Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
21:33:21 (1936396): wrapper (7.7.26015): starting
21:33:21 (1936396): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 21:33:21] Arguments: --nthreads 12
[2025-07-27 21:33:21] Threads: 12
[2025-07-27 21:33:21] Checking for CVMFS
[2025-07-27 21:33:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:33:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:33:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:33:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:33:22] 2.13.1.0 50093 8177 74612 148825 3 188 3471977 4096000 1824 130560 0 16481955 99.996 299356 287 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-27 21:33:22] CVMFS is ok
[2025-07-27 21:33:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:33:22] Checking for apptainer binary...
[2025-07-27 21:33:22] apptainer is not installed, using version from CVMFS
[2025-07-27 21:33:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:33:22] ryzen7
[2025-07-27 21:33:22] apptainer works
[2025-07-27 21:33:22] Set ATHENA_PROC_NUMBER=12
[2025-07-27 21:33:22] Set ATHENA_CORE_NUMBER=12
[2025-07-27 21:33:22] Starting ATLAS job with PandaID=6745355667
[2025-07-27 21:33:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:04:29]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:04:29]  is_tar=False
[2025-07-27 23:04:29]  lfn=log.45743349._043350.job.log.tgz.1
[2025-07-27 23:04:29]  mtime=0
[2025-07-27 23:04:29]  protocol_id=None
[2025-07-27 23:04:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 23:04:29]  replicas=None
[2025-07-27 23:04:29]  scope=mc23_13p6TeV
[2025-07-27 23:04:29]  status=None
[2025-07-27 23:04:29]  status_code=0
[2025-07-27 23:04:29]  storage_token=
[2025-07-27 23:04:29]  surl=/opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745355667/log.45743349._043350.job.log.tgz.1
[2025-07-27 23:04:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/3a/log.45743349._043350.job.log.tgz.1
[2025-07-27 23:04:29]  workdir=None
[2025-07-27 23:04:29] ]
[2025-07-27 23:04:29] 2025-07-27 23:03:54,793 | INFO     | transferring file log.45743349._043350.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745355667/log.45743349._043350.job.log.tgz.1 t
[2025-07-27 23:04:29] 2025-07-27 23:03:54,793 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745355667/log.45743349._043350.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-27 23:04:29] 2025-07-27 23:03:54,800 | INFO     | adding to output.list: log.45743349._043350.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/3a/log.45743349._043350.job.log.tg
[2025-07-27 23:04:29] 2025-07-27 23:03:54,801 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:04:29] 2025-07-27 23:03:54,801 | INFO     | summary of transferred files:
[2025-07-27 23:04:29] 2025-07-27 23:03:54,801 | INFO     |  -- lfn=log.45743349._043350.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:04:29] 2025-07-27 23:03:54,801 | INFO     | stage-out finished correctly
[2025-07-27 23:04:29] 2025-07-27 23:03:55,811 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:04:29] 2025-07-27 23:03:55,844 | INFO     | job 6745355667 has state=finished
[2025-07-27 23:04:29] 2025-07-27 23:03:55,844 | INFO     | preparing for final server update for job 6745355667 in state='finished'
[2025-07-27 23:04:29] 2025-07-27 23:03:55,844 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:04:29] 2025-07-27 23:03:55,844 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:04:29] 2025-07-27 23:03:55,844 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:04:29] 2025-07-27 23:03:55,844 | INFO     | job 6745355667 has finished - writing final server update
[2025-07-27 23:04:29] 2025-07-27 23:03:55,844 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:04:29] 2025-07-27 23:03:55,845 | INFO     | executing command: lscpu
[2025-07-27 23:04:29] 2025-07-27 23:03:55,872 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:04:29] 2025-07-27 23:03:57,487 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 23:04:29] 2025-07-27 23:03:57,488 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3265.6564375000003
[2025-07-27 23:04:29] 2025-07-27 23:03:57,489 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745355667/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:04:29] 2025-07-27 23:03:57,490 | INFO     | extracted standard info from prmon json
[2025-07-27 23:04:29] 2025-07-27 23:03:57,490 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:04:29] 2025-07-27 23:03:57,490 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:04:29] 2025-07-27 23:03:57,490 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:04:29] 2025-07-27 23:03:57,490 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | sum of square deviations: 147126479.5
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | sum of deviations: -490351153.4999997
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | mean x: 1753654923.5
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | mean y: 2709077.012820513
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | -- intersect: 5847385830.657148
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | intersect: 5847385830.657148
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | chi2: 0.07324868329988837
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | -- intersect: 5847385830.657148
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | current memory leak: -3.33 B/s (using 78 data points, chi2=0.07)
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | could have reported an average CPU frequency of 4025 MHz (6 samples)
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | ..............................
