Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:39:07 (1467262): wrapper (7.7.26015): starting
00:39:07 (1467262): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 00:39:07] Arguments: --nthreads 12
[2025-07-27 00:39:07] Threads: 12
[2025-07-27 00:39:07] Checking for CVMFS
[2025-07-27 00:39:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 00:39:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 00:39:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 00:39:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 00:39:08] 2.13.0.0 2408171 17896 321080 148800 2 336 19275992 32935936 9761 16776704 0 36948602 99.689 57153173 29730 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 00:39:08] CVMFS is ok
[2025-07-27 00:39:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 00:39:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 00:39:08] Further information can be found at the LHC@home message board.
[2025-07-27 00:39:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 00:39:08] Checking for apptainer binary...
[2025-07-27 00:39:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 00:39:08] Running /usr/bin/apptainer --version
[2025-07-27 00:39:08] apptainer version 1.4.1-1.el9
[2025-07-27 00:39:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 00:39:08] c6-5-7-3.aglt2.org
[2025-07-27 00:39:08] apptainer works
[2025-07-27 00:39:08] Set ATHENA_PROC_NUMBER=12
[2025-07-27 00:39:08] Set ATHENA_CORE_NUMBER=12
[2025-07-27 00:39:08] Starting ATLAS job with PandaID=6745835014
[2025-07-27 00:39:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 01:57:14]  *** The last 200 lines of the pilot log: ***
[2025-07-27 01:57:14]  protocol_id=None
[2025-07-27 01:57:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 01:57:14]  replicas=None
[2025-07-27 01:57:14]  scope=mc23_13p6TeV
[2025-07-27 01:57:14]  status=None
[2025-07-27 01:57:14]  status_code=0
[2025-07-27 01:57:14]  storage_token=
[2025-07-27 01:57:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745835014/log.45743349._045222.job.log.tgz.1
[2025-07-27 01:57:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/f7/log.45743349._045222.job.log.tgz.1
[2025-07-27 01:57:14]  workdir=None
[2025-07-27 01:57:14] ]
[2025-07-27 01:57:14] 2025-07-27 05:56:36,991 | INFO     | transferring file log.45743349._045222.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745835014/log.45743349._045222.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 01:57:14] 2025-07-27 05:56:36,991 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745835014/log.45743349._045222.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._045222.job
[2025-07-27 01:57:14] 2025-07-27 05:56:37,016 | INFO     | adding to output.list: log.45743349._045222.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/f7/log.45743349._045222.job.log.tg
[2025-07-27 01:57:14] 2025-07-27 05:56:37,017 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 01:57:14] 2025-07-27 05:56:37,017 | INFO     | summary of transferred files:
[2025-07-27 01:57:14] 2025-07-27 05:56:37,017 | INFO     |  -- lfn=log.45743349._045222.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 01:57:14] 2025-07-27 05:56:37,017 | INFO     | stage-out finished correctly
[2025-07-27 01:57:14] 2025-07-27 05:56:37,113 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 01:57:14] 2025-07-27 05:56:37,228 | INFO     | monitor loop #345: job 0:6745835014 is in state 'finished'
[2025-07-27 01:57:14] 2025-07-27 05:56:37,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 01:57:14] 2025-07-27 05:56:37,695 | INFO     | job 6745835014 has state=finished
[2025-07-27 01:57:14] 2025-07-27 05:56:37,696 | INFO     | preparing for final server update for job 6745835014 in state='finished'
