Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:39:45 (2529125): wrapper (7.7.26015): starting
17:39:45 (2529125): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 17:39:45] Arguments: --nthreads 4
[2025-07-27 17:39:45] Threads: 4
[2025-07-27 17:39:45] Checking for CVMFS
[2025-07-27 17:39:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:39:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:39:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:39:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:39:46] 2.9.2.0 1072976 4473 96484 148817 1 57 29284921 36864000 0 130560 0 3744429 99.991 163356 1863 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 17:39:46] CVMFS is ok
[2025-07-27 17:39:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:39:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:39:46] Further information can be found at the LHC@home message board.
[2025-07-27 17:39:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:39:46] Checking for apptainer binary...
[2025-07-27 17:39:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:39:46] Running /usr/bin/apptainer --version
[2025-07-27 17:39:46] apptainer version 1.4.1-1.1
[2025-07-27 17:39:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:39:46] thA373a
[2025-07-27 17:39:46] apptainer works
[2025-07-27 17:39:46] Set ATHENA_PROC_NUMBER=4
[2025-07-27 17:39:46] Set ATHENA_CORE_NUMBER=4
[2025-07-27 17:39:46] Starting ATLAS job with PandaID=6744843500
[2025-07-27 17:39:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:47:24]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | extracted standard info from prmon json
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | wrong length of table data, x=[1753630816.0, 1753630877.0, 1753630938.0, 1753630999.0, 1753631060.0], y=[2760.0, 1313318.0, 1451694.0, 2406204.0, 2388436.0] (must 
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | could have reported an average CPU frequency of 3573 MHz (4 samples)
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | ..............................
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . Timing measurements:
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . get job = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . initial setup = 1 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . payload setup = 4 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . stage-in = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . payload execution = 275 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . stage-out = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . log creation = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | ..............................
[2025-07-27 17:47:24] 2025-07-27 15:46:51,353 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 17:47:24] 2025-07-27 15:46:51,353 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6744843500/pilotlog.txt
[2025-07-27 17:47:24] 2025-07-27 15:46:51,367 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-27 17:47:24] - Log from pilotlog.txt -
[2025-07-27 17:47:24] 2025-07-27 15:46:51,351 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6744843500/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | extracted standard info from prmon json
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | wrong length of table data, x=[1753630816.0, 1753630877.0, 1753630938.0, 1753630999.0, 1753631060.0], y=[2760.0, 1313318.0, 1451694.0, 2406204.0, 2388436.0] (must 
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | could have reported an average CPU frequency of 3573 MHz (4 samples)
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | ..............................
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . Timing measurements:
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . get job = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . initial setup = 1 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . payload setup = 4 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . stage-in = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . payload execution = 275 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . stage-out = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . log creation = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | ..............................
[2025-07-27 17:47:24] 2025-07-27 15:46:51,353 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 17:47:24] 2025-07-27 15:46:51,353 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6744843500/pilotlog.txt
[2025-07-27 17:47:24] 2025-07-27 15:46:51,367 | WARNING  | 
[2025-07-27 17:47:24] [begin log extracts]
[2025-07-27 17:47:24] - Log from pilotlog.txt -
[2025-07-27 17:47:24] 2025-07-27 15:46:51,351 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6744843500/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | extracted standard info from prmon json
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | WARNING  | wrong length of table data, x=[1753630816.0, 1753630877.0, 1753630938.0, 1753630999.0, 1753631060.0], y=[2760.0, 1313318.0, 1451694.0, 2406204.0, 2388436.0] (must 
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | could have reported an average CPU frequency of 3573 MHz (4 samples)
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | ..............................
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . Timing measurements:
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . get job = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . initial setup = 1 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . payload setup = 4 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . stage-in = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . payload execution = 275 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . stage-out = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | . log creation = 0 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,352 | INFO     | ..............................
