Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:45:22 (3710092): wrapper (7.7.26015): starting
23:45:22 (3710092): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 23:45:22] Arguments: --nthreads 8
[2025-07-26 23:45:22] Threads: 8
[2025-07-26 23:45:22] Checking for CVMFS
[2025-07-26 23:45:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 23:45:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 23:45:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 23:45:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 23:45:22] 2.12.6.0 99509 26745 192500 148799 2 308 27966625 40960000 23030 16776704 0 315003809 99.707 252942771 31189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 23:45:22] CVMFS is ok
[2025-07-26 23:45:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 23:45:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 23:45:22] Further information can be found at the LHC@home message board.
[2025-07-26 23:45:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 23:45:22] Checking for apptainer binary...
[2025-07-26 23:45:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 23:45:22] Running /usr/bin/apptainer --version
[2025-07-26 23:45:22] apptainer version 1.4.1-1.el9
[2025-07-26 23:45:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 23:45:22] c8-16-2.aglt2.org
[2025-07-26 23:45:22] apptainer works
[2025-07-26 23:45:22] Set ATHENA_PROC_NUMBER=8
[2025-07-26 23:45:22] Set ATHENA_CORE_NUMBER=8
[2025-07-26 23:45:22] Starting ATLAS job with PandaID=6745835351
[2025-07-26 23:45:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 00:43:58]  *** The last 200 lines of the pilot log: ***
[2025-07-27 00:43:58]  protocol_id=None
[2025-07-27 00:43:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 00:43:58]  replicas=None
[2025-07-27 00:43:58]  scope=mc23_13p6TeV
[2025-07-27 00:43:58]  status=None
[2025-07-27 00:43:58]  status_code=0
[2025-07-27 00:43:58]  storage_token=
[2025-07-27 00:43:58]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6745835351/log.45743349._045457.job.log.tgz.1
[2025-07-27 00:43:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/54/log.45743349._045457.job.log.tgz.1
[2025-07-27 00:43:58]  workdir=None
[2025-07-27 00:43:58] ]
[2025-07-27 00:43:58] 2025-07-27 04:43:15,875 | INFO     | transferring file log.45743349._045457.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6745835351/log.45743349._045457.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 00:43:58] 2025-07-27 04:43:15,875 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6745835351/log.45743349._045457.job.log.tgz.1 /tmp/boinchome/slots/3/log.45743349._045457.job
[2025-07-27 00:43:58] 2025-07-27 04:43:15,901 | INFO     | adding to output.list: log.45743349._045457.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/54/log.45743349._045457.job.log.tg
[2025-07-27 00:43:58] 2025-07-27 04:43:15,901 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 00:43:58] 2025-07-27 04:43:15,901 | INFO     | summary of transferred files:
[2025-07-27 00:43:58] 2025-07-27 04:43:15,901 | INFO     |  -- lfn=log.45743349._045457.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 00:43:58] 2025-07-27 04:43:15,902 | INFO     | stage-out finished correctly
[2025-07-27 00:43:58] 2025-07-27 04:43:16,291 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 00:43:58] 2025-07-27 04:43:16,344 | INFO     | job 6745835351 has state=finished
[2025-07-27 00:43:58] 2025-07-27 04:43:16,345 | INFO     | preparing for final server update for job 6745835351 in state='finished'
[2025-07-27 00:43:58] 2025-07-27 04:43:16,345 | INFO     | this job has now completed (state=finished)
[2025-07-27 00:43:58] 2025-07-27 04:43:16,345 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 00:43:58] 2025-07-27 04:43:16,345 | INFO     | log transfer has been attempted: DONE
[2025-07-27 00:43:58] 2025-07-27 04:43:16,345 | INFO     | job 6745835351 has finished - writing final server update
[2025-07-27 00:43:58] 2025-07-27 04:43:16,346 | INFO     | total number of processed events: 400 (read)
[2025-07-27 00:43:58] 2025-07-27 04:43:16,346 | INFO     | executing command: lscpu
[2025-07-27 00:43:58] 2025-07-27 04:43:16,428 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 00:43:58] 2025-07-27 04:43:18,261 | WARNING  | process 3723037 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 00:43:58] 2025-07-27 04:43:18,262 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745835351/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 00:43:58] 2025-07-27 04:43:18,682 | INFO     | number of running child processes to parent process 3723037: 1
[2025-07-27 00:43:58] 2025-07-27 04:43:18,682 | INFO     | maximum number of monitored processes: 6
[2025-07-27 00:43:58] 2025-07-27 04:43:21,186 | INFO     | monitor loop #249: job 0:6745835351 is in state 'finished'
[2025-07-27 00:43:58] 2025-07-27 04:43:21,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 00:43:58] 2025-07-27 04:43:23,690 | INFO     | monitor loop #250: job 0:6745835351 is in state 'finished'
[2025-07-27 00:43:58] 2025-07-27 04:43:23,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 00:43:58] 2025-07-27 04:43:25,079 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 00:43:58] 2025-07-27 04:43:25,084 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3689.0574218750003