[2025-07-27 01:57:14] 2025-07-27 05:56:37,696 | INFO     | this job has now completed (state=finished)
[2025-07-27 01:57:14] 2025-07-27 05:56:37,696 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 01:57:14] 2025-07-27 05:56:37,697 | INFO     | log transfer has been attempted: DONE
[2025-07-27 01:57:14] 2025-07-27 05:56:37,697 | INFO     | job 6745835014 has finished - writing final server update
[2025-07-27 01:57:14] 2025-07-27 05:56:37,697 | INFO     | total number of processed events: 400 (read)
[2025-07-27 01:57:14] 2025-07-27 05:56:37,698 | INFO     | executing command: lscpu
[2025-07-27 01:57:14] 2025-07-27 05:56:37,757 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 01:57:14] 2025-07-27 05:56:39,732 | INFO     | monitor loop #346: job 0:6745835014 is in state 'finished'
[2025-07-27 01:57:14] 2025-07-27 05:56:39,733 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 01:57:14] 2025-07-27 05:56:42,235 | INFO     | monitor loop #347: job 0:6745835014 is in state 'finished'
[2025-07-27 01:57:14] 2025-07-27 05:56:42,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 01:57:14] 2025-07-27 05:56:42,287 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 01:57:14] 2025-07-27 05:56:42,295 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2670.3719464285705
[2025-07-27 01:57:14] 2025-07-27 05:56:42,303 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745835014/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 01:57:14] 2025-07-27 05:56:42,304 | INFO     | extracted standard info from prmon json
[2025-07-27 01:57:14] 2025-07-27 05:56:42,304 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 01:57:14] 2025-07-27 05:56:42,304 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 01:57:14] 2025-07-27 05:56:42,305 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 01:57:14] 2025-07-27 05:56:42,305 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 01:57:14] 2025-07-27 05:56:42,307 | INFO     | fitting pss+swap vs Time
[2025-07-27 01:57:14] 2025-07-27 05:56:42,307 | INFO     | sum of square deviations: 101843770.0
[2025-07-27 01:57:14] 2025-07-27 05:56:42,307 | INFO     | sum of deviations: -10963102268.000004
[2025-07-27 01:57:14] 2025-07-27 05:56:42,307 | INFO     | mean x: 1753593571.0
[2025-07-27 01:57:14] 2025-07-27 05:56:42,308 | INFO     | mean y: 2543691.2463768115
[2025-07-27 01:57:14] 2025-07-27 05:56:42,308 | INFO     | -- intersect: 188770355952.9127
[2025-07-27 01:57:14] 2025-07-27 05:56:42,308 | INFO     | intersect: 188770355952.9127
[2025-07-27 01:57:14] 2025-07-27 05:56:42,308 | INFO     | chi2: 0.2058652531260129
[2025-07-27 01:57:14] 2025-07-27 05:56:42,308 | INFO     | -- intersect: 188770355952.9127
[2025-07-27 01:57:14] 2025-07-27 05:56:42,308 | INFO     | current memory leak: -107.65 B/s (using 69 data points, chi2=0.21)
[2025-07-27 01:57:14] 2025-07-27 05:56:42,308 | INFO     | could have reported an average CPU frequency of 2698 MHz (6 samples)
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | ..............................
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | . Timing measurements:
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | . get job = 0 s
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | . initial setup = 3 s
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | . payload setup = 8 s
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | . stage-in = 0 s
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | . payload execution = 4603 s
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | . stage-out = 0 s
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | . log creation = 0 s
[2025-07-27 01:57:14] 2025-07-27 05:56:42,309 | INFO     | ..............................
