Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-28 13:37:24 (8888): Detected: vboxwrapper 26206
2025-07-28 13:37:24 (8888): Detected: BOINC client v7.16.20
2025-07-28 13:37:25 (8888): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-07-28 13:37:25 (8888): Successfully copied 'init_data.xml' to the shared directory.
2025-07-28 13:37:26 (8888): Create VM. (boinc_c812ad03240dcd39, slot#0)
2025-07-28 13:37:26 (8888): Setting Memory Size for VM. (4800MB)
2025-07-28 13:37:26 (8888): Setting CPU Count for VM. (8)
2025-07-28 13:37:27 (8888): Setting Chipset Options for VM.
2025-07-28 13:37:27 (8888): Setting Graphics Controller Options for VM.
2025-07-28 13:37:27 (8888): Setting Boot Options for VM.
2025-07-28 13:37:27 (8888): Setting Network Configuration for NAT.
2025-07-28 13:37:28 (8888): Enabling VM Network Access.
2025-07-28 13:37:28 (8888): Disabling USB Support for VM.
2025-07-28 13:37:28 (8888): Disabling COM Port Support for VM.
2025-07-28 13:37:28 (8888): Disabling LPT Port Support for VM.
2025-07-28 13:37:29 (8888): Disabling Audio Support for VM.
2025-07-28 13:37:29 (8888): Disabling Clipboard Support for VM.
2025-07-28 13:37:29 (8888): Disabling Drag and Drop Support for VM.
2025-07-28 13:37:29 (8888): Adding storage controller(s) to VM.
2025-07-28 13:37:30 (8888): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-28 13:37:31 (8888): Adding VirtualBox Guest Additions to VM.
2025-07-28 13:37:31 (8888): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-28 13:37:31 (8888): forwarding host port 54028 to guest port 80
2025-07-28 13:37:31 (8888): Enabling remote desktop for VM.
2025-07-28 13:37:32 (8888): Required extension pack not installed, remote desktop not enabled.
2025-07-28 13:37:32 (8888): Enabling shared directory for VM.
2025-07-28 13:37:32 (8888): Starting VM using VBoxManage interface. (boinc_c812ad03240dcd39, slot#0)
2025-07-28 13:37:37 (8888): Successfully started VM. (PID = '1436')
2025-07-28 13:37:37 (8888): Reporting VM Process ID to BOINC.
2025-07-28 13:37:37 (8888): Guest Log: BIOS: VirtualBox 6.0.14
2025-07-28 13:37:37 (8888): Guest Log: CPUID EDX: 0x178bfbff
2025-07-28 13:37:37 (8888): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-28 13:37:37 (8888): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-28 13:37:37 (8888): Detected: Web Application Enabled (http://localhost:54028)
2025-07-28 13:37:37 (8888): Preference change detected
2025-07-28 13:37:37 (8888): Setting CPU throttle for VM. (100%)
2025-07-28 13:37:38 (8888): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-28 13:37:39 (8888): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-28 13:37:39 (8888): Guest Log: BIOS: Booting from Hard Disk...
