Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:25:23 (19660): wrapper (7.7.26015): starting
22:25:23 (19660): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 22:25:23] Arguments: --nthreads 12
[2025-07-26 22:25:23] Threads: 12
[2025-07-26 22:25:23] Checking for CVMFS
[2025-07-26 22:25:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 22:25:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 22:25:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 22:25:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 22:25:23] 2.11.2.0 3081 111352 101404 148797 1 56 14649160 20275201 1 130560 0 37595178 99.969 9611140 10508 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 22:25:23] CVMFS is ok
[2025-07-26 22:25:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 22:25:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 22:25:23] Further information can be found at the LHC@home message board.
[2025-07-26 22:25:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 22:25:23] Checking for apptainer binary...
[2025-07-26 22:25:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 22:25:23] Running /usr/bin/apptainer --version
[2025-07-26 22:25:23] apptainer version 1.3.2-1.el7
[2025-07-26 22:25:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 22:25:25] c-205-29.aglt2.org
[2025-07-26 22:25:25] apptainer works
[2025-07-26 22:25:25] Set ATHENA_PROC_NUMBER=12
[2025-07-26 22:25:25] Set ATHENA_CORE_NUMBER=12
[2025-07-26 22:25:25] Starting ATLAS job with PandaID=6745775483
[2025-07-26 22:25:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:47:11]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:47:11]  is_altstaged=None
[2025-07-26 23:47:11]  is_tar=False
[2025-07-26 23:47:11]  lfn=log.45743349._044850.job.log.tgz.1
[2025-07-26 23:47:11]  mtime=0
[2025-07-26 23:47:11]  protocol_id=None
[2025-07-26 23:47:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 23:47:11]  replicas=None
[2025-07-26 23:47:11]  scope=mc23_13p6TeV
[2025-07-26 23:47:11]  status=None
[2025-07-26 23:47:11]  status_code=0
[2025-07-26 23:47:11]  storage_token=
[2025-07-26 23:47:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745775483/log.45743349._044850.job.log.tgz.1
[2025-07-26 23:47:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dc/7d/log.45743349._044850.job.log.tgz.1
[2025-07-26 23:47:11]  workdir=None
[2025-07-26 23:47:11] ]
[2025-07-26 23:47:11] 2025-07-27 03:46:33,886 | INFO     | transferring file log.45743349._044850.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745775483/log.45743349._044850.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 23:47:11] 2025-07-27 03:46:33,886 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745775483/log.45743349._044850.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._044850.job
[2025-07-26 23:47:11] 2025-07-27 03:46:33,910 | INFO     | adding to output.list: log.45743349._044850.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dc/7d/log.45743349._044850.job.log.tg
[2025-07-26 23:47:11] 2025-07-27 03:46:33,911 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 23:47:11] 2025-07-27 03:46:33,911 | INFO     | summary of transferred files:
[2025-07-26 23:47:11] 2025-07-27 03:46:33,911 | INFO     |  -- lfn=log.45743349._044850.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 23:47:11] 2025-07-27 03:46:33,911 | INFO     | stage-out finished correctly
[2025-07-26 23:47:11] 2025-07-27 03:46:33,997 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 23:47:11] 2025-07-27 03:46:34,168 | INFO     | monitor loop #362: job 0:6745775483 is in state 'finished'
[2025-07-26 23:47:11] 2025-07-27 03:46:34,168 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:47:11] 2025-07-27 03:46:34,359 | INFO     | job 6745775483 has state=finished
