Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:31:58 (278039): wrapper (7.7.26015): starting
22:31:58 (278039): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 22:31:58] Arguments: --nthreads 8
[2025-07-26 22:31:58] Threads: 8
[2025-07-26 22:31:58] Checking for CVMFS
[2025-07-26 22:31:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 22:31:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 22:31:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 22:31:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 22:31:59] 2.13.1.0 2445429 3737 93072 148797 3 188 34731844 40960000 13677 16776704 0 59889898 99.999 133305 60291 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 22:31:59] CVMFS is ok
[2025-07-26 22:31:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 22:31:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 22:31:59] Further information can be found at the LHC@home message board.
[2025-07-26 22:31:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 22:31:59] Checking for apptainer binary...
[2025-07-26 22:31:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 22:31:59] Running /usr/bin/apptainer --version
[2025-07-26 22:31:59] apptainer version 1.4.1-1.el9
[2025-07-26 22:31:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 22:31:59] c-208-40.aglt2.org
[2025-07-26 22:31:59] apptainer works
[2025-07-26 22:31:59] Set ATHENA_PROC_NUMBER=8
[2025-07-26 22:31:59] Set ATHENA_CORE_NUMBER=8
[2025-07-26 22:31:59] Starting ATLAS job with PandaID=6745736064
[2025-07-26 22:31:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:28:47]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:28:47] 2025-07-27 03:28:07,188 | INFO     | summary of transferred files:
[2025-07-26 23:28:47] 2025-07-27 03:28:07,188 | INFO     |  -- lfn=log.45743349._044659.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 23:28:47] 2025-07-27 03:28:07,188 | INFO     | stage-out finished correctly
[2025-07-26 23:28:47] 2025-07-27 03:28:07,444 | WARNING  | process 288065 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 23:28:47] 2025-07-27 03:28:07,444 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6745736064/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:28:47] 2025-07-27 03:28:07,446 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3176302 B
[2025-07-26 23:28:47] 2025-07-27 03:28:07,446 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15299 B
[2025-07-26 23:28:47] 2025-07-27 03:28:07,446 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-07-26 23:28:47] 2025-07-27 03:28:07,466 | INFO     | sufficient remaining disk space (166050398208 B)
[2025-07-26 23:28:47] 2025-07-27 03:28:07,466 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 23:28:47] 2025-07-27 03:28:07,467 | INFO     | size of work directory /tmp/boinchome/slots/14/PanDA_Pilot-6745736064: 3465694 B (within 2537553920 B limit)
[2025-07-26 23:28:47] 2025-07-27 03:28:07,467 | INFO     | pfn file=/tmp/boinchome/slots/14/PanDA_Pilot-6745736064/HITS.45743349._044659.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 23:28:47] 2025-07-27 03:28:07,467 | INFO     | total size of present files: 0 B (workdir size: 3465694 B)
[2025-07-26 23:28:47] 2025-07-27 03:28:07,467 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/14/PanDA_Pilot-6745736064/HITS.45743349._044659.pool.root.1 since it does not exist
[2025-07-26 23:28:47] 2025-07-27 03:28:07,826 | INFO     | number of running child processes to parent process 288065: 1
[2025-07-26 23:28:47] 2025-07-27 03:28:07,826 | INFO     | maximum number of monitored processes: 6
[2025-07-26 23:28:47] 2025-07-27 03:28:10,331 | INFO     | monitor loop #247: job 0:6745736064 is in state 'finished'
[2025-07-26 23:28:47] 2025-07-27 03:28:10,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:28:47] 2025-07-27 03:28:10,481 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 23:28:47] 2025-07-27 03:28:10,644 | INFO     | PID=281650 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 23:28:47] 2025-07-27 03:28:10,645 | INFO     | .. there are 16 such processes running
[2025-07-26 23:28:47] 2025-07-27 03:28:11,912 | INFO     | job 6745736064 has state=finished
[2025-07-26 23:28:47] 2025-07-27 03:28:11,912 | INFO     | preparing for final server update for job 6745736064 in state='finished'
[2025-07-26 23:28:47] 2025-07-27 03:28:11,913 | INFO     | this job has now completed (state=finished)
[2025-07-26 23:28:47] 2025-07-27 03:28:11,913 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 23:28:47] 2025-07-27 03:28:11,913 | INFO     | log transfer has been attempted: DONE
[2025-07-26 23:28:47] 2025-07-27 03:28:11,913 | INFO     | job 6745736064 has finished - writing final server update
[2025-07-26 23:28:47] 2025-07-27 03:28:11,913 | INFO     | total number of processed events: 400 (read)
[2025-07-26 23:28:47] 2025-07-27 03:28:11,914 | INFO     | executing command: lscpu
[2025-07-26 23:28:47] 2025-07-27 03:28:11,972 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 23:28:47] 2025-07-27 03:28:12,837 | INFO     | monitor loop #248: job 0:6745736064 is in state 'finished'
[2025-07-26 23:28:47] 2025-07-27 03:28:12,837 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:28:47] 2025-07-27 03:28:15,340 | INFO     | monitor loop #249: job 0:6745736064 is in state 'finished'
