Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:24:20 (904284): wrapper (7.7.26015): starting
00:24:20 (904284): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 00:24:20] Arguments: --nthreads 12
[2025-07-27 00:24:20] Threads: 12
[2025-07-27 00:24:20] Checking for CVMFS
[2025-07-27 00:24:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 00:24:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 00:24:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 00:24:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 00:24:20] 2.13.0.0 1190652 17881 325008 148800 2 157 30441429 32935937 8760 16776704 0 32750829 99.725 57182552 29266 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 00:24:20] CVMFS is ok
[2025-07-27 00:24:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 00:24:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 00:24:20] Further information can be found at the LHC@home message board.
[2025-07-27 00:24:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 00:24:20] Checking for apptainer binary...
[2025-07-27 00:24:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 00:24:20] Running /usr/bin/apptainer --version
[2025-07-27 00:24:20] apptainer version 1.4.1-1.el9
[2025-07-27 00:24:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 00:24:20] c6-1-26-3.aglt2.org
[2025-07-27 00:24:20] apptainer works
[2025-07-27 00:24:20] Set ATHENA_PROC_NUMBER=12
[2025-07-27 00:24:20] Set ATHENA_CORE_NUMBER=12
[2025-07-27 00:24:20] Starting ATLAS job with PandaID=6745776112
[2025-07-27 00:24:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 01:34:02]  *** The last 200 lines of the pilot log: ***
[2025-07-27 01:34:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745776112/log.45743349._045135.job.log.tgz.1
[2025-07-27 01:34:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/00/log.45743349._045135.job.log.tgz.1
[2025-07-27 01:34:02]  workdir=None
[2025-07-27 01:34:02] ]
[2025-07-27 01:34:02] 2025-07-27 05:33:23,649 | INFO     | transferring file log.45743349._045135.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745776112/log.45743349._045135.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 01:34:02] 2025-07-27 05:33:23,649 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745776112/log.45743349._045135.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._045135.job
[2025-07-27 01:34:02] 2025-07-27 05:33:23,668 | INFO     | adding to output.list: log.45743349._045135.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/00/log.45743349._045135.job.log.tg
[2025-07-27 01:34:02] 2025-07-27 05:33:23,670 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 01:34:02] 2025-07-27 05:33:23,670 | INFO     | summary of transferred files:
[2025-07-27 01:34:02] 2025-07-27 05:33:23,670 | INFO     |  -- lfn=log.45743349._045135.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 01:34:02] 2025-07-27 05:33:23,670 | INFO     | stage-out finished correctly
[2025-07-27 01:34:02] 2025-07-27 05:33:23,772 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 01:34:02] 2025-07-27 05:33:24,627 | INFO     | job 6745776112 has state=finished
[2025-07-27 01:34:02] 2025-07-27 05:33:24,627 | INFO     | preparing for final server update for job 6745776112 in state='finished'
[2025-07-27 01:34:02] 2025-07-27 05:33:24,628 | INFO     | this job has now completed (state=finished)
[2025-07-27 01:34:02] 2025-07-27 05:33:24,628 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 01:34:02] 2025-07-27 05:33:24,628 | INFO     | log transfer has been attempted: DONE
[2025-07-27 01:34:02] 2025-07-27 05:33:24,628 | INFO     | job 6745776112 has finished - writing final server update
[2025-07-27 01:34:02] 2025-07-27 05:33:24,628 | INFO     | total number of processed events: 400 (read)
[2025-07-27 01:34:02] 2025-07-27 05:33:24,629 | INFO     | executing command: lscpu