[2025-07-27 01:57:14] 2025-07-27 05:56:42,391 | INFO     | 
[2025-07-27 01:57:14] 2025-07-27 05:56:42,391 | INFO     | job summary report
[2025-07-27 01:57:14] 2025-07-27 05:56:42,391 | INFO     | --------------------------------------------------
[2025-07-27 01:57:14] 2025-07-27 05:56:42,391 | INFO     | PanDA job id: 6745835014
[2025-07-27 01:57:14] 2025-07-27 05:56:42,391 | INFO     | task id: 45743349
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | errors: (none)
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | pilot state: finished 
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | transexitcode: 0
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | exeerrorcode: 0
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | exeerrordiag: 
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | exitcode: 0
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | exitmsg: OK
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | cpuconsumptiontime: 49248 s
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | nevents: 400
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | neventsw: 0
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | pid: 1478269
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | pgrp: 1478269
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | corecount: 12
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | event service: False
[2025-07-27 01:57:14] 2025-07-27 05:56:42,392 | INFO     | sizes: {0: 2397253, 1: 2397452, 6: 2397714, 11: 2397742, 4615: 2423817, 4616: 2423816, 4618: 2433054, 4624: 2433192}
[2025-07-27 01:57:14] 2025-07-27 05:56:42,393 | INFO     | --------------------------------------------------
[2025-07-27 01:57:14] 2025-07-27 05:56:42,393 | INFO     | 
[2025-07-27 01:57:14] 2025-07-27 05:56:42,393 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 01:57:14] 2025-07-27 05:56:42,412 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,412 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,412 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,412 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | job 6745835014 has completed (purged errors)
[2025-07-27 01:57:14] 2025-07-27 05:56:42,413 | INFO     | overall cleanup function is called
[2025-07-27 01:57:14] 2025-07-27 05:56:43,421 | INFO     | --- collectZombieJob: --- 10, [1478269]
[2025-07-27 01:57:14] 2025-07-27 05:56:43,421 | INFO     | zombie collector waiting for pid 1478269
[2025-07-27 01:57:14] 2025-07-27 05:56:43,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 01:57:14] 2025-07-27 05:56:43,421 | INFO     | collected zombie processes
[2025-07-27 01:57:14] 2025-07-27 05:56:43,421 | INFO     | will attempt to kill all subprocesses of pid=1478269
[2025-07-27 01:57:14] 2025-07-27 05:56:43,641 | INFO     | process IDs to be killed: [1478269] (in reverse order)
[2025-07-27 01:57:14] 2025-07-27 05:56:43,734 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 01:57:14] 2025-07-27 05:56:43,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 01:57:14] 2025-07-27 05:56:43,744 | INFO     | did not find any defunct processes belonging to 1478269
[2025-07-27 01:57:14] 2025-07-27 05:56:43,753 | INFO     | did not find any defunct processes belonging to 1478269
[2025-07-27 01:57:14] 2025-07-27 05:56:43,754 | INFO     | ready for new job
[2025-07-27 01:57:14] 2025-07-27 05:56:43,754 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 01:57:14] 2025-07-27 05:56:43,756 | INFO     | ***************************************
[2025-07-27 01:57:14] 2025-07-27 05:56:43,756 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 01:57:14] 2025-07-27 05:56:43,760 | INFO     | ***************************************
[2025-07-27 01:57:14] 2025-07-27 05:56:43,760 | INFO     | 
[2025-07-27 01:57:14] 2025-07-27 05:56:43,776 | INFO     | architecture information:
[2025-07-27 01:57:14] 2025-07-27 05:56:43,776 | INFO     | executing command: cat /etc/os-release
[2025-07-27 01:57:14] 2025-07-27 05:56:43,791 | INFO     | cat /etc/os-release:
[2025-07-27 01:57:14] NAME="CentOS Linux"
[2025-07-27 01:57:14] VERSION="7 (Core)"
[2025-07-27 01:57:14] ID="centos"
[2025-07-27 01:57:14] ID_LIKE="rhel fedora"
[2025-07-27 01:57:14] VERSION_ID="7"
[2025-07-27 01:57:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 01:57:14] ANSI_COLOR="0;31"
[2025-07-27 01:57:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 01:57:14] HOME_URL="https://www.centos.org/"
[2025-07-27 01:57:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 01:57:14] 
[2025-07-27 01:57:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 01:57:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 01:57:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 01:57:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 01:57:14] 