[2025-07-27 17:47:24] 2025-07-27 15:46:51,353 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 17:47:24] 2025-07-27 15:46:51,353 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6744843500/pilotlog.txt
[2025-07-27 17:47:24] [end log extracts]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,367 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-27 17:47:24] 2025-07-27 15:46:51,368 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | 
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | job summary report
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | --------------------------------------------------
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | PanDA job id: 6744843500
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | task id: 45743349
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-27 15:44:43,452 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | pilot state: failed 
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | transexitcode: 65
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | exeerrorcode: 65
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | exitcode: 65
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."; P
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | cpuconsumptiontime: 169 s
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | nevents: 0
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | neventsw: 0
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | pid: 2539462
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | pgrp: 2539462
[2025-07-27 17:47:24] 2025-07-27 15:46:51,409 | INFO     | corecount: 4
[2025-07-27 17:47:24] 2025-07-27 15:46:51,410 | INFO     | event service: False
[2025-07-27 17:47:24] 2025-07-27 15:46:51,410 | INFO     | sizes: {0: 2397470, 3: 2397732, 11: 2397760, 283: 2424312, 284: 2424316, 285: 2428854, 404: 2428992}
[2025-07-27 17:47:24] 2025-07-27 15:46:51,410 | INFO     | --------------------------------------------------
[2025-07-27 17:47:24] 2025-07-27 15:46:51,410 | INFO     | 
[2025-07-27 17:47:24] 2025-07-27 15:46:51,410 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,429 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:47:24] 2025-07-27 15:46:51,430 | INFO     | job 6744843500 has completed (purged errors)
[2025-07-27 17:47:24] 2025-07-27 15:46:51,430 | INFO     | overall cleanup function is called
[2025-07-27 17:47:24] 2025-07-27 15:46:52,436 | INFO     | --- collectZombieJob: --- 10, [2539462]
[2025-07-27 17:47:24] 2025-07-27 15:46:52,436 | INFO     | zombie collector waiting for pid 2539462
[2025-07-27 17:47:24] 2025-07-27 15:46:52,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:47:24] 2025-07-27 15:46:52,436 | INFO     | collected zombie processes
[2025-07-27 17:47:24] 2025-07-27 15:46:52,437 | INFO     | will attempt to kill all subprocesses of pid=2539462
[2025-07-27 17:47:24] 2025-07-27 15:46:52,490 | INFO     | process IDs to be killed: [2539462] (in reverse order)
[2025-07-27 17:47:24] 2025-07-27 15:46:52,526 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:47:24] 2025-07-27 15:46:52,526 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:47:24] 2025-07-27 15:46:52,528 | INFO     | did not find any defunct processes belonging to 2539462
[2025-07-27 17:47:24] 2025-07-27 15:46:52,529 | INFO     | did not find any defunct processes belonging to 2539462
[2025-07-27 17:47:24] 2025-07-27 15:46:52,530 | INFO     | ready for new job
[2025-07-27 17:47:24] 2025-07-27 15:46:52,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:47:24] 2025-07-27 15:46:52,530 | INFO     | ***************************************
[2025-07-27 17:47:24] 2025-07-27 15:46:52,530 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:47:24] 2025-07-27 15:46:52,530 | INFO     | ***************************************
[2025-07-27 17:47:24] 2025-07-27 15:46:52,530 | INFO     | 
[2025-07-27 17:47:24] 2025-07-27 15:46:52,531 | INFO     | architecture information:
[2025-07-27 17:47:24] 2025-07-27 15:46:52,531 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:47:24] 2025-07-27 15:46:52,545 | INFO     | cat /etc/os-release:
[2025-07-27 17:47:24] NAME="CentOS Linux"
[2025-07-27 17:47:24] VERSION="7 (Core)"
[2025-07-27 17:47:24] ID="centos"
[2025-07-27 17:47:24] ID_LIKE="rhel fedora"
[2025-07-27 17:47:24] VERSION_ID="7"
[2025-07-27 17:47:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:47:24] ANSI_COLOR="0;31"
