Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:29:09 (385958): wrapper (7.7.26015): starting
22:29:09 (385958): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 22:29:09] Arguments: --nthreads 8
[2025-07-26 22:29:09] Threads: 8
[2025-07-26 22:29:09] Checking for CVMFS
[2025-07-26 22:29:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 22:29:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 22:29:09] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 22:29:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 22:29:09] 2.13.1.0 116762 7794 205928 148797 0 188 34684648 40960000 12650 16776704 0 106794075 99.999 306458 37703 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 22:29:09] CVMFS is ok
[2025-07-26 22:29:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 22:29:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 22:29:09] Further information can be found at the LHC@home message board.
[2025-07-26 22:29:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 22:29:09] Checking for apptainer binary...
[2025-07-26 22:29:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 22:29:09] Running /usr/bin/apptainer --version
[2025-07-26 22:29:09] apptainer version 1.4.1-1.el9
[2025-07-26 22:29:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 22:29:09] c-208-39.aglt2.org
[2025-07-26 22:29:09] apptainer works
[2025-07-26 22:29:09] Set ATHENA_PROC_NUMBER=8
[2025-07-26 22:29:09] Set ATHENA_CORE_NUMBER=8
[2025-07-26 22:29:09] Starting ATLAS job with PandaID=6745775633
[2025-07-26 22:29:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:27:13]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:27:13]  guid=7030c21d-9db4-4738-a13a-fdc5fa830a98
[2025-07-26 23:27:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-26 23:27:13]  is_altstaged=None
[2025-07-26 23:27:13]  is_tar=False
[2025-07-26 23:27:13]  lfn=log.45743349._045000.job.log.tgz.1
[2025-07-26 23:27:13]  mtime=0
[2025-07-26 23:27:13]  protocol_id=None
[2025-07-26 23:27:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 23:27:13]  replicas=None
[2025-07-26 23:27:13]  scope=mc23_13p6TeV
[2025-07-26 23:27:13]  status=None
[2025-07-26 23:27:13]  status_code=0
[2025-07-26 23:27:13]  storage_token=
[2025-07-26 23:27:13]  surl=/tmp/boinchome/slots/12/PanDA_Pilot-6745775633/log.45743349._045000.job.log.tgz.1
[2025-07-26 23:27:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/1a/log.45743349._045000.job.log.tgz.1
[2025-07-26 23:27:13]  workdir=None
[2025-07-26 23:27:13] ]
[2025-07-26 23:27:13] 2025-07-27 03:26:36,745 | INFO     | transferring file log.45743349._045000.job.log.tgz.1 from /tmp/boinchome/slots/12/PanDA_Pilot-6745775633/log.45743349._045000.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-26 23:27:13] 2025-07-27 03:26:36,745 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/12/PanDA_Pilot-6745775633/log.45743349._045000.job.log.tgz.1 /tmp/boinchome/slots/12/log.45743349._045000.j
[2025-07-26 23:27:13] 2025-07-27 03:26:36,768 | INFO     | adding to output.list: log.45743349._045000.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/1a/log.45743349._045000.job.log.tg
[2025-07-26 23:27:13] 2025-07-27 03:26:36,769 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 23:27:13] 2025-07-27 03:26:36,769 | INFO     | summary of transferred files:
[2025-07-26 23:27:13] 2025-07-27 03:26:36,769 | INFO     |  -- lfn=log.45743349._045000.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 23:27:13] 2025-07-27 03:26:36,769 | INFO     | stage-out finished correctly
[2025-07-26 23:27:13] 2025-07-27 03:26:36,825 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 23:27:13] 2025-07-27 03:26:37,802 | INFO     | job 6745775633 has state=finished
[2025-07-26 23:27:13] 2025-07-27 03:26:37,802 | INFO     | preparing for final server update for job 6745775633 in state='finished'
[2025-07-26 23:27:13] 2025-07-27 03:26:37,802 | INFO     | this job has now completed (state=finished)
[2025-07-26 23:27:13] 2025-07-27 03:26:37,802 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 23:27:13] 2025-07-27 03:26:37,803 | INFO     | log transfer has been attempted: DONE
[2025-07-26 23:27:13] 2025-07-27 03:26:37,803 | INFO     | job 6745775633 has finished - writing final server update
[2025-07-26 23:27:13] 2025-07-27 03:26:37,803 | INFO     | total number of processed events: 400 (read)
[2025-07-26 23:27:13] 2025-07-27 03:26:37,803 | INFO     | executing command: lscpu
[2025-07-26 23:27:13] 2025-07-27 03:26:37,860 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 23:27:13] 2025-07-27 03:26:39,022 | INFO     | monitor loop #255: job 0:6745775633 is in state 'finished'
[2025-07-26 23:27:13] 2025-07-27 03:26:39,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:27:13] 2025-07-27 03:26:39,312 | INFO     | 3443s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-26 23:27:13] 2025-07-27 03:26:41,168 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 23:27:13] 2025-07-27 03:26:41,172 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3735.6130312500018
[2025-07-26 23:27:13] 2025-07-27 03:26:41,185 | INFO     | using path: /tmp/boinchome/slots/12/PanDA_Pilot-6745775633/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:27:13] 2025-07-27 03:26:41,186 | INFO     | extracted standard info from prmon json