[2025-07-26 23:28:47] 2025-07-27 03:28:15,340 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:28:47] 2025-07-27 03:28:15,476 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 23:28:47] 2025-07-27 03:28:15,481 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3791.0195546875
[2025-07-26 23:28:47] 2025-07-27 03:28:15,494 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6745736064/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:28:47] 2025-07-27 03:28:15,495 | INFO     | extracted standard info from prmon json
[2025-07-26 23:28:47] 2025-07-27 03:28:15,495 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 23:28:47] 2025-07-27 03:28:15,495 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 23:28:47] 2025-07-27 03:28:15,496 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:28:47] 2025-07-27 03:28:15,496 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:28:47] 2025-07-27 03:28:15,497 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | sum of square deviations: 34277852.0
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | sum of deviations: -451976022.99999994
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | mean x: 1753585290.5
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | mean y: 2543758.9166666665
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | -- intersect: 23124719138.852657
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | intersect: 23124719138.852657
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | chi2: 0.000938941918635454
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | -- intersect: 23124719138.852657
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | current memory leak: -13.19 B/s (using 48 data points, chi2=0.00)
[2025-07-26 23:28:47] 2025-07-27 03:28:15,498 | INFO     | could have reported an average CPU frequency of 3760 MHz (5 samples)
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | ..............................
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | . Timing measurements:
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | . get job = 0 s
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | . initial setup = 2 s
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | . payload setup = 5 s
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | . stage-in = 0 s
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | . payload execution = 3335 s
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | . stage-out = 0 s
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | . log creation = 0 s
[2025-07-26 23:28:47] 2025-07-27 03:28:15,499 | INFO     | ..............................
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | 
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | job summary report
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | --------------------------------------------------
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | PanDA job id: 6745736064
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | task id: 45743349
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | errors: (none)
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | pilot state: finished 
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | transexitcode: 0
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | exeerrorcode: 0
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | exeerrordiag: 
[2025-07-26 23:28:47] 2025-07-27 03:28:15,560 | INFO     | exitcode: 0
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | exitmsg: OK
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | cpuconsumptiontime: 24893 s
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | nevents: 400
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | neventsw: 0
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | pid: 288065
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | pgrp: 288065
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | corecount: 8
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | event service: False
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | sizes: {0: 2397476, 4: 2397738, 11: 2397766, 3345: 2432318, 3349: 2432442, 3354: 2432668}
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | --------------------------------------------------
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | 
[2025-07-26 23:28:47] 2025-07-27 03:28:15,561 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,583 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,583 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,583 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,583 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:28:47] 2025-07-27 03:28:15,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:28:47] 2025-07-27 03:28:15,583 | INFO     | job 6745736064 has completed (purged errors)
[2025-07-26 23:28:47] 2025-07-27 03:28:15,583 | INFO     | overall cleanup function is called
[2025-07-26 23:28:47] 2025-07-27 03:28:16,587 | INFO     | --- collectZombieJob: --- 10, [288065]
[2025-07-26 23:28:47] 2025-07-27 03:28:16,588 | INFO     | zombie collector waiting for pid 288065
[2025-07-26 23:28:47] 2025-07-27 03:28:16,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:28:47] 2025-07-27 03:28:16,588 | INFO     | collected zombie processes
[2025-07-26 23:28:47] 2025-07-27 03:28:16,588 | INFO     | will attempt to kill all subprocesses of pid=288065
[2025-07-26 23:28:47] 2025-07-27 03:28:16,939 | INFO     | process IDs to be killed: [288065] (in reverse order)
