Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:39:51 (17911): wrapper (7.7.26015): starting
23:39:51 (17911): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 23:39:51] Arguments: --nthreads 12
[2025-07-26 23:39:51] Threads: 12
[2025-07-26 23:39:51] Checking for CVMFS
[2025-07-26 23:39:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 23:39:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 23:39:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 23:39:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 23:39:52] 2.11.2.0 3087 111428 97188 148799 1 57 18339290 20275201 1 130560 0 39579521 99.974 9102643 10356 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 23:39:52] CVMFS is ok
[2025-07-26 23:39:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 23:39:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 23:39:52] Further information can be found at the LHC@home message board.
[2025-07-26 23:39:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 23:39:52] Checking for apptainer binary...
[2025-07-26 23:39:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 23:39:52] Running /usr/bin/apptainer --version
[2025-07-26 23:39:52] apptainer version 1.3.2-1.el7
[2025-07-26 23:39:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 23:39:53] c-115-42.aglt2.org
[2025-07-26 23:39:53] apptainer works
[2025-07-26 23:39:53] Set ATHENA_PROC_NUMBER=12
[2025-07-26 23:39:53] Set ATHENA_CORE_NUMBER=12
[2025-07-26 23:39:53] Starting ATLAS job with PandaID=6745835117
[2025-07-26 23:39:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 00:52:46]  *** The last 200 lines of the pilot log: ***
[2025-07-27 00:52:46]  is_tar=False
[2025-07-27 00:52:46]  lfn=log.45743349._045325.job.log.tgz.1
[2025-07-27 00:52:46]  mtime=0
[2025-07-27 00:52:46]  protocol_id=None
[2025-07-27 00:52:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 00:52:46]  replicas=None
[2025-07-27 00:52:46]  scope=mc23_13p6TeV
[2025-07-27 00:52:46]  status=None
[2025-07-27 00:52:46]  status_code=0
[2025-07-27 00:52:46]  storage_token=
[2025-07-27 00:52:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745835117/log.45743349._045325.job.log.tgz.1
[2025-07-27 00:52:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/e7/log.45743349._045325.job.log.tgz.1
[2025-07-27 00:52:46]  workdir=None
[2025-07-27 00:52:46] ]
[2025-07-27 00:52:46] 2025-07-27 04:52:07,977 | INFO     | transferring file log.45743349._045325.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745835117/log.45743349._045325.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 00:52:46] 2025-07-27 04:52:07,977 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745835117/log.45743349._045325.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._045325.job
[2025-07-27 00:52:46] 2025-07-27 04:52:08,001 | INFO     | adding to output.list: log.45743349._045325.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/e7/log.45743349._045325.job.log.tg
[2025-07-27 00:52:46] 2025-07-27 04:52:08,002 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 00:52:46] 2025-07-27 04:52:08,002 | INFO     | summary of transferred files:
[2025-07-27 00:52:46] 2025-07-27 04:52:08,002 | INFO     |  -- lfn=log.45743349._045325.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 00:52:46] 2025-07-27 04:52:08,002 | INFO     | stage-out finished correctly
[2025-07-27 00:52:46] 2025-07-27 04:52:09,131 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 00:52:46] 2025-07-27 04:52:09,203 | INFO     | job 6745835117 has state=finished
[2025-07-27 00:52:46] 2025-07-27 04:52:09,203 | INFO     | preparing for final server update for job 6745835117 in state='finished'
[2025-07-27 00:52:46] 2025-07-27 04:52:09,204 | INFO     | this job has now completed (state=finished)
