Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:31:43 (2716272): wrapper (7.7.26015): starting
17:31:43 (2716272): wrapper: running run_atlas (--nthreads 3)
[2025-07-27 17:31:43] Arguments: --nthreads 3
[2025-07-27 17:31:43] Threads: 3
[2025-07-27 17:31:43] Checking for CVMFS
[2025-07-27 17:31:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:31:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:31:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:31:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:31:43] 2.9.2.0 685657 8348 71744 148817 0 56 36078753 36864000 0 130560 0 5313495 99.988 310316 2276 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 17:31:43] CVMFS is ok
[2025-07-27 17:31:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:31:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:31:43] Further information can be found at the LHC@home message board.
[2025-07-27 17:31:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:31:43] Checking for apptainer binary...
[2025-07-27 17:31:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:31:43] Running /usr/bin/apptainer --version
[2025-07-27 17:31:43] apptainer version 1.4.1-1.1
[2025-07-27 17:31:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:31:44] thA333
[2025-07-27 17:31:44] apptainer works
[2025-07-27 17:31:44] Set ATHENA_PROC_NUMBER=3
[2025-07-27 17:31:44] Set ATHENA_CORE_NUMBER=3
[2025-07-27 17:31:44] Starting ATLAS job with PandaID=6745775432
[2025-07-27 17:31:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 19:16:19]  *** The last 200 lines of the pilot log: ***
[2025-07-27 19:16:19] 2025-07-27 17:15:43,784 | INFO     | monitor loop #482: job 0:6745775432 is in state 'finished'
[2025-07-27 19:16:19] 2025-07-27 17:15:43,785 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:16:19] 2025-07-27 17:15:46,288 | INFO     | monitor loop #483: job 0:6745775432 is in state 'finished'
[2025-07-27 19:16:19] 2025-07-27 17:15:46,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 19:16:19] 2025-07-27 17:15:47,481 | INFO     | PID=2719927 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:16:19] 2025-07-27 17:15:48,029 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 19:16:19] 2025-07-27 17:15:48,030 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4359.23725
[2025-07-27 19:16:19] 2025-07-27 17:15:48,031 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745775432/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 19:16:19] 2025-07-27 17:15:48,032 | INFO     | extracted standard info from prmon json
[2025-07-27 19:16:19] 2025-07-27 17:15:48,032 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 19:16:19] 2025-07-27 17:15:48,032 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 19:16:19] 2025-07-27 17:15:48,032 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 19:16:19] 2025-07-27 17:15:48,032 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 19:16:19] 2025-07-27 17:15:48,033 | INFO     | fitting pss+swap vs Time
[2025-07-27 19:16:19] 2025-07-27 17:15:48,033 | INFO     | sum of square deviations: 329031285.5
[2025-07-27 19:16:19] 2025-07-27 17:15:48,033 | INFO     | sum of deviations: -3409076560.999999
[2025-07-27 19:16:19] 2025-07-27 17:15:48,033 | INFO     | mean x: 1753633418.5
[2025-07-27 19:16:19] 2025-07-27 17:15:48,033 | INFO     | mean y: 2427499.68627451
[2025-07-27 19:16:19] 2025-07-27 17:15:48,033 | INFO     | -- intersect: 18171734939.585186
[2025-07-27 19:16:19] 2025-07-27 17:15:48,033 | INFO     | intersect: 18171734939.585186
[2025-07-27 19:16:19] 2025-07-27 17:15:48,033 | INFO     | chi2: 1.64522028583249
[2025-07-27 19:16:19] 2025-07-27 17:15:48,033 | INFO     | sum of square deviations: 282974608.0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | sum of deviations: -2717766855.0000014
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | mean x: 1753633266.0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | mean y: 2429790.5773195876
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | -- intersect: 16844811514.665445
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | intersect: 16844811514.665445
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | chi2: 1.6467738877099933
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | current chi2=1.6467738877099933 (change=-0.09443123762099598 %)
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | right removable region: 96
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | sum of square deviations: 282974608.0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | sum of deviations: -17371325751.999996
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | mean x: 1753633571.0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | mean y: 2472496.3608247424
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | -- intersect: 107655029122.51582
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | intersect: 107655029122.51582
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | chi2: 0.10146958049673117
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | current chi2=0.10146958049673117 (change=93.83246235349043 %)
[2025-07-27 19:16:19] 2025-07-27 17:15:48,034 | INFO     | sum of square deviations: 241429643.0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | sum of deviations: -15367758303.999998
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | mean x: 1753633723.5
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | mean y: 2465113.347826087
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | -- intersect: 111626782995.85226
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | intersect: 111626782995.85226
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | chi2: 0.10017920165729988
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | current chi2=0.10017920165729988 (change=1.2716903264154782 %)
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | left removable region: 20
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | sum of square deviations: 136095575.0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | sum of deviations: -9710715294.000004
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | mean x: 1753633845.5
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | mean y: 2449341.8684210526
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | -- intersect: 125128038499.14185
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | intersect: 125128038499.14185
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | chi2: 0.09053161322910873
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | -- intersect: 125128038499.14185
[2025-07-27 19:16:19] 2025-07-27 17:15:48,035 | INFO     | current memory leak: -71.35 B/s (using 76 data points, chi2=0.09)
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | could have reported an average CPU frequency of 4317 MHz (7 samples)
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | ..............................
