Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 16:55:14 (9500): Detected: vboxwrapper 26206
2025-07-27 16:55:14 (9500): Detected: BOINC client v7.16.20
2025-07-27 16:55:15 (9500): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-07-27 16:55:16 (9500): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 16:55:16 (9500): Create VM. (boinc_34d2c6f3b3fd7c5c, slot#0)
2025-07-27 16:55:17 (9500): Setting Memory Size for VM. (4800MB)
2025-07-27 16:55:17 (9500): Setting CPU Count for VM. (8)
2025-07-27 16:55:17 (9500): Setting Chipset Options for VM.
2025-07-27 16:55:17 (9500): Setting Graphics Controller Options for VM.
2025-07-27 16:55:18 (9500): Setting Boot Options for VM.
2025-07-27 16:55:18 (9500): Setting Network Configuration for NAT.
2025-07-27 16:55:18 (9500): Enabling VM Network Access.
2025-07-27 16:55:18 (9500): Disabling USB Support for VM.
2025-07-27 16:55:19 (9500): Disabling COM Port Support for VM.
2025-07-27 16:55:19 (9500): Disabling LPT Port Support for VM.
2025-07-27 16:55:19 (9500): Disabling Audio Support for VM.
2025-07-27 16:55:19 (9500): Disabling Clipboard Support for VM.
2025-07-27 16:55:20 (9500): Disabling Drag and Drop Support for VM.
2025-07-27 16:55:20 (9500): Adding storage controller(s) to VM.
2025-07-27 16:55:20 (9500): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 16:55:21 (9500): Adding VirtualBox Guest Additions to VM.
2025-07-27 16:55:22 (9500): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 16:55:22 (9500): forwarding host port 56626 to guest port 80
2025-07-27 16:55:22 (9500): Enabling remote desktop for VM.
2025-07-27 16:55:22 (9500): Required extension pack not installed, remote desktop not enabled.
2025-07-27 16:55:22 (9500): Enabling shared directory for VM.
2025-07-27 16:55:23 (9500): Starting VM using VBoxManage interface. (boinc_34d2c6f3b3fd7c5c, slot#0)
2025-07-27 16:55:28 (9500): Successfully started VM. (PID = '6356')
2025-07-27 16:55:28 (9500): Reporting VM Process ID to BOINC.
2025-07-27 16:55:28 (9500): Guest Log: BIOS: VirtualBox 6.0.14
2025-07-27 16:55:28 (9500): Guest Log: CPUID EDX: 0x178bfbff
2025-07-27 16:55:28 (9500): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 16:55:28 (9500): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 16:55:28 (9500): Detected: Web Application Enabled (http://localhost:56626)
2025-07-27 16:55:28 (9500): Preference change detected
2025-07-27 16:55:28 (9500): Setting CPU throttle for VM. (100%)
2025-07-27 16:55:28 (9500): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 16:55:30 (9500): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 16:55:30 (9500): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 16:55:33 (9500): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 16:55:33 (9500): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 16:55:33 (9500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 16:55:45 (9500): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 16:55:45 (9500): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 16:56:08 (9500): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 16:56:08 (9500): Guest Log: 00:00:00.000338 main     Log opened 2025-07-27T16:56:06.192906000Z
2025-07-27 16:56:08 (9500): Guest Log: 00:00:00.000974 main     OS Product: Linux
2025-07-27 16:56:08 (9500): Guest Log: 00:00:00.001399 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 16:56:08 (9500): Guest Log: 00:00:00.001592 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 16:56:08 (9500): Guest Log: 00:00:00.001663 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 16:56:08 (9500): Guest Log: 00:00:00.001666 main     Process ID: 1389
2025-07-27 16:56:08 (9500): Guest Log: 00:00:00.001668 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 16:56:08 (9500): Guest Log: 00:00:00.003977 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 16:56:08 (9500): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 16:56:08 (9500): Guest Log: [INFO] Mounting shared directory
2025-07-27 16:56:08 (9500): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 16:56:18 (9500): Guest Log: 00:00:10.008551 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 788 344 034 000ns (GuestNow=1 753 606 577 855 515 000 ns GuestLast=1 753 635 366 199 549 000 ns fSetTimeLastLoop=true )
2025-07-27 16:56:31 (9500): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 16:56:31 (9500): Guest Log: [INFO] Detected branch: prod
2025-07-27 16:56:32 (9500): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 16:56:32 (9500): Guest Log: Copying input files
2025-07-27 16:56:34 (9500): Guest Log: Copied input files into RunAtlas.
2025-07-27 16:56:35 (9500): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-27 16:56:35 (9500): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-27 16:56:35 (9500): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-27 16:56:35 (9500): Guest Log: Further information can be found at the LHC@home message board.