[2025-07-27 00:52:46] 2025-07-27 04:52:09,204 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 00:52:46] 2025-07-27 04:52:09,204 | INFO     | log transfer has been attempted: DONE
[2025-07-27 00:52:46] 2025-07-27 04:52:09,205 | INFO     | job 6745835117 has finished - writing final server update
[2025-07-27 00:52:46] 2025-07-27 04:52:09,205 | INFO     | total number of processed events: 400 (read)
[2025-07-27 00:52:46] 2025-07-27 04:52:09,206 | INFO     | executing command: lscpu
[2025-07-27 00:52:46] 2025-07-27 04:52:09,232 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 00:52:46] 2025-07-27 04:52:09,763 | INFO     | PID=21617 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 00:52:46] 2025-07-27 04:52:12,919 | WARNING  | process 28089 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 00:52:46] 2025-07-27 04:52:12,919 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745835117/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 00:52:46] 2025-07-27 04:52:13,007 | INFO     | number of running child processes to parent process 28089: 1
[2025-07-27 00:52:46] 2025-07-27 04:52:13,007 | INFO     | maximum number of monitored processes: 6
[2025-07-27 00:52:46] 2025-07-27 04:52:13,899 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 00:52:46] 2025-07-27 04:52:13,903 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2025-07-27 00:52:46] 2025-07-27 04:52:13,905 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745835117/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 00:52:46] 2025-07-27 04:52:13,906 | INFO     | extracted standard info from prmon json
[2025-07-27 00:52:46] 2025-07-27 04:52:13,906 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 00:52:46] 2025-07-27 04:52:13,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 00:52:46] 2025-07-27 04:52:13,906 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 00:52:46] 2025-07-27 04:52:13,906 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 00:52:46] 2025-07-27 04:52:13,908 | INFO     | fitting pss+swap vs Time
[2025-07-27 00:52:46] 2025-07-27 04:52:13,908 | INFO     | sum of square deviations: 81266640.0
[2025-07-27 00:52:46] 2025-07-27 04:52:13,909 | INFO     | sum of deviations: -7716565636.0
[2025-07-27 00:52:46] 2025-07-27 04:52:13,909 | INFO     | mean x: 1753589863.5
[2025-07-27 00:52:46] 2025-07-27 04:52:13,909 | INFO     | mean y: 2827471.75
[2025-07-27 00:52:46] 2025-07-27 04:52:13,909 | INFO     | -- intersect: 166512618947.34235
[2025-07-27 00:52:46] 2025-07-27 04:52:13,909 | INFO     | intersect: 166512618947.34235
[2025-07-27 00:52:46] 2025-07-27 04:52:13,909 | INFO     | chi2: 0.05014816294827225
[2025-07-27 00:52:46] 2025-07-27 04:52:13,910 | INFO     | -- intersect: 166512618947.34235
[2025-07-27 00:52:46] 2025-07-27 04:52:13,910 | INFO     | current memory leak: -94.95 B/s (using 64 data points, chi2=0.05)
[2025-07-27 00:52:46] 2025-07-27 04:52:13,910 | INFO     | could have reported an average CPU frequency of 2172 MHz (6 samples)
[2025-07-27 00:52:46] 2025-07-27 04:52:13,910 | INFO     | ..............................
[2025-07-27 00:52:46] 2025-07-27 04:52:13,910 | INFO     | . Timing measurements:
[2025-07-27 00:52:46] 2025-07-27 04:52:13,910 | INFO     | . get job = 0 s
[2025-07-27 00:52:46] 2025-07-27 04:52:13,911 | INFO     | . initial setup = 2 s
[2025-07-27 00:52:46] 2025-07-27 04:52:13,911 | INFO     | . payload setup = 9 s
[2025-07-27 00:52:46] 2025-07-27 04:52:13,911 | INFO     | . stage-in = 0 s
[2025-07-27 00:52:46] 2025-07-27 04:52:13,911 | INFO     | . payload execution = 4291 s
[2025-07-27 00:52:46] 2025-07-27 04:52:13,911 | INFO     | . stage-out = 0 s
[2025-07-27 00:52:46] 2025-07-27 04:52:13,911 | INFO     | . log creation = 0 s
[2025-07-27 00:52:46] 2025-07-27 04:52:13,911 | INFO     | ..............................