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | . Timing measurements:
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | . get job = 0 s
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | . initial setup = 1 s
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | . payload setup = 6 s
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | . stage-in = 0 s
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | . payload execution = 6196 s
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | . stage-out = 0 s
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | . log creation = 0 s
[2025-07-27 19:16:19] 2025-07-27 17:15:48,036 | INFO     | ..............................
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | 
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | job summary report
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | --------------------------------------------------
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | PanDA job id: 6745775432
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | task id: 45743349
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | errors: (none)
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | pilot state: finished 
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | transexitcode: 0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | exeerrorcode: 0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | exeerrordiag: 
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | exitcode: 0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | exitmsg: OK
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | cpuconsumptiontime: 18003 s
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | nevents: 400
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | neventsw: 0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | pid: 2726433
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | pgrp: 2726433
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | corecount: 3
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | event service: False
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | sizes: {0: 2397478, 4: 2397740, 11: 2397768, 6206: 2424851, 6208: 2433855, 6210: 2433911, 6219: 2434233}
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | --------------------------------------------------
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | 
[2025-07-27 19:16:19] 2025-07-27 17:15:48,069 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 19:16:19] 2025-07-27 17:15:48,082 | INFO     | job 6745775432 has completed (purged errors)
[2025-07-27 19:16:19] 2025-07-27 17:15:48,082 | INFO     | overall cleanup function is called
[2025-07-27 19:16:19] 2025-07-27 17:15:49,088 | INFO     | --- collectZombieJob: --- 10, [2726433]
[2025-07-27 19:16:19] 2025-07-27 17:15:49,088 | INFO     | zombie collector waiting for pid 2726433
[2025-07-27 19:16:19] 2025-07-27 17:15:49,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 19:16:19] 2025-07-27 17:15:49,090 | INFO     | collected zombie processes
[2025-07-27 19:16:19] 2025-07-27 17:15:49,090 | INFO     | will attempt to kill all subprocesses of pid=2726433
[2025-07-27 19:16:19] 2025-07-27 17:15:49,128 | INFO     | process IDs to be killed: [2726433] (in reverse order)
[2025-07-27 19:16:19] 2025-07-27 17:15:49,153 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 19:16:19] 2025-07-27 17:15:49,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 19:16:19] 2025-07-27 17:15:49,154 | INFO     | did not find any defunct processes belonging to 2726433
[2025-07-27 19:16:19] 2025-07-27 17:15:49,155 | INFO     | did not find any defunct processes belonging to 2726433
[2025-07-27 19:16:19] 2025-07-27 17:15:49,155 | INFO     | ready for new job
[2025-07-27 19:16:19] 2025-07-27 17:15:49,155 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 19:16:19] 2025-07-27 17:15:49,156 | INFO     | ***************************************
[2025-07-27 19:16:19] 2025-07-27 17:15:49,156 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 19:16:19] 2025-07-27 17:15:49,156 | INFO     | ***************************************
[2025-07-27 19:16:19] 2025-07-27 17:15:49,156 | INFO     | 
[2025-07-27 19:16:19] 2025-07-27 17:15:49,156 | INFO     | architecture information:
[2025-07-27 19:16:19] 2025-07-27 17:15:49,156 | INFO     | executing command: cat /etc/os-release
[2025-07-27 19:16:19] 2025-07-27 17:15:49,165 | INFO     | cat /etc/os-release:
[2025-07-27 19:16:19] NAME="CentOS Linux"
[2025-07-27 19:16:19] VERSION="7 (Core)"
[2025-07-27 19:16:19] ID="centos"
[2025-07-27 19:16:19] ID_LIKE="rhel fedora"
[2025-07-27 19:16:19] VERSION_ID="7"
[2025-07-27 19:16:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 19:16:19] ANSI_COLOR="0;31"
