thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:55,892 | INFO     | [data] control thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:56,115 | INFO     | [job] validate thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:56,245 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:52:59,357 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 20:53:24] 2025-07-27 03:53:00,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139798984865600)>', '<ExcThread(monitor, started 139798232692480)>']
[2025-07-26 20:53:24] 2025-07-27 03:53:05,714 | INFO     | all workflow threads have been joined
[2025-07-26 20:53:24] 2025-07-27 03:53:05,714 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 20:53:24] 2025-07-27 03:53:05,714 | INFO     | traces error code: 0
[2025-07-26 20:53:24] 2025-07-27 03:53:05,715 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 20:53:24] 2025-07-27 03:53:24,445 | INFO     | PID=827636 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 20:53:24] 2025-07-27 03:53:24,446 | INFO     | .. there are 13 such processes running
[2025-07-26 20:53:24] 2025-07-27 03:53:24,446 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 20:53:24] 2025-07-27 03:53:24,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 20:53:24] 2025-07-27 03:53:24,446 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 20:53:24] 2025-07-27 03:53:24,446 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 20:53:24] 2025-07-27 03:53:24,446 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 20:53:24] 2025-07-27 03:53:24,447 | INFO     | [monitor] control thread has ended
[2025-07-26 20:53:24] 2025-07-27 03:53:24,580 [wrapper] ==== pilot stdout END ====
[2025-07-26 20:53:24] 2025-07-27 03:53:24,582 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 20:53:24] 2025-07-27 03:53:24,584 [wrapper] pilotpid: 827636
[2025-07-26 20:53:24] 2025-07-27 03:53:24,586 [wrapper] Pilot exit status: 0
[2025-07-26 20:53:24] 2025-07-27 03:53:24,594 [wrapper] pandaids: 6745938976
[2025-07-26 20:53:24] 2025-07-27 03:53:24,627 [wrapper] cleanup supervisor_pilot  827642 827637
[2025-07-26 20:53:24] 2025-07-27 03:53:24,630 [wrapper] Test setup, not cleaning
[2025-07-26 20:53:24] 2025-07-27 03:53:24,632 [wrapper] apfmon messages muted
[2025-07-26 20:53:24] 2025-07-27 03:53:24,634 [wrapper] ==== wrapper stdout END ====
[2025-07-26 20:53:24] 2025-07-27 03:53:24,636 [wrapper] ==== wrapper stderr END ====
[2025-07-26 20:53:24]  *** Error codes and diagnostics ***
[2025-07-26 20:53:24]     "exeErrorCode": 65,
[2025-07-26 20:53:24]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 20:53:24]     "pilotErrorCode": 1305,
[2025-07-26 20:53:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-26 20:53:24]  *** Listing of results directory ***
[2025-07-26 20:53:24] total 235904
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc    530466 Jul 26 17:36 pilot3.tar.gz
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc      5112 Jul 26 18:03 queuedata.json
[2025-07-26 20:53:24] -rwx------. 1 boinc boinc     36292 Jul 26 18:05 runpilot2-wrapper.sh
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc       100 Jul 26 20:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 20:53:24] -rwxr-xr-x. 1 boinc boinc      7986 Jul 26 20:50 run_atlas
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc       105 Jul 26 20:50 job.xml
[2025-07-26 20:53:24] -rw-r--r--. 2 boinc boinc 237499242 Jul 26 20:50 EVNT.45758390._000002.pool.root.1
[2025-07-26 20:53:24] -rw-r--r--. 2 boinc boinc     15095 Jul 26 20:50 start_atlas.sh
[2025-07-26 20:53:24] drwxrwx--x. 2 boinc boinc      4096 Jul 26 20:50 shared
[2025-07-26 20:53:24] -rw-r--r--. 2 boinc boinc    542879 Jul 26 20:50 input.tar.gz
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc      6596 Jul 26 20:50 init_data.xml
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc         0 Jul 26 20:50 boinc_lockfile
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc      2557 Jul 26 20:50 pandaJob.out
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc    980125 Jul 26 20:50 agis_schedconf.cvmfs.json
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc   1593052 Jul 26 20:50 agis_ddmendpoints.agis.ALL.json
[2025-07-26 20:53:24] drwx------. 4 boinc boinc      4096 Jul 26 20:50 pilot3
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc       956 Jul 26 20:50 memory_monitor_summary.json
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc       522 Jul 26 20:50 boinc_task_state.xml
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc     20210 Jul 26 20:50 log.45758392._000029.job.log.tgz.1
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc      8390 Jul 26 20:52 heartbeat.json
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc        22 Jul 26 20:53 wrapper_checkpoint.txt
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc      8192 Jul 26 20:53 boinc_mmap_file
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc       892 Jul 26 20:53 pilotlog.txt
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc        95 Jul 26 20:53 pilot_heartbeat.json
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc     74280 Jul 26 20:53 log.45758392._000029.job.log.1
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc       188 Jul 26 20:53 output.list
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc       620 Jul 26 20:53 runtime_log
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc    112640 Jul 26 20:53 result.tar.gz
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc      8485 Jul 26 20:53 runtime_log.err
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc       644 Jul 26 20:53 enAMDmE04z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkkTLDmDwjZMo.diag
[2025-07-26 20:53:24] -rw-r--r--. 1 boinc boinc     21615 Jul 26 20:53 stderr.txt
[2025-07-26 20:53:24] No HITS result produced
[2025-07-26 20:53:24]  *** Contents of shared directory: ***
[2025-07-26 20:53:24] total 232600
[2025-07-26 20:53:24] -rw-r--r--. 2 boinc boinc 237499242 Jul 26 20:50 ATLAS.root_0
[2025-07-26 20:53:24] -rw-r--r--. 2 boinc boinc     15095 Jul 26 20:50 start_atlas.sh
[2025-07-26 20:53:24] -rw-r--r--. 2 boinc boinc    542879 Jul 26 20:50 input.tar.gz
[2025-07-26 20:53:24] -rw-------. 1 boinc boinc    112640 Jul 26 20:53 result.tar.gz
20:53:26 (823774): run_atlas exited; CPU time 18.634913
20:53:26 (823774): called boinc_finish(0)

</stderr_txt>
]]>

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