[2025-07-27 00:52:46] 2025-07-27 04:52:13,990 | INFO     | 
[2025-07-27 00:52:46] 2025-07-27 04:52:13,990 | INFO     | job summary report
[2025-07-27 00:52:46] 2025-07-27 04:52:13,990 | INFO     | --------------------------------------------------
[2025-07-27 00:52:46] 2025-07-27 04:52:13,990 | INFO     | PanDA job id: 6745835117
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | task id: 45743349
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | errors: (none)
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | pilot state: finished 
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | transexitcode: 0
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | exeerrorcode: 0
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | exeerrordiag: 
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | exitcode: 0
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | exitmsg: OK
[2025-07-27 00:52:46] 2025-07-27 04:52:13,991 | INFO     | cpuconsumptiontime: 47880 s
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | nevents: 400
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | neventsw: 0
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | pid: 28089
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | pgrp: 28089
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | corecount: 12
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | event service: False
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | sizes: {0: 2397424, 1: 2397424, 5: 2397714, 11: 2397770, 4304: 2423793, 4305: 2432974, 4307: 2432974, 4311: 2433168}
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | --------------------------------------------------
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | 
[2025-07-27 00:52:46] 2025-07-27 04:52:13,992 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 00:52:46] 2025-07-27 04:52:14,017 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,017 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,017 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,018 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,018 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,018 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,018 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,018 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,018 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,019 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,019 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,019 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,020 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 00:52:46] 2025-07-27 04:52:14,020 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,020 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 00:52:46] 2025-07-27 04:52:14,020 | INFO     | job 6745835117 has completed (purged errors)
[2025-07-27 00:52:46] 2025-07-27 04:52:14,021 | INFO     | overall cleanup function is called
[2025-07-27 00:52:46] 2025-07-27 04:52:15,024 | INFO     | --- collectZombieJob: --- 10, [28089]
[2025-07-27 00:52:46] 2025-07-27 04:52:15,024 | INFO     | zombie collector waiting for pid 28089
[2025-07-27 00:52:46] 2025-07-27 04:52:15,024 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 00:52:46] 2025-07-27 04:52:15,024 | INFO     | collected zombie processes
[2025-07-27 00:52:46] 2025-07-27 04:52:15,024 | INFO     | will attempt to kill all subprocesses of pid=28089
[2025-07-27 00:52:46] 2025-07-27 04:52:15,115 | INFO     | process IDs to be killed: [28089] (in reverse order)
[2025-07-27 00:52:46] 2025-07-27 04:52:15,167 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 00:52:46] 2025-07-27 04:52:15,168 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 00:52:46] 2025-07-27 04:52:15,171 | INFO     | did not find any defunct processes belonging to 28089
[2025-07-27 00:52:46] 2025-07-27 04:52:15,175 | INFO     | did not find any defunct processes belonging to 28089
[2025-07-27 00:52:46] 2025-07-27 04:52:15,175 | INFO     | ready for new job
[2025-07-27 00:52:46] 2025-07-27 04:52:15,175 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 00:52:46] 2025-07-27 04:52:15,176 | INFO     | ***************************************
[2025-07-27 00:52:46] 2025-07-27 04:52:15,176 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 00:52:46] 2025-07-27 04:52:15,176 | INFO     | ***************************************
[2025-07-27 00:52:46] 2025-07-27 04:52:15,177 | INFO     | 
[2025-07-27 00:52:46] 2025-07-27 04:52:15,177 | INFO     | architecture information:
[2025-07-27 00:52:46] 2025-07-27 04:52:15,178 | INFO     | executing command: cat /etc/os-release
[2025-07-27 00:52:46] 2025-07-27 04:52:15,196 | INFO     | cat /etc/os-release:
[2025-07-27 00:52:46] NAME="CentOS Linux"
[2025-07-27 00:52:46] VERSION="7 (Core)"
[2025-07-27 00:52:46] ID="centos"
[2025-07-27 00:52:46] ID_LIKE="rhel fedora"