[2025-07-27 00:43:58] 2025-07-27 04:43:25,097 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745835351/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 00:43:58] 2025-07-27 04:43:25,097 | INFO     | extracted standard info from prmon json
[2025-07-27 00:43:58] 2025-07-27 04:43:25,097 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 00:43:58] 2025-07-27 04:43:25,097 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 00:43:58] 2025-07-27 04:43:25,098 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 00:43:58] 2025-07-27 04:43:25,098 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | fitting pss+swap vs Time
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | sum of square deviations: 38744912.5
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | sum of deviations: -1297016160.0
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | mean x: 1753589769.5
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | mean y: 2233534.28
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | -- intersect: 58705018552.885345
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | intersect: 58705018552.885345
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | chi2: 0.02057737181704013
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | -- intersect: 58705018552.885345
[2025-07-27 00:43:58] 2025-07-27 04:43:25,099 | INFO     | current memory leak: -33.48 B/s (using 50 data points, chi2=0.02)
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | could have reported an average CPU frequency of 3700 MHz (5 samples)
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | ..............................
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | . Timing measurements:
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | . get job = 0 s
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | . initial setup = 2 s
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | . payload setup = 9 s
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | . stage-in = 0 s
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | . payload execution = 3427 s
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | . stage-out = 0 s
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | . log creation = 0 s
[2025-07-27 00:43:58] 2025-07-27 04:43:25,100 | INFO     | ..............................
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | 
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | job summary report
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | --------------------------------------------------
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | PanDA job id: 6745835351
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | task id: 45743349
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | errors: (none)
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | pilot state: finished 
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | transexitcode: 0
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | exeerrorcode: 0
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | exeerrordiag: 
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | exitcode: 0
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | exitmsg: OK
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | cpuconsumptiontime: 25250 s
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | nevents: 400
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | neventsw: 0
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | pid: 3723037
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | pgrp: 3723037
[2025-07-27 00:43:58] 2025-07-27 04:43:25,159 | INFO     | corecount: 8
[2025-07-27 00:43:58] 2025-07-27 04:43:25,160 | INFO     | event service: False
[2025-07-27 00:43:58] 2025-07-27 04:43:25,160 | INFO     | sizes: {0: 2397361, 1: 2397475, 7: 2397765, 11: 2397793, 3441: 2423380, 3442: 2432562, 3451: 2432732}
[2025-07-27 00:43:58] 2025-07-27 04:43:25,160 | INFO     | --------------------------------------------------
[2025-07-27 00:43:58] 2025-07-27 04:43:25,160 | INFO     | 
[2025-07-27 00:43:58] 2025-07-27 04:43:25,160 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-27 00:43:58] 2025-07-27 04:43:25,203 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | job 6745835351 has completed (purged errors)
[2025-07-27 00:43:58] 2025-07-27 04:43:25,204 | INFO     | overall cleanup function is called
[2025-07-27 00:43:58] 2025-07-27 04:43:26,212 | INFO     | --- collectZombieJob: --- 10, [3723037]
[2025-07-27 00:43:58] 2025-07-27 04:43:26,214 | INFO     | zombie collector waiting for pid 3723037
[2025-07-27 00:43:58] 2025-07-27 04:43:26,214 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 00:43:58] 2025-07-27 04:43:26,214 | INFO     | collected zombie processes
[2025-07-27 00:43:58] 2025-07-27 04:43:26,214 | INFO     | will attempt to kill all subprocesses of pid=3723037
[2025-07-27 00:43:58] 2025-07-27 04:43:26,615 | INFO     | process IDs to be killed: [3723037] (in reverse order)
[2025-07-27 00:43:58] 2025-07-27 04:43:26,778 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 00:43:58] 2025-07-27 04:43:26,779 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 00:43:58] 2025-07-27 04:43:26,803 | INFO     | did not find any defunct processes belonging to 3723037
[2025-07-27 00:43:58] 2025-07-27 04:43:26,826 | INFO     | did not find any defunct processes belonging to 3723037