2025-07-27 16:57:09 (9500): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 16:57:18 (9500): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 16:57:18 (9500): Guest Log: 2.6.3.0 1669 0 32224 148805 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-27 16:57:22 (9500): Guest Log: copied the webapp to /var/www
2025-07-27 16:57:22 (9500): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-27 16:57:22 (9500): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-27 16:57:23 (9500): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 16:57:23 (9500): Guest Log:  *** Starting ATLAS job. (PandaID=6745919241 taskID=45758458) ***
2025-07-27 18:35:34 (9500): Status Report: Elapsed Time: '6000.000000'
2025-07-27 18:35:34 (9500): Status Report: CPU Time: '35021.078125'
2025-07-27 20:14:44 (9500): Guest Log:  *** Job finished ***
2025-07-27 20:14:44 (9500): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:13:57,476 | INFO     | all workflow threads have been joined
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:13:57,476 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:13:57,477 | INFO     | traces error code: 0
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:13:57,478 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:39,859 | INFO     | PID=6044 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:39,860 | INFO     | found 0 job(s) in 20 queues
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:39,860 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:39,860 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:39,860 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:39,861 | INFO     | [monitor] control thread has ended
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,138 [wrapper] ==== pilot stdout END ====
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,153 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,168 [wrapper] pilotpid: 6044
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,182 [wrapper] Pilot exit status: 0
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,779 [wrapper] pandaids: 6745919241
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,896 [wrapper] cleanup supervisor_pilot  8785 6045
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,926 [wrapper] Test setup, not cleaning
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,942 [wrapper] apfmon messages muted
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,957 [wrapper] ==== wrapper stdout END ====
2025-07-27 20:14:44 (9500): Guest Log: 2025-07-27 12:14:40,973 [wrapper] ==== wrapper stderr END ====
2025-07-27 20:14:44 (9500): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 20:14:44 (9500): Guest Log:     "exeErrorCode": 0,
2025-07-27 20:14:44 (9500): Guest Log:     "exeErrorDiag": "",
2025-07-27 20:14:44 (9500): Guest Log:     "pilotErrorCode": 0,
2025-07-27 20:14:44 (9500): Guest Log:     "pilotErrorDiag": "",
2025-07-27 20:14:44 (9500): Guest Log:  *** Listing of results directory ***
2025-07-27 20:14:44 (9500): Guest Log: total 174156
2025-07-27 20:14:44 (9500): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 00:29 pilot3.tar.gz
2025-07-27 20:14:44 (9500): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 00:30 queuedata.json
2025-07-27 20:14:44 (9500): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 00:32 runpilot2-wrapper.sh
2025-07-27 20:14:44 (9500): Guest Log: -rwxr-xr-x. 1 atlas atlas      6001 Jul 27 08:56 init_data.xml
2025-07-27 20:14:44 (9500): Guest Log: -rwxr-xr-x. 1 atlas atlas    542882 Jul 27 08:56 input.tar.gz
2025-07-27 20:14:44 (9500): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 27 08:56 start_atlas.sh
2025-07-27 20:14:44 (9500): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 27 08:56 EVNT.45758456._000005.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 20:14:44 (9500): Guest Log: -rw-r--r--. 1 atlas atlas      2564 Jul 27 08:57 pandaJob.out
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas    980109 Jul 27 09:00 agis_schedconf.cvmfs.json
2025-07-27 20:14:44 (9500): Guest Log: drwx------. 4 atlas atlas      4096 Jul 27 09:00 pilot3
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas 171915069 Jul 27 12:12 HITS.45758458._000105.pool.root.1
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas      1033 Jul 27 12:13 memory_monitor_summary.json
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 27 12:13 agis_ddmendpoints.agis.ALL.json
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas    351258 Jul 27 12:13 log.45758458._000105.job.log.tgz.1
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas      7823 Jul 27 12:13 heartbeat.json
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas        95 Jul 27 12:14 pilot_heartbeat.json
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas       744 Jul 27 12:14 pilotlog.txt
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas    957574 Jul 27 12:14 log.45758458._000105.job.log.1
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 12:14 output.list
2025-07-27 20:14:44 (9500): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 12:14 runtime_log
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas   1331200 Jul 27 12:14 result.tar.gz
2025-07-27 20:14:44 (9500): Guest Log: -rw-r--r--. 1 atlas atlas      8606 Jul 27 12:14 runtime_log.err
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas       661 Jul 27 12:14 qg9NDmqU4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqeTLDmktG9Hm.diag
2025-07-27 20:14:44 (9500): Guest Log: Looking for outputfile HITS.45758458._000105.pool.root.1
2025-07-27 20:14:44 (9500): Guest Log: HITS file was successfully produced
2025-07-27 20:14:44 (9500): Guest Log: -rw-------. 1 atlas atlas 171915069 Jul 27 12:12 /home/atlas/RunAtlas/HITS.45758458._000105.pool.root.1
2025-07-27 20:14:47 (9500): Guest Log: Successfully finished the ATLAS job!
2025-07-27 20:14:47 (9500): Guest Log: Copying the results back to the shared directory!
2025-07-27 20:14:47 (9500): Guest Log:  *** Contents of shared directory: ***
2025-07-27 20:14:48 (9500): Guest Log: total 398800
2025-07-27 20:14:48 (9500): Guest Log: -rwxrwxrwx. 1 root root 234551240 Jul 27 08:55 ATLAS.root_0
2025-07-27 20:14:48 (9500): Guest Log: -rwxrwxrwx. 1 root root 171915069 Jul 27 12:14 HITS.pool.root.1
2025-07-27 20:14:48 (9500): Guest Log: -rwxrwxrwx. 1 root root      6001 Jul 27 08:55 init_data.xml
2025-07-27 20:14:48 (9500): Guest Log: -rwxrwxrwx. 1 root root    542882 Jul 27 03:03 input.tar.gz
2025-07-27 20:14:48 (9500): Guest Log: -rwxrwxrwx. 1 root root   1331200 Jul 27 12:14 result.tar.gz
2025-07-27 20:14:48 (9500): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 27 03:03 start_atlas.sh
2025-07-27 20:14:48 (9500): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 20:14:48 (9500): VM Completion File Detected.
2025-07-27 20:14:48 (9500): Powering off VM.
2025-07-27 20:14:49 (9500): Successfully stopped VM.
2025-07-27 20:14:49 (9500): Deregistering VM. (boinc_34d2c6f3b3fd7c5c, slot#0)
2025-07-27 20:14:49 (9500): Removing network bandwidth throttle group from VM.
2025-07-27 20:14:49 (9500): Removing VM from VirtualBox.
20:14:54 (9500): called boinc_finish(0)

</stderr_txt>
]]>

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