[2025-07-27 17:47:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:47:24] HOME_URL="https://www.centos.org/"
[2025-07-27 17:47:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:47:24] 
[2025-07-27 17:47:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:47:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:47:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:47:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:47:24] 
[2025-07-27 17:47:24] 2025-07-27 15:46:52,546 | INFO     | ***************************************
[2025-07-27 17:47:24] 2025-07-27 15:46:53,049 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 17:47:24] 2025-07-27 15:46:53,066 | INFO     | sufficient remaining disk space (325930975232 B)
[2025-07-27 17:47:24] 2025-07-27 15:46:53,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:47:24] 2025-07-27 15:46:53,067 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:47:24] 2025-07-27 15:46:53,067 | INFO     | update_server=False
[2025-07-27 17:47:24] 2025-07-27 15:46:53,067 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:47:24] 2025-07-27 15:46:53,067 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:47:24] 2025-07-27 15:46:53,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:47:24] 2025-07-27 15:46:53,067 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:47:24] 2025-07-27 15:46:53,067 | INFO     | aborting loop
[2025-07-27 17:47:24] 2025-07-27 15:46:53,172 | INFO     | all job control threads have been joined
[2025-07-27 17:47:24] 2025-07-27 15:46:53,395 | INFO     | all payload control threads have been joined
[2025-07-27 17:47:24] 2025-07-27 15:46:53,980 | INFO     | all data control threads have been joined
[2025-07-27 17:47:24] 2025-07-27 15:46:54,072 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:54,073 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:54,073 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:54,178 | INFO     | [job] control thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:54,224 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:54,400 | INFO     | [payload] control thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:54,453 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:54,986 | INFO     | [data] control thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:55,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:55,073 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:55,183 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:55,229 | INFO     | [job] validate thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:55,334 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:55,439 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:55,491 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:46:55,665 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:47:24] 2025-07-27 15:46:59,672 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:47:24] 2025-07-27 15:47:00,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310528550720)>', '<ExcThread(monitor, started 140310155859712)>']
[2025-07-27 17:47:24] 2025-07-27 15:47:05,167 | INFO     | all workflow threads have been joined
[2025-07-27 17:47:24] 2025-07-27 15:47:05,167 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:47:24] 2025-07-27 15:47:05,168 | INFO     | traces error code: 0
[2025-07-27 17:47:24] 2025-07-27 15:47:05,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:47:24] 2025-07-27 15:47:24,076 | INFO     | PID=2532829 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:47:24] 2025-07-27 15:47:24,076 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:47:24] 2025-07-27 15:47:24,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:47:24] 2025-07-27 15:47:24,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:47:24] 2025-07-27 15:47:24,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:47:24] 2025-07-27 15:47:24,077 | INFO     | [monitor] control thread has ended
[2025-07-27 17:47:24] 2025-07-27 15:47:24,152 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:47:24] 2025-07-27 15:47:24,156 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:47:24] 2025-07-27 15:47:24,160 [wrapper] pilotpid: 2532829
[2025-07-27 17:47:24] 2025-07-27 15:47:24,164 [wrapper] Pilot exit status: 0
[2025-07-27 17:47:24] 2025-07-27 15:47:24,176 [wrapper] pandaids: 6744843500
[2025-07-27 17:47:24] 2025-07-27 15:47:24,199 [wrapper] cleanup supervisor_pilot 2532835 2532830