[2025-07-27 00:43:58] 2025-07-27 04:43:26,826 | INFO     | ready for new job
[2025-07-27 00:43:58] 2025-07-27 04:43:26,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 00:43:58] 2025-07-27 04:43:26,828 | INFO     | ***************************************
[2025-07-27 00:43:58] 2025-07-27 04:43:26,829 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 00:43:58] 2025-07-27 04:43:26,829 | INFO     | ***************************************
[2025-07-27 00:43:58] 2025-07-27 04:43:26,829 | INFO     | 
[2025-07-27 00:43:58] 2025-07-27 04:43:26,850 | INFO     | architecture information:
[2025-07-27 00:43:58] 2025-07-27 04:43:26,850 | INFO     | executing command: cat /etc/os-release
[2025-07-27 00:43:58] 2025-07-27 04:43:26,871 | INFO     | cat /etc/os-release:
[2025-07-27 00:43:58] NAME="CentOS Linux"
[2025-07-27 00:43:58] VERSION="7 (Core)"
[2025-07-27 00:43:58] ID="centos"
[2025-07-27 00:43:58] ID_LIKE="rhel fedora"
[2025-07-27 00:43:58] VERSION_ID="7"
[2025-07-27 00:43:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 00:43:58] ANSI_COLOR="0;31"
[2025-07-27 00:43:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 00:43:58] HOME_URL="https://www.centos.org/"
[2025-07-27 00:43:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 00:43:58] 
[2025-07-27 00:43:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 00:43:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 00:43:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 00:43:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 00:43:58] 
[2025-07-27 00:43:58] 2025-07-27 04:43:26,873 | INFO     | ***************************************
[2025-07-27 00:43:58] 2025-07-27 04:43:27,375 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-27 00:43:58] 2025-07-27 04:43:27,416 | INFO     | sufficient remaining disk space (172364922880 B)
[2025-07-27 00:43:58] 2025-07-27 04:43:27,416 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 00:43:58] 2025-07-27 04:43:27,417 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 00:43:58] 2025-07-27 04:43:27,417 | INFO     | update_server=False
[2025-07-27 00:43:58] 2025-07-27 04:43:27,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 00:43:58] 2025-07-27 04:43:27,417 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 00:43:58] 2025-07-27 04:43:27,417 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 00:43:58] 2025-07-27 04:43:27,419 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 00:43:58] 2025-07-27 04:43:27,419 | INFO     | aborting loop
[2025-07-27 00:43:58] 2025-07-27 04:43:27,548 | INFO     | all data control threads have been joined
[2025-07-27 00:43:58] 2025-07-27 04:43:27,753 | INFO     | all payload control threads have been joined
[2025-07-27 00:43:58] 2025-07-27 04:43:28,028 | INFO     | all job control threads have been joined
[2025-07-27 00:43:58] 2025-07-27 04:43:28,422 | INFO     | [job] retrieve thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:28,424 | INFO     | [job] job monitor thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:28,493 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:28,503 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:28,553 | INFO     | [data] control thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:28,629 | INFO     | [payload] failed_post thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:28,686 | INFO     | [data] copytool_in thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:28,759 | INFO     | [payload] control thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:28,979 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:29,033 | INFO     | [job] control thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:29,424 | INFO     | [data] copytool_out thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:29,630 | INFO     | [job] validate thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:29,943 | INFO     | [payload] validate_post thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:30,172 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 00:43:58] 2025-07-27 04:43:31,178 | INFO     | [job] queue monitor thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:31,424 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:37,734 | INFO     | job.realtimelogging is not enabled
[2025-07-27 00:43:58] 2025-07-27 04:43:38,739 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 00:43:58] 2025-07-27 04:43:40,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762404910912)>', '<ExcThread(monitor, started 139761759008512)>']
[2025-07-27 00:43:58] 2025-07-27 04:43:45,726 | INFO     | all workflow threads have been joined
[2025-07-27 00:43:58] 2025-07-27 04:43:45,726 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 00:43:58] 2025-07-27 04:43:45,726 | INFO     | traces error code: 0
[2025-07-27 00:43:58] 2025-07-27 04:43:45,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 00:43:58] 2025-07-27 04:43:58,357 | INFO     | PID=3714108 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 00:43:58] 2025-07-27 04:43:58,357 | INFO     | .. there are 27 such processes running
[2025-07-27 00:43:58] 2025-07-27 04:43:58,358 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 00:43:58] 2025-07-27 04:43:58,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 00:43:58] 2025-07-27 04:43:58,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 00:43:58] 2025-07-27 04:43:58,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 00:43:58] 2025-07-27 04:43:58,358 | INFO     | [monitor] control thread has ended