[2025-07-27 01:57:14] 2025-07-27 05:56:43,792 | INFO     | ***************************************
[2025-07-27 01:57:14] 2025-07-27 05:56:44,295 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 01:57:14] 2025-07-27 05:56:44,313 | INFO     | sufficient remaining disk space (76426510336 B)
[2025-07-27 01:57:14] 2025-07-27 05:56:44,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 01:57:14] 2025-07-27 05:56:44,314 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 01:57:14] 2025-07-27 05:56:44,314 | INFO     | update_server=False
[2025-07-27 01:57:14] 2025-07-27 05:56:44,314 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 01:57:14] 2025-07-27 05:56:44,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:57:14] 2025-07-27 05:56:44,408 | INFO     | all job control threads have been joined
[2025-07-27 01:57:14] 2025-07-27 05:56:44,616 | INFO     | all payload control threads have been joined
[2025-07-27 01:57:14] 2025-07-27 05:56:44,738 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 01:57:14] 2025-07-27 05:56:44,739 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 01:57:14] 2025-07-27 05:56:44,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:57:14] 2025-07-27 05:56:44,739 | INFO     | will abort loop
[2025-07-27 01:57:14] 2025-07-27 05:56:45,005 | INFO     | all data control threads have been joined
[2025-07-27 01:57:14] 2025-07-27 05:56:45,124 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 01:57:14] 2025-07-27 05:56:45,318 | INFO     | [job] retrieve thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:45,319 | INFO     | [job] queue monitor thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:45,341 | INFO     | [payload] validate_post thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:45,413 | INFO     | [job] control thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:45,601 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:45,621 | INFO     | [payload] control thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:45,743 | INFO     | [job] job monitor thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:45,944 | INFO     | [data] copytool_in thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:46,010 | INFO     | [data] control thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:46,200 | INFO     | [job] validate thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:46,407 | INFO     | [payload] failed_post thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:46,579 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:46,600 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:47,129 | INFO     | [data] copytool_out thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:47,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 01:57:14] 2025-07-27 05:56:51,696 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:54,666 | INFO     | job.realtimelogging is not enabled
[2025-07-27 01:57:14] 2025-07-27 05:56:55,671 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 01:57:14] 2025-07-27 05:56:56,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665823561536)>', '<ExcThread(monitor, started 140665186928384)>']
[2025-07-27 01:57:14] 2025-07-27 05:57:01,757 | INFO     | all workflow threads have been joined
[2025-07-27 01:57:14] 2025-07-27 05:57:01,757 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 01:57:14] 2025-07-27 05:57:01,758 | INFO     | traces error code: 0
[2025-07-27 01:57:14] 2025-07-27 05:57:01,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 01:57:14] 2025-07-27 05:57:14,105 | INFO     | PID=1471191 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 01:57:14] 2025-07-27 05:57:14,106 | INFO     | .. there are 10 such processes running
[2025-07-27 01:57:14] 2025-07-27 05:57:14,107 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 01:57:14] 2025-07-27 05:57:14,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 01:57:14] 2025-07-27 05:57:14,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 01:57:14] 2025-07-27 05:57:14,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 01:57:14] 2025-07-27 05:57:14,107 | INFO     | [monitor] control thread has ended
[2025-07-27 01:57:14] 2025-07-27 05:57:14,320 [wrapper] ==== pilot stdout END ====
[2025-07-27 01:57:14] 2025-07-27 05:57:14,325 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 01:57:14] 2025-07-27 05:57:14,330 [wrapper] pilotpid: 1471191
[2025-07-27 01:57:14] 2025-07-27 05:57:14,334 [wrapper] Pilot exit status: 0
[2025-07-27 01:57:14] 2025-07-27 05:57:14,347 [wrapper] pandaids: 6745835014