[2025-07-26 23:47:11] 2025-07-27 03:46:34,359 | INFO     | preparing for final server update for job 6745775483 in state='finished'
[2025-07-26 23:47:11] 2025-07-27 03:46:34,360 | INFO     | this job has now completed (state=finished)
[2025-07-26 23:47:11] 2025-07-27 03:46:34,360 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 23:47:11] 2025-07-27 03:46:34,360 | INFO     | log transfer has been attempted: DONE
[2025-07-26 23:47:11] 2025-07-27 03:46:34,361 | INFO     | job 6745775483 has finished - writing final server update
[2025-07-26 23:47:11] 2025-07-27 03:46:34,361 | INFO     | total number of processed events: 400 (read)
[2025-07-26 23:47:11] 2025-07-27 03:46:34,362 | INFO     | executing command: lscpu
[2025-07-26 23:47:11] 2025-07-27 03:46:34,388 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 23:47:11] 2025-07-27 03:46:36,672 | INFO     | monitor loop #363: job 0:6745775483 is in state 'finished'
[2025-07-26 23:47:11] 2025-07-27 03:46:36,672 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:47:11] 2025-07-27 03:46:38,898 | INFO     | PID=23254 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 23:47:11] 2025-07-27 03:46:38,994 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-26 23:47:11] 2025-07-27 03:46:38,998 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-26 23:47:11] 2025-07-27 03:46:39,000 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745775483/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:47:11] 2025-07-27 03:46:39,001 | INFO     | extracted standard info from prmon json
[2025-07-26 23:47:11] 2025-07-27 03:46:39,001 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 23:47:11] 2025-07-27 03:46:39,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 23:47:11] 2025-07-27 03:46:39,002 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:47:11] 2025-07-27 03:46:39,002 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:47:11] 2025-07-27 03:46:39,005 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:47:11] 2025-07-27 03:46:39,005 | INFO     | sum of square deviations: 120605052.0
[2025-07-26 23:47:11] 2025-07-27 03:46:39,005 | INFO     | sum of deviations: -9880236856.0
[2025-07-26 23:47:11] 2025-07-27 03:46:39,005 | INFO     | mean x: 1753585671.0
[2025-07-26 23:47:11] 2025-07-27 03:46:39,005 | INFO     | mean y: 2854967.8493150687
[2025-07-26 23:47:11] 2025-07-27 03:46:39,006 | INFO     | -- intersect: 143660533393.85495
[2025-07-26 23:47:11] 2025-07-27 03:46:39,006 | INFO     | intersect: 143660533393.85495
[2025-07-26 23:47:11] 2025-07-27 03:46:39,006 | INFO     | chi2: 0.06245628923276198
[2025-07-26 23:47:11] 2025-07-27 03:46:39,006 | INFO     | -- intersect: 143660533393.85495
[2025-07-26 23:47:11] 2025-07-27 03:46:39,006 | INFO     | current memory leak: -81.92 B/s (using 73 data points, chi2=0.06)
[2025-07-26 23:47:11] 2025-07-27 03:46:39,006 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-07-26 23:47:11] 2025-07-27 03:46:39,007 | INFO     | ..............................
[2025-07-26 23:47:11] 2025-07-27 03:46:39,007 | INFO     | . Timing measurements:
[2025-07-26 23:47:11] 2025-07-27 03:46:39,007 | INFO     | . get job = 0 s
[2025-07-26 23:47:11] 2025-07-27 03:46:39,007 | INFO     | . initial setup = 2 s
[2025-07-26 23:47:11] 2025-07-27 03:46:39,007 | INFO     | . payload setup = 9 s
[2025-07-26 23:47:11] 2025-07-27 03:46:39,007 | INFO     | . stage-in = 0 s
[2025-07-26 23:47:11] 2025-07-27 03:46:39,007 | INFO     | . payload execution = 4824 s
[2025-07-26 23:47:11] 2025-07-27 03:46:39,007 | INFO     | . stage-out = 0 s
[2025-07-26 23:47:11] 2025-07-27 03:46:39,007 | INFO     | . log creation = 0 s
[2025-07-26 23:47:11] 2025-07-27 03:46:39,008 | INFO     | ..............................