[2025-07-27 00:52:46] VERSION_ID="7"
[2025-07-27 00:52:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 00:52:46] ANSI_COLOR="0;31"
[2025-07-27 00:52:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 00:52:46] HOME_URL="https://www.centos.org/"
[2025-07-27 00:52:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 00:52:46] 
[2025-07-27 00:52:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 00:52:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 00:52:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 00:52:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 00:52:46] 
[2025-07-27 00:52:46] 2025-07-27 04:52:15,197 | INFO     | ***************************************
[2025-07-27 00:52:46] 2025-07-27 04:52:15,700 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 00:52:46] 2025-07-27 04:52:15,720 | INFO     | sufficient remaining disk space (18745393152 B)
[2025-07-27 00:52:46] 2025-07-27 04:52:15,720 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 00:52:46] 2025-07-27 04:52:15,721 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 00:52:46] 2025-07-27 04:52:15,721 | INFO     | update_server=False
[2025-07-27 00:52:46] 2025-07-27 04:52:15,721 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 00:52:46] 2025-07-27 04:52:15,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 00:52:46] 2025-07-27 04:52:15,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 00:52:46] 2025-07-27 04:52:15,980 | INFO     | all data control threads have been joined
[2025-07-27 00:52:46] 2025-07-27 04:52:16,090 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 00:52:46] 2025-07-27 04:52:16,503 | INFO     | all job control threads have been joined
[2025-07-27 00:52:46] 2025-07-27 04:52:16,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 00:52:46] 2025-07-27 04:52:16,515 | INFO     | aborting loop
[2025-07-27 00:52:46] 2025-07-27 04:52:16,726 | INFO     | [job] retrieve thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:16,727 | INFO     | [job] queue monitor thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:16,816 | INFO     | all payload control threads have been joined
[2025-07-27 00:52:46] 2025-07-27 04:52:16,872 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:16,985 | INFO     | [data] control thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:16,992 | INFO     | [data] copytool_in thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:17,055 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:17,298 | INFO     | [payload] failed_post thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:17,508 | INFO     | [job] control thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:17,517 | INFO     | [job] job monitor thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:17,822 | INFO     | [payload] control thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:17,896 | INFO     | [payload] validate_post thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:17,901 | INFO     | [job] validate thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:18,095 | INFO     | [data] copytool_out thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:18,143 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:19,728 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:26,132 | INFO     | job.realtimelogging is not enabled
[2025-07-27 00:52:46] 2025-07-27 04:52:27,138 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 00:52:46] 2025-07-27 04:52:28,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139766474585920)>', '<ExcThread(monitor, started 139765215131392)>']
[2025-07-27 00:52:46] 2025-07-27 04:52:33,505 | INFO     | all workflow threads have been joined
[2025-07-27 00:52:46] 2025-07-27 04:52:33,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 00:52:46] 2025-07-27 04:52:33,505 | INFO     | traces error code: 0
[2025-07-27 00:52:46] 2025-07-27 04:52:33,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 00:52:46] 2025-07-27 04:52:45,955 | INFO     | PID=21617 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 00:52:46] 2025-07-27 04:52:45,956 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 00:52:46] 2025-07-27 04:52:45,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 00:52:46] 2025-07-27 04:52:45,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 00:52:46] 2025-07-27 04:52:45,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 00:52:46] 2025-07-27 04:52:45,956 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 00:52:46] 2025-07-27 04:52:45,956 | INFO     | [monitor] control thread has ended
[2025-07-27 00:52:46] 2025-07-27 04:52:46,046 [wrapper] ==== pilot stdout END ====
[2025-07-27 00:52:46] 2025-07-27 04:52:46,050 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 00:52:46] 2025-07-27 04:52:46,053 [wrapper] pilotpid: 21617