[2025-07-27 01:57:14] 2025-07-27 05:57:14,411 [wrapper] cleanup supervisor_pilot 1626687 1471192
[2025-07-27 01:57:14] 2025-07-27 05:57:14,414 [wrapper] Test setup, not cleaning
[2025-07-27 01:57:14] 2025-07-27 05:57:14,417 [wrapper] apfmon messages muted
[2025-07-27 01:57:14] 2025-07-27 05:57:14,420 [wrapper] ==== wrapper stdout END ====
[2025-07-27 01:57:14] 2025-07-27 05:57:14,423 [wrapper] ==== wrapper stderr END ====
[2025-07-27 01:57:14]  *** Error codes and diagnostics ***
[2025-07-27 01:57:14]     "exeErrorCode": 0,
[2025-07-27 01:57:14]     "exeErrorDiag": "",
[2025-07-27 01:57:14]     "pilotErrorCode": 0,
[2025-07-27 01:57:14]     "pilotErrorDiag": "",
[2025-07-27 01:57:14]  *** Listing of results directory ***
[2025-07-27 01:57:14] total 354612
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 17:42 pilot3.tar.gz
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 18:03 queuedata.json
[2025-07-27 01:57:14] -rwx------. 1 boincer umatlas     36292 Jul 26 18:06 runpilot2-wrapper.sh
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas       100 Jul 27 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 01:57:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 00:39 run_atlas
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas       105 Jul 27 00:39 job.xml
[2025-07-27 01:57:14] -rw-r--r--. 2 boincer umatlas 146417574 Jul 27 00:39 EVNT.45743347._002523.pool.root.1
[2025-07-27 01:57:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 00:39 start_atlas.sh
[2025-07-27 01:57:14] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 00:39 shared
[2025-07-27 01:57:14] -rw-r--r--. 2 boincer umatlas    542890 Jul 27 00:39 input.tar.gz
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas         0 Jul 27 00:39 boinc_lockfile
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 00:39 pandaJob.out
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas    980125 Jul 27 00:39 agis_schedconf.cvmfs.json
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas   1593052 Jul 27 00:39 agis_ddmendpoints.agis.ALL.json
[2025-07-27 01:57:14] drwx------. 4 boincer umatlas      4096 Jul 27 00:39 pilot3
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 01:54 init_data.xml
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas 211184300 Jul 27 01:55 HITS.45743349._045222.pool.root.1
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas       529 Jul 27 01:56 boinc_task_state.xml
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas      1036 Jul 27 01:56 memory_monitor_summary.json
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas    360799 Jul 27 01:56 log.45743349._045222.job.log.tgz.1
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas      7823 Jul 27 01:56 heartbeat.json
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas        27 Jul 27 01:57 wrapper_checkpoint.txt
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 01:57 boinc_mmap_file
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas        95 Jul 27 01:57 pilot_heartbeat.json
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas       823 Jul 27 01:57 pilotlog.txt
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas    462951 Jul 27 01:57 log.45743349._045222.job.log.1
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas       357 Jul 27 01:57 output.list
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas       620 Jul 27 01:57 runtime_log
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas    839680 Jul 27 01:57 result.tar.gz
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 01:57 runtime_log.err
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas       653 Jul 27 01:57 2SWLDmKD2z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEJTLDmakjYQo.diag
[2025-07-27 01:57:14] -rw-r--r--. 1 boincer umatlas     21815 Jul 27 01:57 stderr.txt
[2025-07-27 01:57:14] HITS file was successfully produced:
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas 211184300 Jul 27 01:55 shared/HITS.pool.root.1
[2025-07-27 01:57:14]  *** Contents of shared directory: ***
[2025-07-27 01:57:14] total 350596
[2025-07-27 01:57:14] -rw-r--r--. 2 boincer umatlas 146417574 Jul 27 00:39 ATLAS.root_0
[2025-07-27 01:57:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 00:39 start_atlas.sh
[2025-07-27 01:57:14] -rw-r--r--. 2 boincer umatlas    542890 Jul 27 00:39 input.tar.gz
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas 211184300 Jul 27 01:55 HITS.pool.root.1
[2025-07-27 01:57:14] -rw-------. 1 boincer umatlas    839680 Jul 27 01:57 result.tar.gz
01:57:16 (1467262): run_atlas exited; CPU time 49302.259930
01:57:16 (1467262): called boinc_finish(0)

</stderr_txt>
]]>

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