[2025-07-26 23:27:13] 2025-07-27 03:26:41,186 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 23:27:13] 2025-07-27 03:26:41,186 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 23:27:13] 2025-07-27 03:26:41,186 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:27:13] 2025-07-27 03:26:41,186 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:27:13] 2025-07-27 03:26:41,187 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:27:13] 2025-07-27 03:26:41,187 | INFO     | sum of square deviations: 36465800.0
[2025-07-26 23:27:13] 2025-07-27 03:26:41,187 | INFO     | sum of deviations: -547914810.0
[2025-07-26 23:27:13] 2025-07-27 03:26:41,187 | INFO     | mean x: 1753585151.0
[2025-07-26 23:27:13] 2025-07-27 03:26:41,187 | INFO     | mean y: 2546746.897959184
[2025-07-26 23:27:13] 2025-07-27 03:26:41,187 | INFO     | -- intersect: 26350940991.066093
[2025-07-26 23:27:13] 2025-07-27 03:26:41,187 | INFO     | intersect: 26350940991.066093
[2025-07-26 23:27:13] 2025-07-27 03:26:41,187 | INFO     | chi2: 0.0008899376097148769
[2025-07-26 23:27:13] 2025-07-27 03:26:41,187 | INFO     | -- intersect: 26350940991.066093
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | current memory leak: -15.03 B/s (using 49 data points, chi2=0.00)
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | could have reported an average CPU frequency of 3755 MHz (5 samples)
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | ..............................
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | . Timing measurements:
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | . get job = 0 s
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | . initial setup = 2 s
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | . payload setup = 5 s
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | . stage-in = 0 s
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | . payload execution = 3414 s
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | . stage-out = 0 s
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | . log creation = 0 s
[2025-07-26 23:27:13] 2025-07-27 03:26:41,188 | INFO     | ..............................
[2025-07-26 23:27:13] 2025-07-27 03:26:41,244 | INFO     | 
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | job summary report
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | --------------------------------------------------
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | PanDA job id: 6745775633
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | task id: 45743349
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | errors: (none)
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | pilot state: finished 
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | transexitcode: 0
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | exeerrorcode: 0
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | exeerrordiag: 
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | exitcode: 0
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | exitmsg: OK
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | cpuconsumptiontime: 25383 s
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | nevents: 400
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | neventsw: 0
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | pid: 403902
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | pgrp: 403902
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | corecount: 8
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | event service: False
[2025-07-26 23:27:13] 2025-07-27 03:26:41,245 | INFO     | sizes: {0: 2397305, 1: 2397504, 4: 2397766, 11: 2397794, 3423: 2423474, 3424: 2432658, 3428: 2432828}
[2025-07-26 23:27:13] 2025-07-27 03:26:41,246 | INFO     | --------------------------------------------------
[2025-07-26 23:27:13] 2025-07-27 03:26:41,246 | INFO     | 
[2025-07-26 23:27:13] 2025-07-27 03:26:41,246 | INFO     | executing command: ls -lF /tmp/boinchome/slots/12
[2025-07-26 23:27:13] 2025-07-27 03:26:41,261 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,261 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | job 6745775633 has completed (purged errors)
[2025-07-26 23:27:13] 2025-07-27 03:26:41,262 | INFO     | overall cleanup function is called
[2025-07-26 23:27:13] 2025-07-27 03:26:42,270 | INFO     | --- collectZombieJob: --- 10, [403902]
[2025-07-26 23:27:13] 2025-07-27 03:26:42,270 | INFO     | zombie collector waiting for pid 403902
[2025-07-26 23:27:13] 2025-07-27 03:26:42,270 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:27:13] 2025-07-27 03:26:42,270 | INFO     | collected zombie processes
[2025-07-26 23:27:13] 2025-07-27 03:26:42,270 | INFO     | will attempt to kill all subprocesses of pid=403902
[2025-07-26 23:27:13] 2025-07-27 03:26:42,596 | INFO     | process IDs to be killed: [403902] (in reverse order)
[2025-07-26 23:27:13] 2025-07-27 03:26:42,717 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:27:13] 2025-07-27 03:26:42,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:27:13] 2025-07-27 03:26:42,733 | INFO     | did not find any defunct processes belonging to 403902