[2025-07-27 01:34:02] 2025-07-27 05:33:24,684 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 01:34:02] 2025-07-27 05:33:26,091 | WARNING  | process 914885 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 01:34:02] 2025-07-27 05:33:26,092 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745776112/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 01:34:02] 2025-07-27 05:33:26,093 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745776112/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 01:34:02] 2025-07-27 05:33:26,094 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4199488 B
[2025-07-27 01:34:02] 2025-07-27 05:33:26,094 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16028 B
[2025-07-27 01:34:02] 2025-07-27 05:33:26,094 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 01:34:02] 2025-07-27 05:33:29,259 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 01:34:02] 2025-07-27 05:33:29,268 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2704.659464285715
[2025-07-27 01:34:02] 2025-07-27 05:33:29,276 | INFO     | sufficient remaining disk space (76427558912 B)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,277 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,278 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6745776112: 4495044 B (within 2537553920 B limit)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,278 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6745776112/HITS.45743349._045135.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,278 | INFO     | total size of present files: 0 B (workdir size: 4495044 B)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,278 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6745776112/HITS.45743349._045135.pool.root.1 since it does not exist
[2025-07-27 01:34:02] 2025-07-27 05:33:29,281 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745776112/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,282 | INFO     | extracted standard info from prmon json
[2025-07-27 01:34:02] 2025-07-27 05:33:29,283 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 01:34:02] 2025-07-27 05:33:29,283 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 01:34:02] 2025-07-27 05:33:29,283 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 01:34:02] 2025-07-27 05:33:29,283 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 01:34:02] 2025-07-27 05:33:29,285 | INFO     | fitting pss+swap vs Time
[2025-07-27 01:34:02] 2025-07-27 05:33:29,285 | INFO     | sum of square deviations: 70364110.0
[2025-07-27 01:34:02] 2025-07-27 05:33:29,286 | INFO     | sum of deviations: -8182462774.0
[2025-07-27 01:34:02] 2025-07-27 05:33:29,286 | INFO     | mean x: 1753592433.0
[2025-07-27 01:34:02] 2025-07-27 05:33:29,286 | INFO     | mean y: 2698111.5409836066
[2025-07-27 01:34:02] 2025-07-27 05:33:29,286 | INFO     | -- intersect: 203923486760.6206
[2025-07-27 01:34:02] 2025-07-27 05:33:29,286 | INFO     | intersect: 203923486760.6206
[2025-07-27 01:34:02] 2025-07-27 05:33:29,286 | INFO     | chi2: 0.14723897120806742
[2025-07-27 01:34:02] 2025-07-27 05:33:29,286 | INFO     | -- intersect: 203923486760.6206
[2025-07-27 01:34:02] 2025-07-27 05:33:29,286 | INFO     | current memory leak: -116.29 B/s (using 61 data points, chi2=0.15)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,287 | INFO     | could have reported an average CPU frequency of 2706 MHz (6 samples)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,287 | INFO     | ..............................
[2025-07-27 01:34:02] 2025-07-27 05:33:29,287 | INFO     | . Timing measurements:
[2025-07-27 01:34:02] 2025-07-27 05:33:29,287 | INFO     | . get job = 0 s
[2025-07-27 01:34:02] 2025-07-27 05:33:29,287 | INFO     | . initial setup = 2 s
[2025-07-27 01:34:02] 2025-07-27 05:33:29,287 | INFO     | . payload setup = 6 s
[2025-07-27 01:34:02] 2025-07-27 05:33:29,287 | INFO     | . stage-in = 0 s
[2025-07-27 01:34:02] 2025-07-27 05:33:29,289 | INFO     | . payload execution = 4106 s
[2025-07-27 01:34:02] 2025-07-27 05:33:29,289 | INFO     | . stage-out = 0 s
[2025-07-27 01:34:02] 2025-07-27 05:33:29,289 | INFO     | . log creation = 0 s
[2025-07-27 01:34:02] 2025-07-27 05:33:29,289 | INFO     | ..............................