[2025-07-26 23:47:11] 2025-07-27 03:46:39,092 | INFO     | 
[2025-07-26 23:47:11] 2025-07-27 03:46:39,092 | INFO     | job summary report
[2025-07-26 23:47:11] 2025-07-27 03:46:39,092 | INFO     | --------------------------------------------------
[2025-07-26 23:47:11] 2025-07-27 03:46:39,093 | INFO     | PanDA job id: 6745775483
[2025-07-26 23:47:11] 2025-07-27 03:46:39,093 | INFO     | task id: 45743349
[2025-07-26 23:47:11] 2025-07-27 03:46:39,093 | INFO     | errors: (none)
[2025-07-26 23:47:11] 2025-07-27 03:46:39,093 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:47:11] 2025-07-27 03:46:39,093 | INFO     | pilot state: finished 
[2025-07-26 23:47:11] 2025-07-27 03:46:39,093 | INFO     | transexitcode: 0
[2025-07-26 23:47:11] 2025-07-27 03:46:39,093 | INFO     | exeerrorcode: 0
[2025-07-26 23:47:11] 2025-07-27 03:46:39,094 | INFO     | exeerrordiag: 
[2025-07-26 23:47:11] 2025-07-27 03:46:39,094 | INFO     | exitcode: 0
[2025-07-26 23:47:11] 2025-07-27 03:46:39,094 | INFO     | exitmsg: OK
[2025-07-26 23:47:11] 2025-07-27 03:46:39,094 | INFO     | cpuconsumptiontime: 52927 s
[2025-07-26 23:47:11] 2025-07-27 03:46:39,094 | INFO     | nevents: 400
[2025-07-26 23:47:11] 2025-07-27 03:46:39,094 | INFO     | neventsw: 0
[2025-07-26 23:47:11] 2025-07-27 03:46:39,095 | INFO     | pid: 29750
[2025-07-26 23:47:11] 2025-07-27 03:46:39,095 | INFO     | pgrp: 29750
[2025-07-26 23:47:11] 2025-07-27 03:46:39,095 | INFO     | corecount: 12
[2025-07-26 23:47:11] 2025-07-27 03:46:39,095 | INFO     | event service: False
[2025-07-26 23:47:11] 2025-07-27 03:46:39,095 | INFO     | sizes: {0: 2397298, 1: 2397497, 5: 2397759, 11: 2397815, 4838: 2424059, 4839: 2433240, 4844: 2433378}
[2025-07-26 23:47:11] 2025-07-27 03:46:39,095 | INFO     | --------------------------------------------------
[2025-07-26 23:47:11] 2025-07-27 03:46:39,095 | INFO     | 
[2025-07-26 23:47:11] 2025-07-27 03:46:39,096 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 23:47:11] 2025-07-27 03:46:39,119 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,120 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,120 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,120 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,120 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,120 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,120 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,121 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,121 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,121 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,121 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,121 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,122 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,122 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,122 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,122 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,122 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,122 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:47:11] 2025-07-27 03:46:39,123 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,123 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:47:11] 2025-07-27 03:46:39,123 | INFO     | job 6745775483 has completed (purged errors)
[2025-07-26 23:47:11] 2025-07-27 03:46:39,123 | INFO     | overall cleanup function is called
[2025-07-26 23:47:11] 2025-07-27 03:46:40,130 | INFO     | --- collectZombieJob: --- 10, [29750]
[2025-07-26 23:47:11] 2025-07-27 03:46:40,130 | INFO     | zombie collector waiting for pid 29750
[2025-07-26 23:47:11] 2025-07-27 03:46:40,131 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:47:11] 2025-07-27 03:46:40,131 | INFO     | collected zombie processes
[2025-07-26 23:47:11] 2025-07-27 03:46:40,131 | INFO     | will attempt to kill all subprocesses of pid=29750
[2025-07-26 23:47:11] 2025-07-27 03:46:40,226 | INFO     | process IDs to be killed: [29750] (in reverse order)
[2025-07-26 23:47:11] 2025-07-27 03:46:40,279 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:47:11] 2025-07-27 03:46:40,279 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:47:11] 2025-07-27 03:46:40,283 | INFO     | did not find any defunct processes belonging to 29750
[2025-07-26 23:47:11] 2025-07-27 03:46:40,286 | INFO     | did not find any defunct processes belonging to 29750
[2025-07-26 23:47:11] 2025-07-27 03:46:40,286 | INFO     | ready for new job
[2025-07-26 23:47:11] 2025-07-27 03:46:40,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:47:11] 2025-07-27 03:46:40,288 | INFO     | ***************************************
[2025-07-26 23:47:11] 2025-07-27 03:46:40,288 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:47:11] 2025-07-27 03:46:40,288 | INFO     | ***************************************
[2025-07-26 23:47:11] 2025-07-27 03:46:40,288 | INFO     | 