[2025-07-26 23:28:47] 2025-07-27 03:28:17,061 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:28:47] 2025-07-27 03:28:17,061 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:28:47] 2025-07-27 03:28:17,077 | INFO     | did not find any defunct processes belonging to 288065
[2025-07-26 23:28:47] 2025-07-27 03:28:17,089 | INFO     | did not find any defunct processes belonging to 288065
[2025-07-26 23:28:47] 2025-07-27 03:28:17,089 | INFO     | ready for new job
[2025-07-26 23:28:47] 2025-07-27 03:28:17,089 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:28:47] 2025-07-27 03:28:17,090 | INFO     | ***************************************
[2025-07-26 23:28:47] 2025-07-27 03:28:17,090 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:28:47] 2025-07-27 03:28:17,090 | INFO     | ***************************************
[2025-07-26 23:28:47] 2025-07-27 03:28:17,090 | INFO     | 
[2025-07-26 23:28:47] 2025-07-27 03:28:17,095 | INFO     | architecture information:
[2025-07-26 23:28:47] 2025-07-27 03:28:17,096 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:28:47] 2025-07-27 03:28:17,108 | INFO     | cat /etc/os-release:
[2025-07-26 23:28:47] NAME="CentOS Linux"
[2025-07-26 23:28:47] VERSION="7 (Core)"
[2025-07-26 23:28:47] ID="centos"
[2025-07-26 23:28:47] ID_LIKE="rhel fedora"
[2025-07-26 23:28:47] VERSION_ID="7"
[2025-07-26 23:28:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:28:47] ANSI_COLOR="0;31"
[2025-07-26 23:28:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:28:47] HOME_URL="https://www.centos.org/"
[2025-07-26 23:28:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:28:47] 
[2025-07-26 23:28:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:28:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:28:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:28:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:28:47] 
[2025-07-26 23:28:47] 2025-07-27 03:28:17,108 | INFO     | ***************************************
[2025-07-26 23:28:47] 2025-07-27 03:28:17,611 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-07-26 23:28:47] 2025-07-27 03:28:17,627 | INFO     | sufficient remaining disk space (166050398208 B)
[2025-07-26 23:28:47] 2025-07-27 03:28:17,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:28:47] 2025-07-27 03:28:17,627 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:28:47] 2025-07-27 03:28:17,627 | INFO     | update_server=False
[2025-07-26 23:28:47] 2025-07-27 03:28:17,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:28:47] 2025-07-27 03:28:17,675 | INFO     | all data control threads have been joined
[2025-07-26 23:28:47] 2025-07-27 03:28:17,762 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:28:47] 2025-07-27 03:28:17,843 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 23:28:47] 2025-07-27 03:28:17,843 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 23:28:47] 2025-07-27 03:28:17,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:28:47] 2025-07-27 03:28:17,843 | INFO     | will abort loop
[2025-07-26 23:28:47] 2025-07-27 03:28:18,309 | INFO     | all job control threads have been joined
[2025-07-26 23:28:47] 2025-07-27 03:28:18,633 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:18,680 | INFO     | [data] control thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:18,777 | INFO     | [job] validate thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:18,843 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:18,848 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:18,911 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:19,074 | INFO     | all payload control threads have been joined
[2025-07-26 23:28:47] 2025-07-27 03:28:19,113 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:19,315 | INFO     | [job] control thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:19,531 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:19,574 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:19,767 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:19,861 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:20,079 | INFO     | [payload] control thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:20,570 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:28:47] 2025-07-27 03:28:21,052 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:28:47] 2025-07-27 03:28:21,576 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:25,059 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:28,582 | INFO     | job.realtimelogging is not enabled
[2025-07-26 23:28:47] 2025-07-27 03:28:29,587 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:28:47] 2025-07-27 03:28:30,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140036887807808)>', '<ExcThread(monitor, started 140036251047680)>']
[2025-07-26 23:28:47] 2025-07-27 03:28:35,782 | INFO     | all workflow threads have been joined
[2025-07-26 23:28:47] 2025-07-27 03:28:35,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:28:47] 2025-07-27 03:28:35,782 | INFO     | traces error code: 0
[2025-07-26 23:28:47] 2025-07-27 03:28:35,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:28:47] 2025-07-27 03:28:47,164 | INFO     | PID=281650 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 23:28:47] 2025-07-27 03:28:47,164 | INFO     | .. there are 16 such processes running
