Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:28:57 (24932): wrapper (7.7.26015): starting
23:28:57 (24932): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 23:28:57] Arguments: --nthreads 8
[2025-07-26 23:28:57] Threads: 8
[2025-07-26 23:28:57] Checking for CVMFS
[2025-07-26 23:28:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 23:28:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 23:28:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 23:28:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 23:28:57] 2.11.2.0 3213 516399 243828 148799 3 57 19951581 20275200 917 130560 0 179361205 99.988 22518107 19708 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 23:28:57] CVMFS is ok
[2025-07-26 23:28:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 23:28:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 23:28:57] Further information can be found at the LHC@home message board.
[2025-07-26 23:28:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 23:28:57] Checking for apptainer binary...
[2025-07-26 23:28:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 23:28:57] Running /usr/bin/apptainer --version
[2025-07-26 23:28:57] apptainer version 1.3.2-1.el7
[2025-07-26 23:28:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 23:28:58] c-205-38.aglt2.org
[2025-07-26 23:28:58] apptainer works
[2025-07-26 23:28:58] Set ATHENA_PROC_NUMBER=8
[2025-07-26 23:28:58] Set ATHENA_CORE_NUMBER=8
[2025-07-26 23:28:58] Starting ATLAS job with PandaID=6745938858
[2025-07-26 23:28:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 00:35:23]  *** The last 200 lines of the pilot log: ***
[2025-07-27 00:35:23]  is_altstaged=None
[2025-07-27 00:35:23]  is_tar=False
[2025-07-27 00:35:23]  lfn=log.45758332._000016.job.log.tgz.1
[2025-07-27 00:35:23]  mtime=0
[2025-07-27 00:35:23]  protocol_id=None
[2025-07-27 00:35:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 00:35:23]  replicas=None
[2025-07-27 00:35:23]  scope=mc23_13p6TeV
[2025-07-27 00:35:23]  status=None
[2025-07-27 00:35:23]  status_code=0
[2025-07-27 00:35:23]  storage_token=
[2025-07-27 00:35:23]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6745938858/log.45758332._000016.job.log.tgz.1
[2025-07-27 00:35:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/9f/log.45758332._000016.job.log.tgz.1
[2025-07-27 00:35:23]  workdir=None
[2025-07-27 00:35:23] ]
[2025-07-27 00:35:23] 2025-07-27 04:34:46,037 | INFO     | transferring file log.45758332._000016.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6745938858/log.45758332._000016.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 00:35:23] 2025-07-27 04:34:46,037 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6745938858/log.45758332._000016.job.log.tgz.1 /tmp/boinchome/slots/1/log.45758332._000016.job
[2025-07-27 00:35:23] 2025-07-27 04:34:46,054 | INFO     | adding to output.list: log.45758332._000016.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/9f/log.45758332._000016.job.log.tg
[2025-07-27 00:35:23] 2025-07-27 04:34:46,055 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 00:35:23] 2025-07-27 04:34:46,055 | INFO     | summary of transferred files:
[2025-07-27 00:35:23] 2025-07-27 04:34:46,055 | INFO     |  -- lfn=log.45758332._000016.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 00:35:23] 2025-07-27 04:34:46,056 | INFO     | stage-out finished correctly
[2025-07-27 00:35:23] 2025-07-27 04:34:47,053 | INFO     | monitor loop #296: job 0:6745938858 is in state 'finished'
[2025-07-27 00:35:23] 2025-07-27 04:34:47,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 00:35:23] 2025-07-27 04:34:47,078 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 00:35:23] 2025-07-27 04:34:48,998 | INFO     | job 6745938858 has state=finished