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | . Timing measurements:
[2025-07-27 23:04:29] 2025-07-27 23:03:57,491 | INFO     | . get job = 0 s
[2025-07-27 23:04:29] 2025-07-27 23:03:57,492 | INFO     | . initial setup = 3 s
[2025-07-27 23:04:29] 2025-07-27 23:03:57,492 | INFO     | . payload setup = 60 s
[2025-07-27 23:04:29] 2025-07-27 23:03:57,492 | INFO     | . stage-in = 0 s
[2025-07-27 23:04:29] 2025-07-27 23:03:57,492 | INFO     | . payload execution = 5196 s
[2025-07-27 23:04:29] 2025-07-27 23:03:57,492 | INFO     | . stage-out = 0 s
[2025-07-27 23:04:29] 2025-07-27 23:03:57,492 | INFO     | . log creation = 0 s
[2025-07-27 23:04:29] 2025-07-27 23:03:57,492 | INFO     | ..............................
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | 
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | job summary report
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | --------------------------------------------------
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | PanDA job id: 6745355667
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | task id: 45743349
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | errors: (none)
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | pilot state: finished 
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | transexitcode: 0
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | exeerrorcode: 0
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | exeerrordiag: 
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | exitcode: 0
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | exitmsg: OK
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | cpuconsumptiontime: 27626 s
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | nevents: 400
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | neventsw: 0
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | pid: 1946689
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | pgrp: 1946689
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | corecount: 12
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | event service: False
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | sizes: {0: 2397498, 11: 2397498, 22: 2397526, 32: 2397554, 43: 2397582, 45: 2397872, 54: 2398028, 5260: 2424629, 5261: 2433673, 5262: 2433729, 5264: 2433923}
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | --------------------------------------------------
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | 
[2025-07-27 23:04:29] 2025-07-27 23:03:57,917 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-07-27 23:04:29] 2025-07-27 23:03:57,926 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,926 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,926 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,926 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,926 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | job 6745355667 has completed (purged errors)
[2025-07-27 23:04:29] 2025-07-27 23:03:57,927 | INFO     | overall cleanup function is called
[2025-07-27 23:04:29] 2025-07-27 23:03:58,930 | INFO     | --- collectZombieJob: --- 10, [1946689]
[2025-07-27 23:04:29] 2025-07-27 23:03:58,930 | INFO     | zombie collector waiting for pid 1946689
[2025-07-27 23:04:29] 2025-07-27 23:03:58,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:04:29] 2025-07-27 23:03:58,930 | INFO     | collected zombie processes
[2025-07-27 23:04:29] 2025-07-27 23:03:58,930 | INFO     | will attempt to kill all subprocesses of pid=1946689
[2025-07-27 23:04:29] 2025-07-27 23:03:58,981 | INFO     | process IDs to be killed: [1946689] (in reverse order)
[2025-07-27 23:04:29] 2025-07-27 23:03:59,001 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:04:29] 2025-07-27 23:03:59,001 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:04:29] 2025-07-27 23:03:59,003 | INFO     | did not find any defunct processes belonging to 1946689
[2025-07-27 23:04:29] 2025-07-27 23:03:59,005 | INFO     | did not find any defunct processes belonging to 1946689
[2025-07-27 23:04:29] 2025-07-27 23:03:59,005 | INFO     | ready for new job
[2025-07-27 23:04:29] 2025-07-27 23:03:59,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:04:29] 2025-07-27 23:03:59,006 | INFO     | ***************************************
[2025-07-27 23:04:29] 2025-07-27 23:03:59,006 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:04:29] 2025-07-27 23:03:59,006 | INFO     | ***************************************
[2025-07-27 23:04:29] 2025-07-27 23:03:59,006 | INFO     | 
[2025-07-27 23:04:29] 2025-07-27 23:03:59,026 | INFO     | architecture information:
[2025-07-27 23:04:29] 2025-07-27 23:03:59,027 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:04:29] 2025-07-27 23:03:59,031 | INFO     | cat /etc/os-release:
[2025-07-27 23:04:29] NAME="CentOS Linux"
[2025-07-27 23:04:29] VERSION="7 (Core)"
[2025-07-27 23:04:29] ID="centos"