[2025-07-26 23:27:13] 2025-07-27 03:26:42,745 | INFO     | did not find any defunct processes belonging to 403902
[2025-07-26 23:27:13] 2025-07-27 03:26:42,745 | INFO     | ready for new job
[2025-07-26 23:27:13] 2025-07-27 03:26:42,745 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:27:13] 2025-07-27 03:26:42,747 | INFO     | ***************************************
[2025-07-26 23:27:13] 2025-07-27 03:26:42,747 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:27:13] 2025-07-27 03:26:42,747 | INFO     | ***************************************
[2025-07-26 23:27:13] 2025-07-27 03:26:42,747 | INFO     | 
[2025-07-26 23:27:13] 2025-07-27 03:26:42,751 | INFO     | architecture information:
[2025-07-26 23:27:13] 2025-07-27 03:26:42,751 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:27:13] 2025-07-27 03:26:42,765 | INFO     | cat /etc/os-release:
[2025-07-26 23:27:13] NAME="CentOS Linux"
[2025-07-26 23:27:13] VERSION="7 (Core)"
[2025-07-26 23:27:13] ID="centos"
[2025-07-26 23:27:13] ID_LIKE="rhel fedora"
[2025-07-26 23:27:13] VERSION_ID="7"
[2025-07-26 23:27:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:27:13] ANSI_COLOR="0;31"
[2025-07-26 23:27:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:27:13] HOME_URL="https://www.centos.org/"
[2025-07-26 23:27:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:27:13] 
[2025-07-26 23:27:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:27:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:27:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:27:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:27:13] 
[2025-07-26 23:27:13] 2025-07-27 03:26:42,765 | INFO     | ***************************************
[2025-07-26 23:27:13] 2025-07-27 03:26:43,268 | INFO     | executing command: df -mP /tmp/boinchome/slots/12
[2025-07-26 23:27:13] 2025-07-27 03:26:43,286 | INFO     | sufficient remaining disk space (165678153728 B)
[2025-07-26 23:27:13] 2025-07-27 03:26:43,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:27:13] 2025-07-27 03:26:43,286 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:27:13] 2025-07-27 03:26:43,286 | INFO     | update_server=False
[2025-07-26 23:27:13] 2025-07-27 03:26:43,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:27:13] 2025-07-27 03:26:43,286 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:27:13] 2025-07-27 03:26:43,287 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:27:13] 2025-07-27 03:26:43,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:27:13] 2025-07-27 03:26:43,287 | INFO     | aborting loop
[2025-07-26 23:27:13] 2025-07-27 03:26:43,453 | INFO     | all job control threads have been joined
[2025-07-26 23:27:13] 2025-07-27 03:26:43,470 | INFO     | all data control threads have been joined
[2025-07-26 23:27:13] 2025-07-27 03:26:44,291 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:44,292 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:44,385 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:44,431 | INFO     | all payload control threads have been joined
[2025-07-26 23:27:13] 2025-07-27 03:26:44,458 | INFO     | [job] control thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:44,475 | INFO     | [data] control thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:44,504 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:44,704 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:45,030 | INFO     | [job] validate thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:45,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:45,204 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:45,256 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:45,292 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:45,358 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:45,433 | INFO     | [payload] control thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:46,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:27:13] 2025-07-27 03:26:47,257 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:47,292 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:27:13] 2025-07-27 03:26:48,165 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140060105848640)>', '<ExcThread(monitor, started 140059479107328)>']
[2025-07-26 23:27:13] 2025-07-27 03:26:53,191 | INFO     | all workflow threads have been joined
[2025-07-26 23:27:13] 2025-07-27 03:26:53,191 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:27:13] 2025-07-27 03:26:53,191 | INFO     | traces error code: 0
[2025-07-26 23:27:13] 2025-07-27 03:26:53,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:27:13] 2025-07-27 03:27:12,816 | INFO     | PID=396329 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 23:27:13] 2025-07-27 03:27:12,816 | INFO     | .. there are 16 such processes running
[2025-07-26 23:27:13] 2025-07-27 03:27:12,816 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:27:13] 2025-07-27 03:27:12,816 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:27:13] 2025-07-27 03:27:12,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:27:13] 2025-07-27 03:27:12,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:27:13] 2025-07-27 03:27:12,816 | INFO     | [monitor] control thread has ended