[2025-07-27 00:35:23] 2025-07-27 04:34:48,999 | INFO     | preparing for final server update for job 6745938858 in state='finished'
[2025-07-27 00:35:23] 2025-07-27 04:34:48,999 | INFO     | this job has now completed (state=finished)
[2025-07-27 00:35:23] 2025-07-27 04:34:49,000 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 00:35:23] 2025-07-27 04:34:49,000 | INFO     | log transfer has been attempted: DONE
[2025-07-27 00:35:23] 2025-07-27 04:34:49,000 | INFO     | job 6745938858 has finished - writing final server update
[2025-07-27 00:35:23] 2025-07-27 04:34:49,000 | INFO     | total number of processed events: 400 (read)
[2025-07-27 00:35:23] 2025-07-27 04:34:49,001 | INFO     | executing command: lscpu
[2025-07-27 00:35:23] 2025-07-27 04:34:49,030 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 00:35:23] 2025-07-27 04:34:49,556 | INFO     | monitor loop #297: job 0:6745938858 is in state 'finished'
[2025-07-27 00:35:23] 2025-07-27 04:34:49,556 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 00:35:23] 2025-07-27 04:34:51,432 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 00:35:23] 2025-07-27 04:34:51,436 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2790.9175625000003
[2025-07-27 00:35:23] 2025-07-27 04:34:51,440 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745938858/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 00:35:23] 2025-07-27 04:34:51,441 | INFO     | extracted standard info from prmon json
[2025-07-27 00:35:23] 2025-07-27 04:34:51,441 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 00:35:23] 2025-07-27 04:34:51,442 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 00:35:23] 2025-07-27 04:34:51,442 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 00:35:23] 2025-07-27 04:34:51,442 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 00:35:23] 2025-07-27 04:34:51,444 | INFO     | fitting pss+swap vs Time
[2025-07-27 00:35:23] 2025-07-27 04:34:51,444 | INFO     | sum of square deviations: 60482994.5
[2025-07-27 00:35:23] 2025-07-27 04:34:51,445 | INFO     | sum of deviations: -5409596540.500001
[2025-07-27 00:35:23] 2025-07-27 04:34:51,445 | INFO     | mean x: 1753589008.5
[2025-07-27 00:35:23] 2025-07-27 04:34:51,445 | INFO     | mean y: 2731750.706896552
[2025-07-27 00:35:23] 2025-07-27 04:34:51,445 | INFO     | -- intersect: 156843660548.31177
[2025-07-27 00:35:23] 2025-07-27 04:34:51,445 | INFO     | intersect: 156843660548.31177
[2025-07-27 00:35:23] 2025-07-27 04:34:51,446 | INFO     | chi2: 0.05999651116917157
[2025-07-27 00:35:23] 2025-07-27 04:34:51,446 | INFO     | -- intersect: 156843660548.31177
[2025-07-27 00:35:23] 2025-07-27 04:34:51,446 | INFO     | current memory leak: -89.44 B/s (using 58 data points, chi2=0.06)
[2025-07-27 00:35:23] 2025-07-27 04:34:51,446 | INFO     | could have reported an average CPU frequency of 3036 MHz (6 samples)
[2025-07-27 00:35:23] 2025-07-27 04:34:51,447 | INFO     | ..............................
[2025-07-27 00:35:23] 2025-07-27 04:34:51,447 | INFO     | . Timing measurements:
[2025-07-27 00:35:23] 2025-07-27 04:34:51,447 | INFO     | . get job = 0 s
[2025-07-27 00:35:23] 2025-07-27 04:34:51,447 | INFO     | . initial setup = 2 s
[2025-07-27 00:35:23] 2025-07-27 04:34:51,447 | INFO     | . payload setup = 4 s
[2025-07-27 00:35:23] 2025-07-27 04:34:51,447 | INFO     | . stage-in = 0 s
[2025-07-27 00:35:23] 2025-07-27 04:34:51,447 | INFO     | . payload execution = 3919 s
[2025-07-27 00:35:23] 2025-07-27 04:34:51,447 | INFO     | . stage-out = 0 s
[2025-07-27 00:35:23] 2025-07-27 04:34:51,447 | INFO     | . log creation = 0 s
[2025-07-27 00:35:23] 2025-07-27 04:34:51,448 | INFO     | ..............................