[2025-07-27 23:04:29] ID_LIKE="rhel fedora"
[2025-07-27 23:04:29] VERSION_ID="7"
[2025-07-27 23:04:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:04:29] ANSI_COLOR="0;31"
[2025-07-27 23:04:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:04:29] HOME_URL="https://www.centos.org/"
[2025-07-27 23:04:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:04:29] 
[2025-07-27 23:04:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:04:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:04:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:04:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:04:29] 
[2025-07-27 23:04:29] 2025-07-27 23:03:59,031 | INFO     | ***************************************
[2025-07-27 23:04:29] 2025-07-27 23:03:59,534 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-07-27 23:04:29] 2025-07-27 23:03:59,541 | INFO     | sufficient remaining disk space (150313369600 B)
[2025-07-27 23:04:29] 2025-07-27 23:03:59,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:04:29] 2025-07-27 23:03:59,541 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:04:29] 2025-07-27 23:03:59,541 | INFO     | update_server=False
[2025-07-27 23:04:29] 2025-07-27 23:03:59,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:04:29] 2025-07-27 23:03:59,853 | INFO     | all payload control threads have been joined
[2025-07-27 23:04:29] 2025-07-27 23:03:59,902 | INFO     | job.realtimelogging is not enabled
[2025-07-27 23:04:29] 2025-07-27 23:04:00,053 | INFO     | all data control threads have been joined
[2025-07-27 23:04:29] 2025-07-27 23:04:00,341 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:04:29] 2025-07-27 23:04:00,409 | WARNING  | process 1946689 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 23:04:29] 2025-07-27 23:04:00,445 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:04:29] 2025-07-27 23:04:00,495 | INFO     | number of running child processes to parent process 1946689: 1
[2025-07-27 23:04:29] 2025-07-27 23:04:00,495 | INFO     | maximum number of monitored processes: 6
[2025-07-27 23:04:29] 2025-07-27 23:04:00,495 | INFO     | aborting job monitoring since job object (job id=6745355667) has expired
[2025-07-27 23:04:29] 2025-07-27 23:04:00,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:04:29] 2025-07-27 23:04:00,495 | INFO     | will abort loop
[2025-07-27 23:04:29] 2025-07-27 23:04:00,546 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:00,694 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:00,854 | INFO     | [payload] control thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:00,906 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:00,998 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:01,058 | INFO     | [data] control thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:01,098 | INFO     | [job] validate thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:01,178 | INFO     | all job control threads have been joined
[2025-07-27 23:04:29] 2025-07-27 23:04:01,198 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:01,218 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:01,500 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:01,849 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:04:29] 2025-07-27 23:04:01,894 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:02,042 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:02,182 | INFO     | [job] control thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:02,350 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:02,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:04:29] 2025-07-27 23:04:03,534 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:05,854 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:04:29] 2025-07-27 23:04:07,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139627818993472)>', '<ExcThread(monitor, started 139627163805440)>']
[2025-07-27 23:04:29] 2025-07-27 23:04:12,650 | INFO     | all workflow threads have been joined
[2025-07-27 23:04:29] 2025-07-27 23:04:12,650 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:04:29] 2025-07-27 23:04:12,650 | INFO     | traces error code: 0
[2025-07-27 23:04:29] 2025-07-27 23:04:12,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:04:29] 2025-07-27 23:04:29,467 | INFO     | PID=1940085 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:04:29] 2025-07-27 23:04:29,467 | INFO     | .. there are 3 such processes running
[2025-07-27 23:04:29] 2025-07-27 23:04:29,467 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:04:29] 2025-07-27 23:04:29,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:04:29] 2025-07-27 23:04:29,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:04:29] 2025-07-27 23:04:29,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:04:29] 2025-07-27 23:04:29,467 | INFO     | [monitor] control thread has ended