[2025-07-27 19:16:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 19:16:19] HOME_URL="https://www.centos.org/"
[2025-07-27 19:16:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 19:16:19] 
[2025-07-27 19:16:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 19:16:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 19:16:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 19:16:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 19:16:19] 
[2025-07-27 19:16:19] 2025-07-27 17:15:49,165 | INFO     | ***************************************
[2025-07-27 19:16:19] 2025-07-27 17:15:49,668 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 19:16:19] 2025-07-27 17:15:49,681 | INFO     | sufficient remaining disk space (218965737472 B)
[2025-07-27 19:16:19] 2025-07-27 17:15:49,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 19:16:19] 2025-07-27 17:15:49,682 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 19:16:19] 2025-07-27 17:15:49,682 | INFO     | update_server=False
[2025-07-27 19:16:19] 2025-07-27 17:15:49,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 19:16:19] 2025-07-27 17:15:49,682 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 19:16:19] 2025-07-27 17:15:49,682 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 19:16:19] 2025-07-27 17:15:49,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:16:19] 2025-07-27 17:15:49,688 | INFO     | all payload control threads have been joined
[2025-07-27 19:16:19] 2025-07-27 17:15:49,715 | INFO     | all data control threads have been joined
[2025-07-27 19:16:19] 2025-07-27 17:15:49,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 19:16:19] 2025-07-27 17:15:49,797 | INFO     | aborting loop
[2025-07-27 19:16:19] 2025-07-27 17:15:50,688 | INFO     | [job] retrieve thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:50,688 | INFO     | [job] queue monitor thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:50,694 | INFO     | [payload] control thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:50,720 | INFO     | [data] control thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:50,754 | INFO     | [payload] validate_post thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:50,803 | INFO     | [job] job monitor thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:51,029 | INFO     | [data] copytool_in thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:51,040 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:51,224 | INFO     | all job control threads have been joined
[2025-07-27 19:16:19] 2025-07-27 17:15:51,592 | INFO     | [job] validate thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:51,688 | INFO     | [data] copytool_out thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:51,780 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:51,817 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:51,828 | INFO     | [payload] failed_post thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:52,045 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:52,230 | INFO     | [job] control thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:53,689 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 19:16:19] 2025-07-27 17:15:54,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139901653645120)>', '<ExcThread(monitor, started 139901026686720)>']
[2025-07-27 19:16:19] 2025-07-27 17:15:59,383 | INFO     | all workflow threads have been joined
[2025-07-27 19:16:19] 2025-07-27 17:15:59,383 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 19:16:19] 2025-07-27 17:15:59,384 | INFO     | traces error code: 0
[2025-07-27 19:16:19] 2025-07-27 17:15:59,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 19:16:19] 2025-07-27 17:16:19,629 | INFO     | PID=2719927 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 19:16:19] 2025-07-27 17:16:19,630 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 19:16:19] 2025-07-27 17:16:19,630 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 19:16:19] 2025-07-27 17:16:19,630 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 19:16:19] 2025-07-27 17:16:19,630 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 19:16:19] 2025-07-27 17:16:19,630 | INFO     | [monitor] control thread has ended
[2025-07-27 19:16:19] 2025-07-27 17:16:19,682 [wrapper] ==== pilot stdout END ====
[2025-07-27 19:16:19] 2025-07-27 17:16:19,685 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 19:16:19] 2025-07-27 17:16:19,687 [wrapper] pilotpid: 2719927
[2025-07-27 19:16:19] 2025-07-27 17:16:19,690 [wrapper] Pilot exit status: 0
[2025-07-27 19:16:19] 2025-07-27 17:16:19,697 [wrapper] pandaids: 6745775432