[2025-07-27 00:43:58] 2025-07-27 04:43:58,511 [wrapper] ==== pilot stdout END ====
[2025-07-27 00:43:58] 2025-07-27 04:43:58,520 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 00:43:58] 2025-07-27 04:43:58,528 [wrapper] pilotpid: 3714108
[2025-07-27 00:43:58] 2025-07-27 04:43:58,535 [wrapper] Pilot exit status: 0
[2025-07-27 00:43:58] 2025-07-27 04:43:58,559 [wrapper] pandaids: 6745835351
[2025-07-27 00:43:58] 2025-07-27 04:43:58,677 [wrapper] cleanup supervisor_pilot 3988438 3714109
[2025-07-27 00:43:58] 2025-07-27 04:43:58,685 [wrapper] Test setup, not cleaning
[2025-07-27 00:43:58] 2025-07-27 04:43:58,691 [wrapper] apfmon messages muted
[2025-07-27 00:43:58] 2025-07-27 04:43:58,698 [wrapper] ==== wrapper stdout END ====
[2025-07-27 00:43:58] 2025-07-27 04:43:58,703 [wrapper] ==== wrapper stderr END ====
[2025-07-27 00:43:58]  *** Error codes and diagnostics ***
[2025-07-27 00:43:58]     "exeErrorCode": 0,
[2025-07-27 00:43:58]     "exeErrorDiag": "",
[2025-07-27 00:43:58]     "pilotErrorCode": 0,
[2025-07-27 00:43:58]     "pilotErrorDiag": "",
[2025-07-27 00:43:58]  *** Listing of results directory ***
[2025-07-27 00:43:58] total 344072
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 18:18 pilot3.tar.gz
[2025-07-27 00:43:58] -rwx------. 1 boincer umatlas     36292 Jul 26 18:30 runpilot2-wrapper.sh
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 18:30 queuedata.json
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas       100 Jul 26 23:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 00:43:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 23:45 run_atlas
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas       105 Jul 26 23:45 job.xml
[2025-07-27 00:43:58] -rw-r--r--. 2 boincer umatlas 146315887 Jul 26 23:45 EVNT.45743347._002538.pool.root.1
[2025-07-27 00:43:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 23:45 start_atlas.sh
[2025-07-27 00:43:58] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 23:45 shared
[2025-07-27 00:43:58] -rw-r--r--. 2 boincer umatlas    542899 Jul 26 23:45 input.tar.gz
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas         0 Jul 26 23:45 boinc_lockfile
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 23:45 pandaJob.out
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas    980125 Jul 26 23:45 agis_schedconf.cvmfs.json
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas   1593052 Jul 26 23:45 agis_ddmendpoints.agis.ALL.json
[2025-07-27 00:43:58] drwx------. 4 boincer umatlas      4096 Jul 26 23:45 pilot3
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas      7162 Jul 27 00:40 init_data.xml
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas       529 Jul 27 00:42 boinc_task_state.xml
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas 200851174 Jul 27 00:42 HITS.45743349._045457.pool.root.1
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas      1031 Jul 27 00:43 memory_monitor_summary.json
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas    289228 Jul 27 00:43 log.45743349._045457.job.log.tgz.1
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas      7771 Jul 27 00:43 heartbeat.json
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 00:43 boinc_mmap_file
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas        27 Jul 27 00:43 wrapper_checkpoint.txt
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas        95 Jul 27 00:43 pilot_heartbeat.json
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas       823 Jul 27 00:43 pilotlog.txt
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas    355121 Jul 27 00:43 log.45743349._045457.job.log.1
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas       357 Jul 27 00:43 output.list
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas       620 Jul 27 00:43 runtime_log
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas    665600 Jul 27 00:43 result.tar.gz
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 00:43 runtime_log.err
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas       650 Jul 27 00:43 6O2MDmfa2z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmjX1KDmaTwaEm.diag
[2025-07-27 00:43:58] -rw-r--r--. 1 boincer umatlas     21816 Jul 27 00:43 stderr.txt
[2025-07-27 00:43:58] HITS file was successfully produced:
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas 200851174 Jul 27 00:42 shared/HITS.pool.root.1
[2025-07-27 00:43:58]  *** Contents of shared directory: ***
[2025-07-27 00:43:58] total 340236
[2025-07-27 00:43:58] -rw-r--r--. 2 boincer umatlas 146315887 Jul 26 23:45 ATLAS.root_0
[2025-07-27 00:43:58] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 23:45 start_atlas.sh
[2025-07-27 00:43:58] -rw-r--r--. 2 boincer umatlas    542899 Jul 26 23:45 input.tar.gz
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas 200851174 Jul 27 00:42 HITS.pool.root.1
[2025-07-27 00:43:58] -rw-------. 1 boincer umatlas    665600 Jul 27 00:43 result.tar.gz
00:44:00 (3710092): run_atlas exited; CPU time 25344.197531
00:44:00 (3710092): called boinc_finish(0)

</stderr_txt>
]]>

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