[2025-07-27 00:35:23] 2025-07-27 04:34:51,529 | INFO     | 
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | job summary report
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | --------------------------------------------------
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | PanDA job id: 6745938858
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | task id: 45758332
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | errors: (none)
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | pilot state: finished 
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | transexitcode: 0
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | exeerrorcode: 0
[2025-07-27 00:35:23] 2025-07-27 04:34:51,530 | INFO     | exeerrordiag: 
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | exitcode: 0
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | exitmsg: OK
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | cpuconsumptiontime: 29369 s
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | nevents: 400
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | neventsw: 0
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | pid: 2636
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | pgrp: 2636
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | corecount: 8
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | event service: False
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | sizes: {0: 2397461, 3: 2397723, 11: 2397751, 3927: 2423665, 3928: 2432663, 3929: 2432719, 3933: 2433041}
[2025-07-27 00:35:23] 2025-07-27 04:34:51,531 | INFO     | --------------------------------------------------
[2025-07-27 00:35:23] 2025-07-27 04:34:51,532 | INFO     | 
[2025-07-27 00:35:23] 2025-07-27 04:34:51,532 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 00:35:23] 2025-07-27 04:34:51,551 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,551 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,551 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,551 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,553 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 00:35:23] 2025-07-27 04:34:51,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 00:35:23] 2025-07-27 04:34:51,553 | INFO     | job 6745938858 has completed (purged errors)
[2025-07-27 00:35:23] 2025-07-27 04:34:51,553 | INFO     | overall cleanup function is called
[2025-07-27 00:35:23] 2025-07-27 04:34:52,560 | INFO     | --- collectZombieJob: --- 10, [2636]
[2025-07-27 00:35:23] 2025-07-27 04:34:52,560 | INFO     | zombie collector waiting for pid 2636
[2025-07-27 00:35:23] 2025-07-27 04:34:52,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 00:35:23] 2025-07-27 04:34:52,561 | INFO     | collected zombie processes
[2025-07-27 00:35:23] 2025-07-27 04:34:52,561 | INFO     | will attempt to kill all subprocesses of pid=2636
[2025-07-27 00:35:23] 2025-07-27 04:34:52,653 | INFO     | process IDs to be killed: [2636] (in reverse order)
[2025-07-27 00:35:23] 2025-07-27 04:34:52,701 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 00:35:23] 2025-07-27 04:34:52,702 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 00:35:23] 2025-07-27 04:34:52,705 | INFO     | did not find any defunct processes belonging to 2636
[2025-07-27 00:35:23] 2025-07-27 04:34:52,707 | INFO     | did not find any defunct processes belonging to 2636
[2025-07-27 00:35:23] 2025-07-27 04:34:52,707 | INFO     | ready for new job
[2025-07-27 00:35:23] 2025-07-27 04:34:52,708 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 00:35:23] 2025-07-27 04:34:52,709 | INFO     | ***************************************
[2025-07-27 00:35:23] 2025-07-27 04:34:52,710 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 00:35:23] 2025-07-27 04:34:52,710 | INFO     | ***************************************
[2025-07-27 00:35:23] 2025-07-27 04:34:52,710 | INFO     | 
[2025-07-27 00:35:23] 2025-07-27 04:34:52,711 | INFO     | architecture information:
[2025-07-27 00:35:23] 2025-07-27 04:34:52,711 | INFO     | executing command: cat /etc/os-release
[2025-07-27 00:35:23] 2025-07-27 04:34:52,725 | INFO     | cat /etc/os-release:
[2025-07-27 00:35:23] NAME="CentOS Linux"
[2025-07-27 00:35:23] VERSION="7 (Core)"
[2025-07-27 00:35:23] ID="centos"
[2025-07-27 00:35:23] ID_LIKE="rhel fedora"
[2025-07-27 00:35:23] VERSION_ID="7"
[2025-07-27 00:35:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 00:35:23] ANSI_COLOR="0;31"
[2025-07-27 00:35:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 00:35:23] HOME_URL="https://www.centos.org/"
[2025-07-27 00:35:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 00:35:23] 