[2025-07-27 01:34:02] 2025-07-27 05:33:29,375 | INFO     | 
[2025-07-27 01:34:02] 2025-07-27 05:33:29,375 | INFO     | job summary report
[2025-07-27 01:34:02] 2025-07-27 05:33:29,375 | INFO     | --------------------------------------------------
[2025-07-27 01:34:02] 2025-07-27 05:33:29,376 | INFO     | PanDA job id: 6745776112
[2025-07-27 01:34:02] 2025-07-27 05:33:29,376 | INFO     | task id: 45743349
[2025-07-27 01:34:02] 2025-07-27 05:33:29,376 | INFO     | errors: (none)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,376 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 01:34:02] 2025-07-27 05:33:29,376 | INFO     | pilot state: finished 
[2025-07-27 01:34:02] 2025-07-27 05:33:29,376 | INFO     | transexitcode: 0
[2025-07-27 01:34:02] 2025-07-27 05:33:29,376 | INFO     | exeerrorcode: 0
[2025-07-27 01:34:02] 2025-07-27 05:33:29,376 | INFO     | exeerrordiag: 
[2025-07-27 01:34:02] 2025-07-27 05:33:29,377 | INFO     | exitcode: 0
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | exitmsg: OK
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | cpuconsumptiontime: 44832 s
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | nevents: 400
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | neventsw: 0
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | pid: 914885
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | pgrp: 914885
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | corecount: 12
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | event service: False
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | sizes: {0: 2397475, 4: 2397737, 11: 2397765, 4116: 2423719, 4117: 2432773, 4122: 2432939}
[2025-07-27 01:34:02] 2025-07-27 05:33:29,378 | INFO     | --------------------------------------------------
[2025-07-27 01:34:02] 2025-07-27 05:33:29,379 | INFO     | 
[2025-07-27 01:34:02] 2025-07-27 05:33:29,379 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 01:34:02] 2025-07-27 05:33:29,400 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,402 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,402 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,402 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,402 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,402 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,403 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,403 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,403 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,403 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 01:34:02] 2025-07-27 05:33:29,403 | INFO     | job 6745776112 has completed (purged errors)
[2025-07-27 01:34:02] 2025-07-27 05:33:29,403 | INFO     | overall cleanup function is called
[2025-07-27 01:34:02] 2025-07-27 05:33:29,654 | INFO     | number of running child processes to parent process 914885: 1
[2025-07-27 01:34:02] 2025-07-27 05:33:29,655 | INFO     | maximum number of monitored processes: 6
[2025-07-27 01:34:02] 2025-07-27 05:33:29,655 | INFO     | aborting job monitoring since job object (job id=6745776112) has expired
[2025-07-27 01:34:02] 2025-07-27 05:33:30,413 | INFO     | --- collectZombieJob: --- 10, [914885]
[2025-07-27 01:34:02] 2025-07-27 05:33:30,413 | INFO     | zombie collector waiting for pid 914885
[2025-07-27 01:34:02] 2025-07-27 05:33:30,413 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 01:34:02] 2025-07-27 05:33:30,413 | INFO     | collected zombie processes
[2025-07-27 01:34:02] 2025-07-27 05:33:30,413 | INFO     | will attempt to kill all subprocesses of pid=914885
[2025-07-27 01:34:02] 2025-07-27 05:33:30,632 | INFO     | process IDs to be killed: [914885] (in reverse order)
[2025-07-27 01:34:02] 2025-07-27 05:33:30,713 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 01:34:02] 2025-07-27 05:33:30,713 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 01:34:02] 2025-07-27 05:33:30,723 | INFO     | did not find any defunct processes belonging to 914885
[2025-07-27 01:34:02] 2025-07-27 05:33:30,732 | INFO     | did not find any defunct processes belonging to 914885
[2025-07-27 01:34:02] 2025-07-27 05:33:30,733 | INFO     | ready for new job
[2025-07-27 01:34:02] 2025-07-27 05:33:30,733 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 01:34:02] 2025-07-27 05:33:30,735 | INFO     | ***************************************
[2025-07-27 01:34:02] 2025-07-27 05:33:30,735 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 01:34:02] 2025-07-27 05:33:30,735 | INFO     | ***************************************
[2025-07-27 01:34:02] 2025-07-27 05:33:30,735 | INFO     | 
[2025-07-27 01:34:02] 2025-07-27 05:33:30,751 | INFO     | architecture information:
[2025-07-27 01:34:02] 2025-07-27 05:33:30,751 | INFO     | executing command: cat /etc/os-release
[2025-07-27 01:34:02] 2025-07-27 05:33:30,768 | INFO     | cat /etc/os-release:
[2025-07-27 01:34:02] NAME="CentOS Linux"