[2025-07-26 23:27:13] 2025-07-27 03:27:12,896 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:27:13] 2025-07-27 03:27:12,899 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:27:13] 2025-07-27 03:27:12,901 [wrapper] pilotpid: 396329
[2025-07-26 23:27:13] 2025-07-27 03:27:12,903 [wrapper] Pilot exit status: 0
[2025-07-26 23:27:13] 2025-07-27 03:27:12,913 [wrapper] pandaids: 6745775633
[2025-07-26 23:27:13] 2025-07-27 03:27:12,996 [wrapper] cleanup supervisor_pilot  657312 396330
[2025-07-26 23:27:13] 2025-07-27 03:27:12,999 [wrapper] Test setup, not cleaning
[2025-07-26 23:27:13] 2025-07-27 03:27:13,001 [wrapper] apfmon messages muted
[2025-07-26 23:27:13] 2025-07-27 03:27:13,003 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:27:13] 2025-07-27 03:27:13,006 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:27:13]  *** Error codes and diagnostics ***
[2025-07-26 23:27:13]     "exeErrorCode": 0,
[2025-07-26 23:27:13]     "exeErrorDiag": "",
[2025-07-26 23:27:13]     "pilotErrorCode": 0,
[2025-07-26 23:27:13]     "pilotErrorDiag": "",
[2025-07-26 23:27:13]  *** Listing of results directory ***
[2025-07-26 23:27:13] total 433468
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 17:42 pilot3.tar.gz
[2025-07-26 23:27:13] -rwx------. 1 boincer umatlas     36292 Jul 26 17:42 runpilot2-wrapper.sh
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 17:42 queuedata.json
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas       100 Jul 26 22:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:27:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 22:29 run_atlas
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas       105 Jul 26 22:29 job.xml
[2025-07-26 23:27:13] -rw-r--r--. 2 boincer umatlas 230431818 Jul 26 22:29 EVNT.45743347._002573.pool.root.1
[2025-07-26 23:27:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:29 start_atlas.sh
[2025-07-26 23:27:13] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 22:29 shared
[2025-07-26 23:27:13] -rw-r--r--. 2 boincer umatlas    542891 Jul 26 22:29 input.tar.gz
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas         0 Jul 26 22:29 boinc_lockfile
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 22:29 pandaJob.out
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas    980117 Jul 26 22:29 agis_schedconf.cvmfs.json
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas   1593052 Jul 26 22:29 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:27:13] drwx------. 4 boincer umatlas      4096 Jul 26 22:29 pilot3
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas      7175 Jul 26 23:22 init_data.xml
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas 208297582 Jul 26 23:26 HITS.45743349._045000.pool.root.1
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas       529 Jul 26 23:26 boinc_task_state.xml
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas        95 Jul 26 23:26 pilot_heartbeat.json
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas      1026 Jul 26 23:26 memory_monitor_summary.json
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas    282329 Jul 26 23:26 log.45743349._045000.job.log.tgz.1
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas      7768 Jul 26 23:26 heartbeat.json
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 23:27 boinc_mmap_file
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas        27 Jul 26 23:27 wrapper_checkpoint.txt
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas       822 Jul 26 23:27 pilotlog.txt
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas    351958 Jul 26 23:27 log.45743349._045000.job.log.1
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas       357 Jul 26 23:27 output.list
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas       620 Jul 26 23:27 runtime_log
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas    655360 Jul 26 23:27 result.tar.gz
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas       651 Jul 26 23:27 zs2LDmzp1z7n9Rq4apOajLDm4fhM0noT9bVof3QYDm2U1KDmbsTLsm.diag
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas      8674 Jul 26 23:27 runtime_log.err
[2025-07-26 23:27:13] -rw-r--r--. 1 boincer umatlas     21392 Jul 26 23:27 stderr.txt
[2025-07-26 23:27:13] HITS file was successfully produced:
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas 208297582 Jul 26 23:26 shared/HITS.pool.root.1
[2025-07-26 23:27:13]  *** Contents of shared directory: ***
[2025-07-26 23:27:13] total 429644
[2025-07-26 23:27:13] -rw-r--r--. 2 boincer umatlas 230431818 Jul 26 22:29 ATLAS.root_0
[2025-07-26 23:27:13] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:29 start_atlas.sh
[2025-07-26 23:27:13] -rw-r--r--. 2 boincer umatlas    542891 Jul 26 22:29 input.tar.gz
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas 208297582 Jul 26 23:26 HITS.pool.root.1
[2025-07-26 23:27:13] -rw-------. 1 boincer umatlas    655360 Jul 26 23:27 result.tar.gz
23:27:14 (385958): run_atlas exited; CPU time 25471.292933
23:27:14 (385958): called boinc_finish(0)

</stderr_txt>
]]>

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