[2025-07-27 00:35:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 00:35:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 00:35:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 00:35:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 00:35:23] 
[2025-07-27 00:35:23] 2025-07-27 04:34:52,725 | INFO     | ***************************************
[2025-07-27 00:35:23] 2025-07-27 04:34:53,228 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 00:35:23] 2025-07-27 04:34:53,246 | INFO     | sufficient remaining disk space (32730251264 B)
[2025-07-27 00:35:23] 2025-07-27 04:34:53,246 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 00:35:23] 2025-07-27 04:34:53,246 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 00:35:23] 2025-07-27 04:34:53,246 | INFO     | update_server=False
[2025-07-27 00:35:23] 2025-07-27 04:34:53,247 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 00:35:23] 2025-07-27 04:34:53,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 00:35:23] 2025-07-27 04:34:53,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 00:35:23] 2025-07-27 04:34:53,247 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 00:35:23] 2025-07-27 04:34:53,248 | INFO     | aborting loop
[2025-07-27 00:35:23] 2025-07-27 04:34:53,468 | INFO     | all payload control threads have been joined
[2025-07-27 00:35:23] 2025-07-27 04:34:53,619 | INFO     | all job control threads have been joined
[2025-07-27 00:35:23] 2025-07-27 04:34:54,146 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 00:35:23] 2025-07-27 04:34:54,249 | INFO     | [job] queue monitor thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:54,250 | INFO     | [job] retrieve thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:54,253 | INFO     | [job] job monitor thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:54,285 | INFO     | all data control threads have been joined
[2025-07-27 00:35:23] 2025-07-27 04:34:54,467 | INFO     | [payload] validate_post thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:54,474 | INFO     | [payload] control thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:54,625 | INFO     | [job] control thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:54,957 | INFO     | [data] copytool_in thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:54,964 | INFO     | [job] validate thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:55,070 | INFO     | [payload] failed_post thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:55,183 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:55,291 | INFO     | [data] control thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:55,335 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:55,442 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:56,152 | INFO     | [data] copytool_out thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:34:57,254 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:35:04,188 | INFO     | job.realtimelogging is not enabled
[2025-07-27 00:35:23] 2025-07-27 04:35:05,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 00:35:23] 2025-07-27 04:35:06,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139813622085440)>', '<ExcThread(monitor, started 139813030180608)>']
[2025-07-27 00:35:23] 2025-07-27 04:35:11,790 | INFO     | all workflow threads have been joined
[2025-07-27 00:35:23] 2025-07-27 04:35:11,790 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 00:35:23] 2025-07-27 04:35:11,790 | INFO     | traces error code: 0
[2025-07-27 00:35:23] 2025-07-27 04:35:11,791 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 00:35:23] 2025-07-27 04:35:23,751 | INFO     | PID=28564 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 00:35:23] 2025-07-27 04:35:23,752 | INFO     | .. there are 2 such processes running
[2025-07-27 00:35:23] 2025-07-27 04:35:23,752 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 00:35:23] 2025-07-27 04:35:23,752 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 00:35:23] 2025-07-27 04:35:23,752 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 00:35:23] 2025-07-27 04:35:23,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 00:35:23] 2025-07-27 04:35:23,752 | INFO     | [monitor] control thread has ended
[2025-07-27 00:35:23] 2025-07-27 04:35:23,841 [wrapper] ==== pilot stdout END ====
[2025-07-27 00:35:23] 2025-07-27 04:35:23,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 00:35:23] 2025-07-27 04:35:23,847 [wrapper] pilotpid: 28564
[2025-07-27 00:35:23] 2025-07-27 04:35:23,849 [wrapper] Pilot exit status: 0
[2025-07-27 00:35:23] 2025-07-27 04:35:23,858 [wrapper] pandaids: 6745938858