[2025-07-27 01:34:02] VERSION="7 (Core)"
[2025-07-27 01:34:02] ID="centos"
[2025-07-27 01:34:02] ID_LIKE="rhel fedora"
[2025-07-27 01:34:02] VERSION_ID="7"
[2025-07-27 01:34:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 01:34:02] ANSI_COLOR="0;31"
[2025-07-27 01:34:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 01:34:02] HOME_URL="https://www.centos.org/"
[2025-07-27 01:34:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 01:34:02] 
[2025-07-27 01:34:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 01:34:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 01:34:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 01:34:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 01:34:02] 
[2025-07-27 01:34:02] 2025-07-27 05:33:30,768 | INFO     | ***************************************
[2025-07-27 01:34:02] 2025-07-27 05:33:31,271 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 01:34:02] 2025-07-27 05:33:31,288 | INFO     | sufficient remaining disk space (76432801792 B)
[2025-07-27 01:34:02] 2025-07-27 05:33:31,289 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 01:34:02] 2025-07-27 05:33:31,289 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 01:34:02] 2025-07-27 05:33:31,289 | INFO     | update_server=False
[2025-07-27 01:34:02] 2025-07-27 05:33:31,289 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 01:34:02] 2025-07-27 05:33:31,289 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:34:02] 2025-07-27 05:33:31,290 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:34:02] 2025-07-27 05:33:31,290 | INFO     | aborting loop
[2025-07-27 01:34:02] 2025-07-27 05:33:31,577 | INFO     | all job control threads have been joined
[2025-07-27 01:34:02] 2025-07-27 05:33:31,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 01:34:02] 2025-07-27 05:33:32,274 | INFO     | all payload control threads have been joined
[2025-07-27 01:34:02] 2025-07-27 05:33:32,294 | INFO     | [job] retrieve thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:32,295 | INFO     | [job] job monitor thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:32,295 | INFO     | [job] queue monitor thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:32,381 | INFO     | all data control threads have been joined
[2025-07-27 01:34:02] 2025-07-27 05:33:32,512 | INFO     | [payload] failed_post thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:32,582 | INFO     | [job] control thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:32,606 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:32,959 | INFO     | [job] validate thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:32,982 | INFO     | [data] copytool_in thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:33,146 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:33,165 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:33,258 | INFO     | [payload] validate_post thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:33,279 | INFO     | [payload] control thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:33,386 | INFO     | [data] control thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:33,767 | INFO     | [data] copytool_out thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:34,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 01:34:02] 2025-07-27 05:33:38,364 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:41,505 | INFO     | job.realtimelogging is not enabled
[2025-07-27 01:34:02] 2025-07-27 05:33:42,510 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 01:34:02] 2025-07-27 05:33:44,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708494759744)>', '<ExcThread(monitor, started 139707988023040)>']
[2025-07-27 01:34:02] 2025-07-27 05:33:49,517 | INFO     | all workflow threads have been joined
[2025-07-27 01:34:02] 2025-07-27 05:33:49,517 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 01:34:02] 2025-07-27 05:33:49,517 | INFO     | traces error code: 0
[2025-07-27 01:34:02] 2025-07-27 05:33:49,518 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 01:34:02] 2025-07-27 05:34:02,594 | INFO     | PID=907907 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 01:34:02] 2025-07-27 05:34:02,595 | INFO     | .. there are 11 such processes running
[2025-07-27 01:34:02] 2025-07-27 05:34:02,597 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 01:34:02] 2025-07-27 05:34:02,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 01:34:02] 2025-07-27 05:34:02,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 01:34:02] 2025-07-27 05:34:02,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 01:34:02] 2025-07-27 05:34:02,597 | INFO     | [monitor] control thread has ended
[2025-07-27 01:34:02] 2025-07-27 05:34:02,820 [wrapper] ==== pilot stdout END ====
[2025-07-27 01:34:02] 2025-07-27 05:34:02,823 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 01:34:02] 2025-07-27 05:34:02,826 [wrapper] pilotpid: 907907