[2025-07-27 00:52:46] 2025-07-27 04:52:46,056 [wrapper] Pilot exit status: 0
[2025-07-27 00:52:46] 2025-07-27 04:52:46,070 [wrapper] pandaids: 6745835117
[2025-07-27 00:52:46] 2025-07-27 04:52:46,109 [wrapper] cleanup supervisor_pilot 26327 21618
[2025-07-27 00:52:46] 2025-07-27 04:52:46,113 [wrapper] Test setup, not cleaning
[2025-07-27 00:52:46] 2025-07-27 04:52:46,117 [wrapper] apfmon messages muted
[2025-07-27 00:52:46] 2025-07-27 04:52:46,121 [wrapper] ==== wrapper stdout END ====
[2025-07-27 00:52:46] 2025-07-27 04:52:46,125 [wrapper] ==== wrapper stderr END ====
[2025-07-27 00:52:46]  *** Error codes and diagnostics ***
[2025-07-27 00:52:46]     "exeErrorCode": 0,
[2025-07-27 00:52:46]     "exeErrorDiag": "",
[2025-07-27 00:52:46]     "pilotErrorCode": 0,
[2025-07-27 00:52:46]     "pilotErrorDiag": "",
[2025-07-27 00:52:46]  *** Listing of results directory ***
[2025-07-27 00:52:46] total 348044
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 18:18 pilot3.tar.gz
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 18:19 queuedata.json
[2025-07-27 00:52:46] -rwx------ 1 boincer umatlas     36292 Jul 26 18:20 runpilot2-wrapper.sh
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas       100 Jul 26 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 00:52:46] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 23:39 run_atlas
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas       105 Jul 26 23:39 job.xml
[2025-07-27 00:52:46] -rw-r--r-- 2 boincer umatlas 146823401 Jul 26 23:39 EVNT.45743347._002530.pool.root.1
[2025-07-27 00:52:46] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 23:39 start_atlas.sh
[2025-07-27 00:52:46] drwxrwx--x 2 boincer umatlas      4096 Jul 26 23:39 shared
[2025-07-27 00:52:46] -rw-r--r-- 2 boincer umatlas    542894 Jul 26 23:39 input.tar.gz
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas         0 Jul 26 23:39 boinc_lockfile
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas      2562 Jul 26 23:39 pandaJob.out
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas    980125 Jul 26 23:40 agis_schedconf.cvmfs.json
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas   1593052 Jul 26 23:40 agis_ddmendpoints.agis.ALL.json
[2025-07-27 00:52:46] drwx------ 4 boincer umatlas      4096 Jul 26 23:40 pilot3
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas      5869 Jul 27 00:47 init_data.xml
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas 204158484 Jul 27 00:51 HITS.45743349._045325.pool.root.1
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas        95 Jul 27 00:52 pilot_heartbeat.json
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas      1063 Jul 27 00:52 memory_monitor_summary.json
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas       529 Jul 27 00:52 boinc_task_state.xml
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas    351807 Jul 27 00:52 log.45743349._045325.job.log.tgz.1
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas      7856 Jul 27 00:52 heartbeat.json
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas        27 Jul 27 00:52 wrapper_checkpoint.txt
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 00:52 boinc_mmap_file
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas       815 Jul 27 00:52 pilotlog.txt
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas    418910 Jul 27 00:52 log.45743349._045325.job.log.1
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas       357 Jul 27 00:52 output.list
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas       620 Jul 27 00:52 runtime_log
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas    788480 Jul 27 00:52 result.tar.gz
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 00:52 runtime_log.err
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas       659 Jul 27 00:52 gQlLDmkQ2z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmsW1KDmCbxnWm.diag
[2025-07-27 00:52:46] -rw-r--r-- 1 boincer umatlas     21614 Jul 27 00:52 stderr.txt
[2025-07-27 00:52:46] HITS file was successfully produced:
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas 204158484 Jul 27 00:51 shared/HITS.pool.root.1
[2025-07-27 00:52:46]  *** Contents of shared directory: ***
[2025-07-27 00:52:46] total 344084
[2025-07-27 00:52:46] -rw-r--r-- 2 boincer umatlas 146823401 Jul 26 23:39 ATLAS.root_0
[2025-07-27 00:52:46] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 23:39 start_atlas.sh
[2025-07-27 00:52:46] -rw-r--r-- 2 boincer umatlas    542894 Jul 26 23:39 input.tar.gz
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas 204158484 Jul 27 00:51 HITS.pool.root.1
[2025-07-27 00:52:46] -rw------- 1 boincer umatlas    788480 Jul 27 00:52 result.tar.gz
00:52:47 (17911): run_atlas exited; CPU time 47862.951968
00:52:47 (17911): called boinc_finish(0)

</stderr_txt>
]]>

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