[2025-07-27 23:04:29] 2025-07-27 23:04:29,515 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:04:29] 2025-07-27 23:04:29,516 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:04:29] 2025-07-27 23:04:29,518 [wrapper] pilotpid: 1940085
[2025-07-27 23:04:29] 2025-07-27 23:04:29,519 [wrapper] Pilot exit status: 0
[2025-07-27 23:04:29] 2025-07-27 23:04:29,525 [wrapper] pandaids: 6745355667
[2025-07-27 23:04:29] 2025-07-27 23:04:29,544 [wrapper] cleanup supervisor_pilot 1968552 1940086
[2025-07-27 23:04:29] 2025-07-27 23:04:29,545 [wrapper] Test setup, not cleaning
[2025-07-27 23:04:29] 2025-07-27 23:04:29,547 [wrapper] apfmon messages muted
[2025-07-27 23:04:29] 2025-07-27 23:04:29,548 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:04:29] 2025-07-27 23:04:29,550 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:04:29]  *** Error codes and diagnostics ***
[2025-07-27 23:04:29]     "exeErrorCode": 0,
[2025-07-27 23:04:29]     "exeErrorDiag": "",
[2025-07-27 23:04:29]     "pilotErrorCode": 0,
[2025-07-27 23:04:29]     "pilotErrorDiag": "",
[2025-07-27 23:04:29]  *** Listing of results directory ***
[2025-07-27 23:04:29] total 350764
[2025-07-27 23:04:29] -rwx------ 1 boinc boinc     36292 Jul 26 19:43 runpilot2-wrapper.sh
[2025-07-27 23:04:29] -rw-r--r-- 1 boinc boinc    530466 Jul 26 19:43 pilot3.tar.gz
[2025-07-27 23:04:29] -rw-r--r-- 1 boinc boinc      5112 Jul 26 19:43 queuedata.json
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc       100 Jul 27 21:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:04:29] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 21:33 run_atlas
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc       105 Jul 27 21:33 job.xml
[2025-07-27 23:04:29] -rw-r--r-- 2 boinc boinc     15095 Jul 27 21:33 start_atlas.sh
[2025-07-27 23:04:29] drwxrwx--x 2 boinc boinc      4096 Jul 27 21:33 shared
[2025-07-27 23:04:29] -rw-r--r-- 2 boinc boinc    542880 Jul 27 21:33 input.tar.gz
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc      9702 Jul 27 21:33 init_data.xml
[2025-07-27 23:04:29] -rw-r--r-- 2 boinc boinc 147399959 Jul 27 21:33 EVNT.45743347._002475.pool.root.1
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc         0 Jul 27 21:33 boinc_lockfile
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc      2563 Jul 27 21:33 pandaJob.out
[2025-07-27 23:04:29] -rw------- 1 boinc boinc    980117 Jul 27 21:34 agis_schedconf.cvmfs.json
[2025-07-27 23:04:29] -rw------- 1 boinc boinc   1593052 Jul 27 21:34 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:04:29] drwx------ 4 boinc boinc      4096 Jul 27 21:34 pilot3
[2025-07-27 23:04:29] -rw------- 1 boinc boinc 206081736 Jul 27 23:03 HITS.45743349._043350.pool.root.1
[2025-07-27 23:04:29] -rw------- 1 boinc boinc        95 Jul 27 23:03 pilot_heartbeat.json
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc       530 Jul 27 23:03 boinc_task_state.xml
[2025-07-27 23:04:29] -rw------- 1 boinc boinc      1015 Jul 27 23:03 memory_monitor_summary.json
[2025-07-27 23:04:29] -rw------- 1 boinc boinc    371990 Jul 27 23:03 log.45743349._043350.job.log.tgz.1
[2025-07-27 23:04:29] -rw------- 1 boinc boinc      7732 Jul 27 23:03 heartbeat.json
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc      8192 Jul 27 23:04 boinc_mmap_file
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc        27 Jul 27 23:04 wrapper_checkpoint.txt
[2025-07-27 23:04:29] -rw------- 1 boinc boinc       822 Jul 27 23:04 pilotlog.txt
[2025-07-27 23:04:29] -rw------- 1 boinc boinc    536286 Jul 27 23:04 log.45743349._043350.job.log.1
[2025-07-27 23:04:29] -rw------- 1 boinc boinc       357 Jul 27 23:04 output.list
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc       620 Jul 27 23:04 runtime_log
[2025-07-27 23:04:29] -rw------- 1 boinc boinc    931840 Jul 27 23:04 result.tar.gz
[2025-07-27 23:04:29] -rw------- 1 boinc boinc       648 Jul 27 23:04 saWLDmwyzz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuxSLDmEZ5hHo.diag
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc      8954 Jul 27 23:04 runtime_log.err
[2025-07-27 23:04:29] -rw-rw-r-- 1 boinc boinc     21439 Jul 27 23:04 stderr.txt
[2025-07-27 23:04:29] HITS file was successfully produced:
[2025-07-27 23:04:29] -rw------- 1 boinc boinc 206081736 Jul 27 23:03 shared/HITS.pool.root.1
[2025-07-27 23:04:29]  *** Contents of shared directory: ***
[2025-07-27 23:04:29] total 346668
[2025-07-27 23:04:29] -rw-r--r-- 2 boinc boinc     15095 Jul 27 21:33 start_atlas.sh
[2025-07-27 23:04:29] -rw-r--r-- 2 boinc boinc    542880 Jul 27 21:33 input.tar.gz
[2025-07-27 23:04:29] -rw-r--r-- 2 boinc boinc 147399959 Jul 27 21:33 ATLAS.root_0
[2025-07-27 23:04:29] -rw------- 1 boinc boinc 206081736 Jul 27 23:03 HITS.pool.root.1
[2025-07-27 23:04:29] -rw------- 1 boinc boinc    931840 Jul 27 23:04 result.tar.gz
23:04:30 (1936396): run_atlas exited; CPU time 27654.381445
23:04:30 (1936396): called boinc_finish(0)

</stderr_txt>
]]>

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