[2025-07-27 01:34:02] 2025-07-27 05:34:02,830 [wrapper] Pilot exit status: 0
[2025-07-27 01:34:02] 2025-07-27 05:34:02,843 [wrapper] pandaids: 6745776112
[2025-07-27 01:34:02] 2025-07-27 05:34:02,897 [wrapper] cleanup supervisor_pilot 1039244 907908
[2025-07-27 01:34:02] 2025-07-27 05:34:02,900 [wrapper] Test setup, not cleaning
[2025-07-27 01:34:02] 2025-07-27 05:34:02,903 [wrapper] apfmon messages muted
[2025-07-27 01:34:02] 2025-07-27 05:34:02,907 [wrapper] ==== wrapper stdout END ====
[2025-07-27 01:34:02] 2025-07-27 05:34:02,910 [wrapper] ==== wrapper stderr END ====
[2025-07-27 01:34:02]  *** Error codes and diagnostics ***
[2025-07-27 01:34:02]     "exeErrorCode": 0,
[2025-07-27 01:34:02]     "exeErrorDiag": "",
[2025-07-27 01:34:02]     "pilotErrorCode": 0,
[2025-07-27 01:34:02]     "pilotErrorDiag": "",
[2025-07-27 01:34:02]  *** Listing of results directory ***
[2025-07-27 01:34:02] total 348508
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 17:42 pilot3.tar.gz
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 17:51 queuedata.json
[2025-07-27 01:34:02] -rwx------. 1 boincer umatlas     36292 Jul 26 17:53 runpilot2-wrapper.sh
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas       100 Jul 27 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 01:34:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 00:24 run_atlas
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas       105 Jul 27 00:24 job.xml
[2025-07-27 01:34:02] -rw-r--r--. 2 boincer umatlas 145345609 Jul 27 00:24 EVNT.45743347._002580.pool.root.1
[2025-07-27 01:34:02] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 00:24 start_atlas.sh
[2025-07-27 01:34:02] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 00:24 shared
[2025-07-27 01:34:02] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 00:24 input.tar.gz
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas         0 Jul 27 00:24 boinc_lockfile
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 00:24 pandaJob.out
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas    980125 Jul 27 00:24 agis_schedconf.cvmfs.json
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas   1593052 Jul 27 00:24 agis_ddmendpoints.agis.ALL.json
[2025-07-27 01:34:02] drwx------. 4 boincer umatlas      4096 Jul 27 00:24 pilot3
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 01:27 init_data.xml
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas 206092209 Jul 27 01:32 HITS.45743349._045135.pool.root.1
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas       529 Jul 27 01:33 boinc_task_state.xml
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas      1032 Jul 27 01:33 memory_monitor_summary.json
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas    360708 Jul 27 01:33 log.45743349._045135.job.log.tgz.1
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas      7820 Jul 27 01:33 heartbeat.json
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 01:33 boinc_mmap_file
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas        27 Jul 27 01:33 wrapper_checkpoint.txt
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas        95 Jul 27 01:34 pilot_heartbeat.json
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas       822 Jul 27 01:34 pilotlog.txt
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas    418189 Jul 27 01:34 log.45743349._045135.job.log.1
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas       357 Jul 27 01:34 output.list
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas       620 Jul 27 01:34 runtime_log
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas    798720 Jul 27 01:34 result.tar.gz
[2025-07-27 01:34:02] -rw-------. 1 boincer umatlas       653 Jul 27 01:34 tSiKDmS01z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxGTLDmvCROIm.diag
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 01:34 runtime_log.err
[2025-07-27 01:34:02] -rw-r--r--. 1 boincer umatlas     22533 Jul 27 01:34 stderr.txt
[2025-07-27 01:34:03] HITS file was successfully produced:
[2025-07-27 01:34:03] -rw-------. 1 boincer umatlas 206092209 Jul 27 01:32 shared/HITS.pool.root.1
[2025-07-27 01:34:03]  *** Contents of shared directory: ***
[2025-07-27 01:34:03] total 344536
[2025-07-27 01:34:03] -rw-r--r--. 2 boincer umatlas 145345609 Jul 27 00:24 ATLAS.root_0
[2025-07-27 01:34:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 00:24 start_atlas.sh
[2025-07-27 01:34:03] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 00:24 input.tar.gz
[2025-07-27 01:34:03] -rw-------. 1 boincer umatlas 206092209 Jul 27 01:32 HITS.pool.root.1
[2025-07-27 01:34:03] -rw-------. 1 boincer umatlas    798720 Jul 27 01:34 result.tar.gz
01:34:04 (904284): run_atlas exited; CPU time 44894.455090
01:34:04 (904284): called boinc_finish(0)

</stderr_txt>
]]>

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