[2025-07-26 23:28:47] 2025-07-27 03:28:47,165 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:28:47] 2025-07-27 03:28:47,165 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:28:47] 2025-07-27 03:28:47,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:28:47] 2025-07-27 03:28:47,165 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:28:47] 2025-07-27 03:28:47,165 | INFO     | [monitor] control thread has ended
[2025-07-26 23:28:47] 2025-07-27 03:28:47,262 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:28:47] 2025-07-27 03:28:47,264 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:28:47] 2025-07-27 03:28:47,267 [wrapper] pilotpid: 281650
[2025-07-26 23:28:47] 2025-07-27 03:28:47,269 [wrapper] Pilot exit status: 0
[2025-07-26 23:28:47] 2025-07-27 03:28:47,278 [wrapper] pandaids: 6745736064
[2025-07-26 23:28:47] 2025-07-27 03:28:47,361 [wrapper] cleanup supervisor_pilot  576818 281651
[2025-07-26 23:28:47] 2025-07-27 03:28:47,364 [wrapper] Test setup, not cleaning
[2025-07-26 23:28:47] 2025-07-27 03:28:47,367 [wrapper] apfmon messages muted
[2025-07-26 23:28:47] 2025-07-27 03:28:47,369 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:28:47] 2025-07-27 03:28:47,371 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:28:47]  *** Error codes and diagnostics ***
[2025-07-26 23:28:47]     "exeErrorCode": 0,
[2025-07-26 23:28:47]     "exeErrorDiag": "",
[2025-07-26 23:28:47]     "pilotErrorCode": 0,
[2025-07-26 23:28:47]     "pilotErrorDiag": "",
[2025-07-26 23:28:47]  *** Listing of results directory ***
[2025-07-26 23:28:47] total 391576
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 17:23 pilot3.tar.gz
[2025-07-26 23:28:47] -rwx------. 1 boincer umatlas     36292 Jul 26 17:24 runpilot2-wrapper.sh
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 17:24 queuedata.json
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas       100 Jul 26 22:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:28:47] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 22:31 run_atlas
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas       105 Jul 26 22:31 job.xml
[2025-07-26 23:28:47] -rw-r--r--. 2 boincer umatlas 189776288 Jul 26 22:31 EVNT.45743347._002556.pool.root.1
[2025-07-26 23:28:47] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:31 start_atlas.sh
[2025-07-26 23:28:47] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 22:31 shared
[2025-07-26 23:28:47] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 22:31 input.tar.gz
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas         0 Jul 26 22:31 boinc_lockfile
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 22:31 pandaJob.out
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas    980117 Jul 26 22:32 agis_schedconf.cvmfs.json
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas   1593052 Jul 26 22:32 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:28:47] drwx------. 4 boincer umatlas      4096 Jul 26 22:32 pilot3
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas      7173 Jul 26 23:19 init_data.xml
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas 206048638 Jul 26 23:27 HITS.45743349._044659.pool.root.1
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas       529 Jul 26 23:27 boinc_task_state.xml
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas      1028 Jul 26 23:28 memory_monitor_summary.json
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas    287551 Jul 26 23:28 log.45743349._044659.job.log.tgz.1
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas      7766 Jul 26 23:28 heartbeat.json
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 23:28 boinc_mmap_file
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas        27 Jul 26 23:28 wrapper_checkpoint.txt
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas        95 Jul 26 23:28 pilot_heartbeat.json
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas       822 Jul 26 23:28 pilotlog.txt
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas    346286 Jul 26 23:28 log.45743349._044659.job.log.1
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas       357 Jul 26 23:28 output.list
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas       620 Jul 26 23:28 runtime_log
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas    655360 Jul 26 23:28 result.tar.gz
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas      8674 Jul 26 23:28 runtime_log.err
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas       651 Jul 26 23:28 GrOMDmBZ1z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmXT1KDmGi2Imn.diag
[2025-07-26 23:28:47] -rw-r--r--. 1 boincer umatlas     22413 Jul 26 23:28 stderr.txt
[2025-07-26 23:28:47] HITS file was successfully produced:
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas 206048638 Jul 26 23:27 shared/HITS.pool.root.1
[2025-07-26 23:28:47]  *** Contents of shared directory: ***
[2025-07-26 23:28:47] total 387748
[2025-07-26 23:28:47] -rw-r--r--. 2 boincer umatlas 189776288 Jul 26 22:31 ATLAS.root_0
[2025-07-26 23:28:47] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:31 start_atlas.sh
[2025-07-26 23:28:47] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 22:31 input.tar.gz
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas 206048638 Jul 26 23:27 HITS.pool.root.1
[2025-07-26 23:28:47] -rw-------. 1 boincer umatlas    655360 Jul 26 23:28 result.tar.gz
23:28:49 (278039): run_atlas exited; CPU time 24964.463786
23:28:49 (278039): called boinc_finish(0)

</stderr_txt>
]]>

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