[2025-07-27 00:35:23] 2025-07-27 04:35:23,882 [wrapper] cleanup supervisor_pilot 14613 28565
[2025-07-27 00:35:23] 2025-07-27 04:35:23,885 [wrapper] Test setup, not cleaning
[2025-07-27 00:35:23] 2025-07-27 04:35:23,887 [wrapper] apfmon messages muted
[2025-07-27 00:35:23] 2025-07-27 04:35:23,889 [wrapper] ==== wrapper stdout END ====
[2025-07-27 00:35:23] 2025-07-27 04:35:23,891 [wrapper] ==== wrapper stderr END ====
[2025-07-27 00:35:23]  *** Error codes and diagnostics ***
[2025-07-27 00:35:23]     "exeErrorCode": 0,
[2025-07-27 00:35:23]     "exeErrorDiag": "",
[2025-07-27 00:35:23]     "pilotErrorCode": 0,
[2025-07-27 00:35:23]     "pilotErrorDiag": "",
[2025-07-27 00:35:23]  *** Listing of results directory ***
[2025-07-27 00:35:23] total 412912
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 20:36 pilot3.tar.gz
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 21:02 queuedata.json
[2025-07-27 00:35:23] -rwx------ 1 boincer umatlas     36292 Jul 26 21:02 runpilot2-wrapper.sh
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas       100 Jul 26 23:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 00:35:23] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 23:28 run_atlas
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas       105 Jul 26 23:28 job.xml
[2025-07-27 00:35:23] -rw-r--r-- 2 boincer umatlas 246495782 Jul 26 23:28 EVNT.45758330._000002.pool.root.1
[2025-07-27 00:35:23] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 23:28 start_atlas.sh
[2025-07-27 00:35:23] drwxrwx--x 2 boincer umatlas      4096 Jul 26 23:28 shared
[2025-07-27 00:35:23] -rw-r--r-- 2 boincer umatlas    542882 Jul 26 23:28 input.tar.gz
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas         0 Jul 26 23:28 boinc_lockfile
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas      2555 Jul 26 23:28 pandaJob.out
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas    980125 Jul 26 23:29 agis_schedconf.cvmfs.json
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas   1593052 Jul 26 23:29 agis_ddmendpoints.agis.ALL.json
[2025-07-27 00:35:23] drwx------ 4 boincer umatlas      4096 Jul 26 23:29 pilot3
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas      6050 Jul 27 00:30 init_data.xml
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas 171043033 Jul 27 00:34 HITS.45758332._000016.pool.root.1
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas        95 Jul 27 00:34 pilot_heartbeat.json
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas       529 Jul 27 00:34 boinc_task_state.xml
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas      1047 Jul 27 00:34 memory_monitor_summary.json
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas    303062 Jul 27 00:34 log.45758332._000016.job.log.tgz.1
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas      7826 Jul 27 00:34 heartbeat.json
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 00:35 boinc_mmap_file
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas        27 Jul 27 00:35 wrapper_checkpoint.txt
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas       820 Jul 27 00:35 pilotlog.txt
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas    400234 Jul 27 00:35 log.45758332._000016.job.log.1
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas       357 Jul 27 00:35 output.list
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas       620 Jul 27 00:35 runtime_log
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas    727040 Jul 27 00:35 result.tar.gz
[2025-07-27 00:35:23] -rw------- 1 boincer umatlas       657 Jul 27 00:35 rVjLDmyx4z7n9Rq4apOajLDm4fhM0noT9bVof3QYDm8h1KDmQex8am.diag
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas      8660 Jul 27 00:35 runtime_log.err
[2025-07-27 00:35:23] -rw-r--r-- 1 boincer umatlas     21437 Jul 27 00:35 stderr.txt
[2025-07-27 00:35:24] HITS file was successfully produced:
[2025-07-27 00:35:24] -rw------- 1 boincer umatlas 171043033 Jul 27 00:34 shared/HITS.pool.root.1
[2025-07-27 00:35:24]  *** Contents of shared directory: ***
[2025-07-27 00:35:24] total 409020
[2025-07-27 00:35:24] -rw-r--r-- 2 boincer umatlas 246495782 Jul 26 23:28 ATLAS.root_0
[2025-07-27 00:35:24] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 23:28 start_atlas.sh
[2025-07-27 00:35:24] -rw-r--r-- 2 boincer umatlas    542882 Jul 26 23:28 input.tar.gz
[2025-07-27 00:35:24] -rw------- 1 boincer umatlas 171043033 Jul 27 00:34 HITS.pool.root.1
[2025-07-27 00:35:24] -rw------- 1 boincer umatlas    727040 Jul 27 00:35 result.tar.gz
00:35:25 (24932): run_atlas exited; CPU time 29358.645059
00:35:25 (24932): called boinc_finish(0)

</stderr_txt>
]]>

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