[2025-07-26 23:47:11] 2025-07-27 03:46:40,289 | INFO     | architecture information:
[2025-07-26 23:47:11] 2025-07-27 03:46:40,289 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:47:11] 2025-07-27 03:46:40,303 | INFO     | cat /etc/os-release:
[2025-07-26 23:47:11] NAME="CentOS Linux"
[2025-07-26 23:47:11] VERSION="7 (Core)"
[2025-07-26 23:47:11] ID="centos"
[2025-07-26 23:47:11] ID_LIKE="rhel fedora"
[2025-07-26 23:47:11] VERSION_ID="7"
[2025-07-26 23:47:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:47:11] ANSI_COLOR="0;31"
[2025-07-26 23:47:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:47:11] HOME_URL="https://www.centos.org/"
[2025-07-26 23:47:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:47:11] 
[2025-07-26 23:47:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:47:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:47:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:47:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:47:11] 
[2025-07-26 23:47:11] 2025-07-27 03:46:40,304 | INFO     | ***************************************
[2025-07-26 23:47:11] 2025-07-27 03:46:40,806 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 23:47:11] 2025-07-27 03:46:40,823 | INFO     | sufficient remaining disk space (29520560128 B)
[2025-07-26 23:47:11] 2025-07-27 03:46:40,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:47:11] 2025-07-27 03:46:40,824 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:47:11] 2025-07-27 03:46:40,824 | INFO     | update_server=False
[2025-07-26 23:47:11] 2025-07-27 03:46:40,824 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:47:11] 2025-07-27 03:46:40,825 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:47:11] 2025-07-27 03:46:40,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:47:11] 2025-07-27 03:46:40,825 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:47:11] 2025-07-27 03:46:40,825 | INFO     | aborting loop
[2025-07-26 23:47:11] 2025-07-27 03:46:41,560 | INFO     | all payload control threads have been joined
[2025-07-26 23:47:11] 2025-07-27 03:46:41,659 | INFO     | all data control threads have been joined
[2025-07-26 23:47:11] 2025-07-27 03:46:41,829 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:41,830 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:41,831 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:42,007 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:47:11] 2025-07-27 03:46:42,081 | INFO     | all job control threads have been joined
[2025-07-26 23:47:11] 2025-07-27 03:46:42,115 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:42,147 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:42,426 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:42,546 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:42,565 | INFO     | [payload] control thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:42,664 | INFO     | [data] control thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:43,044 | INFO     | [job] validate thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:43,087 | INFO     | [job] control thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:43,159 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:43,239 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:44,013 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:44,830 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:51,631 | INFO     | job.realtimelogging is not enabled
[2025-07-26 23:47:11] 2025-07-27 03:46:52,636 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:47:11] 2025-07-27 03:46:52,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543454598976)>', '<ExcThread(monitor, started 140542788753152)>']
[2025-07-26 23:47:11] 2025-07-27 03:46:57,996 | INFO     | all workflow threads have been joined
[2025-07-26 23:47:11] 2025-07-27 03:46:57,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:47:11] 2025-07-27 03:46:57,997 | INFO     | traces error code: 0
[2025-07-26 23:47:11] 2025-07-27 03:46:57,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:47:11] 2025-07-27 03:47:11,094 | INFO     | PID=23254 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 23:47:11] 2025-07-27 03:47:11,095 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:47:11] 2025-07-27 03:47:11,095 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:47:11] 2025-07-27 03:47:11,095 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:47:11] 2025-07-27 03:47:11,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:47:11] 2025-07-27 03:47:11,095 | INFO     | [monitor] control thread has ended
[2025-07-26 23:47:11] 2025-07-27 03:47:11,179 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:47:11] 2025-07-27 03:47:11,183 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:47:11] 2025-07-27 03:47:11,187 [wrapper] pilotpid: 23254