2025-07-28 13:37:42 (8888): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-28 13:37:42 (8888): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-28 13:37:42 (8888): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-28 13:38:00 (8888): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-28 13:38:00 (8888): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-28 13:38:22 (8888): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-28 13:38:22 (8888): Guest Log: 00:00:00.000302 main     Log opened 2025-07-28T13:38:20.512396000Z
2025-07-28 13:38:22 (8888): Guest Log: 00:00:00.000475 main     OS Product: Linux
2025-07-28 13:38:22 (8888): Guest Log: 00:00:00.000549 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-28 13:38:22 (8888): Guest Log: 00:00:00.000604 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-28 13:38:22 (8888): Guest Log: 00:00:00.000658 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-28 13:38:22 (8888): Guest Log: 00:00:00.000660 main     Process ID: 1373
2025-07-28 13:38:22 (8888): Guest Log: 00:00:00.000661 main     Package type: LINUX_64BITS_GENERIC
2025-07-28 13:38:22 (8888): Guest Log: 00:00:00.002889 main     5.2.32 r132073 started. Verbose level = 0
2025-07-28 13:38:22 (8888): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-28 13:38:23 (8888): Guest Log: [INFO] Mounting shared directory
2025-07-28 13:38:23 (8888): Guest Log: [INFO] Checking for init_data.xml
2025-07-28 13:38:32 (8888): Guest Log: 00:00:10.008580 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 788 113 945 000ns (GuestNow=1 753 681 112 406 333 000 ns GuestLast=1 753 709 900 520 278 000 ns fSetTimeLastLoop=true )
2025-07-28 13:38:47 (8888): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-28 13:38:47 (8888): Guest Log: [INFO] Detected branch: prod
2025-07-28 13:38:47 (8888): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-28 13:38:47 (8888): Guest Log: Copying input files
2025-07-28 13:38:49 (8888): Guest Log: Copied input files into RunAtlas.
2025-07-28 13:38:49 (8888): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-28 13:38:49 (8888): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-28 13:38:49 (8888): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-28 13:38:49 (8888): Guest Log: Further information can be found at the LHC@home message board.
2025-07-28 13:39:25 (8888): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-28 13:39:26 (8888): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-28 13:39:26 (8888): Guest Log: 2.6.3.0 1656 0 30192 148837 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-28 13:39:31 (8888): Guest Log: copied the webapp to /var/www
2025-07-28 13:39:31 (8888): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-28 13:39:31 (8888): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-28 13:39:32 (8888): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-28 13:39:32 (8888): Guest Log:  *** Starting ATLAS job. (PandaID=6745919276 taskID=45759065) ***
2025-07-28 13:55:23 (8888): Guest Log:  *** Job finished ***
2025-07-28 13:55:23 (8888): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:02,258 | INFO     | all workflow threads have been joined
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:02,258 | INFO     | end of generic workflow (traces error code: 0)
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:02,259 | INFO     | traces error code: 0
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:02,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,637 | INFO     | PID=6036 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,640 | INFO     | found 0 job(s) in 20 queues
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,640 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,640 | INFO     | [monitor] control thread has ended
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,809 [wrapper] ==== pilot stdout END ====
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,823 [wrapper] ==== wrapper stdout RESUME ====
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,836 [wrapper] pilotpid: 6036
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,851 [wrapper] Pilot exit status: 0
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:21,993 [wrapper] pandaids: 6745919276
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:22,120 [wrapper] cleanup supervisor_pilot  6042 6037
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:22,137 [wrapper] Test setup, not cleaning
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:22,158 [wrapper] apfmon messages muted
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:22,176 [wrapper] ==== wrapper stdout END ====