[2025-07-27 19:16:19] 2025-07-27 17:16:19,715 [wrapper] cleanup supervisor_pilot 2738610 2719928
[2025-07-27 19:16:19] 2025-07-27 17:16:19,718 [wrapper] Test setup, not cleaning
[2025-07-27 19:16:19] 2025-07-27 17:16:19,720 [wrapper] apfmon messages muted
[2025-07-27 19:16:19] 2025-07-27 17:16:19,723 [wrapper] ==== wrapper stdout END ====
[2025-07-27 19:16:19] 2025-07-27 17:16:19,726 [wrapper] ==== wrapper stderr END ====
[2025-07-27 19:16:19]  *** Error codes and diagnostics ***
[2025-07-27 19:16:19]     "exeErrorCode": 0,
[2025-07-27 19:16:19]     "exeErrorDiag": "",
[2025-07-27 19:16:19]     "pilotErrorCode": 0,
[2025-07-27 19:16:19]     "pilotErrorDiag": "",
[2025-07-27 19:16:19]  *** Listing of results directory ***
[2025-07-27 19:16:19] total 436780
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc    530466 Jul 26 23:23 pilot3.tar.gz
[2025-07-27 19:16:19] -rwx------ 1 boinc boinc     36292 Jul 26 23:30 runpilot2-wrapper.sh
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc      5112 Jul 26 23:30 queuedata.json
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc       100 Jul 27 17:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 19:16:19] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 17:31 run_atlas
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc       105 Jul 27 17:31 job.xml
[2025-07-27 19:16:19] -rw-r--r-- 2 boinc boinc 228466854 Jul 27 17:31 EVNT.45743347._002562.pool.root.1
[2025-07-27 19:16:19] -rw-r--r-- 2 boinc boinc    542897 Jul 27 17:31 input.tar.gz
[2025-07-27 19:16:19] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:31 start_atlas.sh
[2025-07-27 19:16:19] drwxrwx--x 2 boinc boinc      4096 Jul 27 17:31 shared
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc         0 Jul 27 17:31 boinc_setup_complete
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc      6199 Jul 27 17:31 init_data.xml
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc         0 Jul 27 17:31 boinc_lockfile
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc      2563 Jul 27 17:31 pandaJob.out
[2025-07-27 19:16:19] -rw------- 1 boinc boinc    980101 Jul 27 17:31 agis_schedconf.cvmfs.json
[2025-07-27 19:16:19] -rw------- 1 boinc boinc   1593052 Jul 27 17:31 agis_ddmendpoints.agis.ALL.json
[2025-07-27 19:16:19] drwx------ 4 boinc boinc      4096 Jul 27 17:31 pilot3
[2025-07-27 19:16:19] -rw------- 1 boinc boinc 213209265 Jul 27 19:15 HITS.45743349._044799.pool.root.1
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc       529 Jul 27 19:15 boinc_task_state.xml
[2025-07-27 19:16:19] -rw------- 1 boinc boinc        95 Jul 27 19:15 pilot_heartbeat.json
[2025-07-27 19:16:19] -rw------- 1 boinc boinc      1019 Jul 27 19:15 memory_monitor_summary.json
[2025-07-27 19:16:19] -rw------- 1 boinc boinc    254040 Jul 27 19:15 log.45743349._044799.job.log.tgz.1
[2025-07-27 19:16:19] -rw------- 1 boinc boinc      7764 Jul 27 19:15 heartbeat.json
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc      8192 Jul 27 19:16 boinc_mmap_file
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc        27 Jul 27 19:16 wrapper_checkpoint.txt
[2025-07-27 19:16:19] -rw------- 1 boinc boinc       747 Jul 27 19:16 pilotlog.txt
[2025-07-27 19:16:19] -rw------- 1 boinc boinc    597856 Jul 27 19:16 log.45743349._044799.job.log.1
[2025-07-27 19:16:19] -rw------- 1 boinc boinc       357 Jul 27 19:16 output.list
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc       620 Jul 27 19:16 runtime_log
[2025-07-27 19:16:19] -rw------- 1 boinc boinc    870400 Jul 27 19:16 result.tar.gz
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc      8734 Jul 27 19:16 runtime_log.err
[2025-07-27 19:16:19] -rw------- 1 boinc boinc       659 Jul 27 19:16 ilbKDm5d1z7n9Rq4apOajLDm4fhM0noT9bVof3QYDm2T1KDmrqm5Pn.diag
[2025-07-27 19:16:19] -rw-r--r-- 1 boinc boinc     21273 Jul 27 19:16 stderr.txt
[2025-07-27 19:16:19] HITS file was successfully produced:
[2025-07-27 19:16:19] -rw------- 1 boinc boinc 213209265 Jul 27 19:15 shared/HITS.pool.root.1
[2025-07-27 19:16:19]  *** Contents of shared directory: ***
[2025-07-27 19:16:19] total 432740
[2025-07-27 19:16:19] -rw-r--r-- 2 boinc boinc 228466854 Jul 27 17:31 ATLAS.root_0
[2025-07-27 19:16:19] -rw-r--r-- 2 boinc boinc    542897 Jul 27 17:31 input.tar.gz
[2025-07-27 19:16:19] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:31 start_atlas.sh
[2025-07-27 19:16:19] -rw------- 1 boinc boinc 213209265 Jul 27 19:15 HITS.pool.root.1
[2025-07-27 19:16:19] -rw------- 1 boinc boinc    870400 Jul 27 19:16 result.tar.gz
19:16:21 (2716272): run_atlas exited; CPU time 18031.388555
19:16:21 (2716272): called boinc_finish(0)

</stderr_txt>
]]>

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