[2025-07-27 17:47:24] 2025-07-27 15:47:24,203 [wrapper] Test setup, not cleaning
[2025-07-27 17:47:24] 2025-07-27 15:47:24,207 [wrapper] apfmon messages muted
[2025-07-27 17:47:24] 2025-07-27 15:47:24,211 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:47:24] 2025-07-27 15:47:24,214 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:47:24]  *** Error codes and diagnostics ***
[2025-07-27 17:47:24]     "exeErrorCode": 65,
[2025-07-27 17:47:24]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 8007.15 KB/s",
[2025-07-27 17:47:24]     "pilotErrorCode": 1305,
[2025-07-27 17:47:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2025-07-27 17:47:24]  *** Listing of results directory ***
[2025-07-27 17:47:24] total 228552
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc    530466 Jul 24 19:03 pilot3.tar.gz
[2025-07-27 17:47:24] -rwx------ 1 boinc boinc     36292 Jul 24 19:21 runpilot2-wrapper.sh
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc      5112 Jul 24 19:21 queuedata.json
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc       100 Jul 27 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:47:24] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 17:39 run_atlas
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc       105 Jul 27 17:39 job.xml
[2025-07-27 17:47:24] -rw-r--r-- 2 boinc boinc 229748071 Jul 27 17:39 EVNT.45743347._000169.pool.root.1
[2025-07-27 17:47:24] -rw-r--r-- 2 boinc boinc    542883 Jul 27 17:39 input.tar.gz
[2025-07-27 17:47:24] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:39 start_atlas.sh
[2025-07-27 17:47:24] drwxrwx--x 2 boinc boinc      4096 Jul 27 17:39 shared
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc         0 Jul 27 17:39 boinc_setup_complete
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc      6380 Jul 27 17:39 init_data.xml
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc         0 Jul 27 17:39 boinc_lockfile
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc      2559 Jul 27 17:39 pandaJob.out
[2025-07-27 17:47:24] -rw------- 1 boinc boinc    980101 Jul 27 17:39 agis_schedconf.cvmfs.json
[2025-07-27 17:47:24] -rw------- 1 boinc boinc   1593052 Jul 27 17:39 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:47:24] drwx------ 4 boinc boinc      4096 Jul 27 17:39 pilot3
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc       526 Jul 27 17:44 boinc_task_state.xml
[2025-07-27 17:47:24] -rw------- 1 boinc boinc      1009 Jul 27 17:44 memory_monitor_summary.json
[2025-07-27 17:47:24] -rw------- 1 boinc boinc    112927 Jul 27 17:44 log.45743349._003056.job.log.tgz.1
[2025-07-27 17:47:24] -rw------- 1 boinc boinc      9859 Jul 27 17:46 heartbeat.json
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc      8192 Jul 27 17:47 boinc_mmap_file
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc        24 Jul 27 17:47 wrapper_checkpoint.txt
[2025-07-27 17:47:24] -rw------- 1 boinc boinc       747 Jul 27 17:47 pilotlog.txt
[2025-07-27 17:47:24] -rw------- 1 boinc boinc        95 Jul 27 17:47 pilot_heartbeat.json
[2025-07-27 17:47:24] -rw------- 1 boinc boinc     94868 Jul 27 17:47 log.45743349._003056.job.log.1
[2025-07-27 17:47:24] -rw------- 1 boinc boinc       188 Jul 27 17:47 output.list
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc       620 Jul 27 17:47 runtime_log
[2025-07-27 17:47:24] -rw------- 1 boinc boinc    225280 Jul 27 17:47 result.tar.gz
[2025-07-27 17:47:24] -rw------- 1 boinc boinc       651 Jul 27 17:47 y0XNDmKoEz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3hMLDmNXbDRn.diag
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc      8586 Jul 27 17:47 runtime_log.err
[2025-07-27 17:47:24] -rw-r--r-- 1 boinc boinc     22548 Jul 27 17:47 stderr.txt
[2025-07-27 17:47:24] No HITS result produced
[2025-07-27 17:47:24]  *** Contents of shared directory: ***
[2025-07-27 17:47:24] total 225136
[2025-07-27 17:47:24] -rw-r--r-- 2 boinc boinc 229748071 Jul 27 17:39 ATLAS.root_0
[2025-07-27 17:47:24] -rw-r--r-- 2 boinc boinc    542883 Jul 27 17:39 input.tar.gz
[2025-07-27 17:47:24] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:39 start_atlas.sh
[2025-07-27 17:47:24] -rw------- 1 boinc boinc    225280 Jul 27 17:47 result.tar.gz
17:47:25 (2529125): run_atlas exited; CPU time 160.417222
17:47:25 (2529125): called boinc_finish(0)

</stderr_txt>
]]>

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