2025-07-28 13:55:23 (8888): Guest Log: 2025-07-28 05:55:22,195 [wrapper] ==== wrapper stderr END ====
2025-07-28 13:55:23 (8888): Guest Log:  *** Error codes and diagnostics ***
2025-07-28 13:55:23 (8888): Guest Log:     "exeErrorCode": 65,
2025-07-28 13:55:23 (8888): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"DetectorStore_Impl                                               FATAL in sysInitialize(): standard std::exception is caught\"",
2025-07-28 13:55:23 (8888): Guest Log:     "pilotErrorCode": 1305,
2025-07-28 13:55:23 (8888): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"DetectorStore_Impl                                               FATAL in sysInitia",
2025-07-28 13:55:23 (8888): Guest Log:  *** Listing of results directory ***
2025-07-28 13:55:23 (8888): Guest Log: total 4052
2025-07-28 13:55:23 (8888): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 27 00:29 pilot3.tar.gz
2025-07-28 13:55:23 (8888): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 27 00:33 queuedata.json
2025-07-28 13:55:23 (8888): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 27 00:33 runpilot2-wrapper.sh
2025-07-28 13:55:23 (8888): Guest Log: -rwxr-xr-x. 1 atlas atlas    5993 Jul 28 05:38 init_data.xml
2025-07-28 13:55:23 (8888): Guest Log: -rwxr-xr-x. 1 atlas atlas  542875 Jul 28 05:38 input.tar.gz
2025-07-28 13:55:23 (8888): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 28 05:38 start_atlas.sh
2025-07-28 13:55:23 (8888): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 28 05:38 EVNT.45759062._000001.pool.root.1 -> /data/./ATLAS.root_0
2025-07-28 13:55:23 (8888): Guest Log: -rw-r--r--. 1 atlas atlas    2553 Jul 28 05:39 pandaJob.out
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas  980125 Jul 28 05:42 agis_schedconf.cvmfs.json
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas 1593052 Jul 28 05:42 agis_ddmendpoints.agis.ALL.json
2025-07-28 13:55:23 (8888): Guest Log: drwx------. 4 atlas atlas    4096 Jul 28 05:42 pilot3
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas    1020 Jul 28 05:52 memory_monitor_summary.json
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas   48327 Jul 28 05:52 log.45759065._000007.job.log.tgz.1
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas   11830 Jul 28 05:54 heartbeat.json
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas      95 Jul 28 05:55 pilot_heartbeat.json
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas     744 Jul 28 05:55 pilotlog.txt
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas  119904 Jul 28 05:55 log.45759065._000007.job.log.1
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas     188 Jul 28 05:55 output.list
2025-07-28 13:55:23 (8888): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 28 05:55 runtime_log
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas  194560 Jul 28 05:55 result.tar.gz
2025-07-28 13:55:23 (8888): Guest Log: -rw-r--r--. 1 atlas atlas    8428 Jul 28 05:55 runtime_log.err
2025-07-28 13:55:23 (8888): Guest Log: -rw-------. 1 atlas atlas     637 Jul 28 05:55 pBQMDmzV4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAfTLDmtp3iin.diag
2025-07-28 13:55:23 (8888): Guest Log: Looking for outputfile HITS.45759065._000007.pool.root.1
2025-07-28 13:55:23 (8888): Guest Log: No HITS file was produced
2025-07-28 13:55:23 (8888): Guest Log: Successfully finished the ATLAS job!
2025-07-28 13:55:23 (8888): Guest Log: Copying the results back to the shared directory!
2025-07-28 13:55:23 (8888): Guest Log:  *** Contents of shared directory: ***
2025-07-28 13:55:24 (8888): Guest Log: total 227900
2025-07-28 13:55:24 (8888): Guest Log: -rwxrwxrwx. 1 root root 232601755 Jul 28 05:37 ATLAS.root_0
2025-07-28 13:55:24 (8888): Guest Log: -rwxrwxrwx. 1 root root      5993 Jul 28 05:37 init_data.xml
2025-07-28 13:55:24 (8888): Guest Log: -rwxrwxrwx. 1 root root    542875 Jul 27 03:08 input.tar.gz
2025-07-28 13:55:24 (8888): Guest Log: -rwxrwxrwx. 1 root root    194560 Jul 28 05:55 result.tar.gz
2025-07-28 13:55:24 (8888): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 27 03:08 start_atlas.sh
2025-07-28 13:55:24 (8888): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-28 13:55:24 (8888): VM Completion File Detected.
2025-07-28 13:55:24 (8888): Powering off VM.
2025-07-28 13:55:25 (8888): Successfully stopped VM.
2025-07-28 13:55:25 (8888): Deregistering VM. (boinc_c812ad03240dcd39, slot#0)
2025-07-28 13:55:25 (8888): Removing network bandwidth throttle group from VM.
2025-07-28 13:55:26 (8888): Removing VM from VirtualBox.
13:55:31 (8888): called boinc_finish(0)

</stderr_txt>
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