[2025-07-26 23:47:11] 2025-07-27 03:47:11,190 [wrapper] Pilot exit status: 0
[2025-07-26 23:47:11] 2025-07-27 03:47:11,206 [wrapper] pandaids: 6745775483
[2025-07-26 23:47:11] 2025-07-27 03:47:11,246 [wrapper] cleanup supervisor_pilot 28184 23255
[2025-07-26 23:47:11] 2025-07-27 03:47:11,250 [wrapper] Test setup, not cleaning
[2025-07-26 23:47:11] 2025-07-27 03:47:11,254 [wrapper] apfmon messages muted
[2025-07-26 23:47:11] 2025-07-27 03:47:11,258 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:47:11] 2025-07-27 03:47:11,262 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:47:11]  *** Error codes and diagnostics ***
[2025-07-26 23:47:11]     "exeErrorCode": 0,
[2025-07-26 23:47:11]     "exeErrorDiag": "",
[2025-07-26 23:47:11]     "pilotErrorCode": 0,
[2025-07-26 23:47:11]     "pilotErrorDiag": "",
[2025-07-26 23:47:11]  *** Listing of results directory ***
[2025-07-26 23:47:11] total 348952
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 17:23 pilot3.tar.gz
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 17:27 queuedata.json
[2025-07-26 23:47:11] -rwx------ 1 boincer umatlas     36292 Jul 26 17:28 runpilot2-wrapper.sh
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas       100 Jul 26 22:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:47:11] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 22:25 run_atlas
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas       105 Jul 26 22:25 job.xml
[2025-07-26 23:47:11] -rw-r--r-- 2 boincer umatlas 143820758 Jul 26 22:25 EVNT.45743347._002566.pool.root.1
[2025-07-26 23:47:11] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 22:25 start_atlas.sh
[2025-07-26 23:47:11] drwxrwx--x 2 boincer umatlas      4096 Jul 26 22:25 shared
[2025-07-26 23:47:11] -rw-r--r-- 2 boincer umatlas    542882 Jul 26 22:25 input.tar.gz
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas         0 Jul 26 22:25 boinc_lockfile
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas      2560 Jul 26 22:25 pandaJob.out
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas    980117 Jul 26 22:25 agis_schedconf.cvmfs.json
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas   1593052 Jul 26 22:25 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:47:11] drwx------ 4 boincer umatlas      4096 Jul 26 22:25 pilot3
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas      5868 Jul 26 23:38 init_data.xml
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas 208004463 Jul 26 23:46 HITS.45743349._044850.pool.root.1
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas       529 Jul 26 23:46 boinc_task_state.xml
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas      1047 Jul 26 23:46 memory_monitor_summary.json
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas    351119 Jul 26 23:46 log.45743349._044850.job.log.tgz.1
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas      7852 Jul 26 23:46 heartbeat.json
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 23:46 boinc_mmap_file
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas        27 Jul 26 23:46 wrapper_checkpoint.txt
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas        95 Jul 26 23:47 pilot_heartbeat.json
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas       745 Jul 26 23:47 pilotlog.txt
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas    463543 Jul 26 23:47 log.45743349._044850.job.log.1
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas       357 Jul 26 23:47 output.list
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas       620 Jul 26 23:47 runtime_log
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas    829440 Jul 26 23:47 result.tar.gz
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas       659 Jul 26 23:47 xTsKDmGc1z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCCTLDmTq09lm.diag
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas      8662 Jul 26 23:47 runtime_log.err
[2025-07-26 23:47:11] -rw-r--r-- 1 boincer umatlas     21567 Jul 26 23:47 stderr.txt
[2025-07-26 23:47:11] HITS file was successfully produced:
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas 208004463 Jul 26 23:46 shared/HITS.pool.root.1
[2025-07-26 23:47:11]  *** Contents of shared directory: ***
[2025-07-26 23:47:11] total 344948
[2025-07-26 23:47:11] -rw-r--r-- 2 boincer umatlas 143820758 Jul 26 22:25 ATLAS.root_0
[2025-07-26 23:47:11] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 22:25 start_atlas.sh
[2025-07-26 23:47:11] -rw-r--r-- 2 boincer umatlas    542882 Jul 26 22:25 input.tar.gz
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas 208004463 Jul 26 23:46 HITS.pool.root.1
[2025-07-26 23:47:11] -rw------- 1 boincer umatlas    829440 Jul 26 23:47 result.tar.gz
23:47:13 (19660): run_atlas exited; CPU time 52903.300929
23:47:13 (19660): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN