Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:49:26 (3788632): wrapper (7.7.26015): starting
23:49:26 (3788632): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 23:49:26] Arguments: --nthreads 12
[2025-07-26 23:49:26] Threads: 12
[2025-07-26 23:49:26] Checking for CVMFS
[2025-07-26 23:49:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 23:49:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 23:49:26] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 23:49:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 23:49:27] 2.12.6.0 1267368 17842 333104 148799 3 335 19136730 32935937 11120 16776704 0 33414257 99.696 64344977 29458 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 23:49:27] CVMFS is ok
[2025-07-26 23:49:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 23:49:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 23:49:27] Further information can be found at the LHC@home message board.
[2025-07-26 23:49:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 23:49:27] Checking for apptainer binary...
[2025-07-26 23:49:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 23:49:27] Running /usr/bin/apptainer --version
[2025-07-26 23:49:27] apptainer version 1.4.1-1.el9
[2025-07-26 23:49:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 23:49:27] c6-2-29-3.aglt2.org
[2025-07-26 23:49:27] apptainer works
[2025-07-26 23:49:27] Set ATHENA_PROC_NUMBER=12
[2025-07-26 23:49:27] Set ATHENA_CORE_NUMBER=12
[2025-07-26 23:49:27] Starting ATLAS job with PandaID=6745503332
[2025-07-26 23:49:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 01:04:40]  *** The last 200 lines of the pilot log: ***
[2025-07-27 01:04:40]  lfn=log.45743349._044136.job.log.tgz.1
[2025-07-27 01:04:40]  mtime=0
[2025-07-27 01:04:40]  protocol_id=None
[2025-07-27 01:04:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 01:04:40]  replicas=None
[2025-07-27 01:04:40]  scope=mc23_13p6TeV
[2025-07-27 01:04:40]  status=None
[2025-07-27 01:04:40]  status_code=0
[2025-07-27 01:04:40]  storage_token=
[2025-07-27 01:04:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745503332/log.45743349._044136.job.log.tgz.1
[2025-07-27 01:04:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/7d/log.45743349._044136.job.log.tgz.1
[2025-07-27 01:04:40]  workdir=None
[2025-07-27 01:04:40] ]
[2025-07-27 01:04:40] 2025-07-27 05:04:00,944 | INFO     | transferring file log.45743349._044136.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745503332/log.45743349._044136.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 01:04:40] 2025-07-27 05:04:00,945 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745503332/log.45743349._044136.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._044136.job
[2025-07-27 01:04:40] 2025-07-27 05:04:00,965 | INFO     | adding to output.list: log.45743349._044136.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/7d/log.45743349._044136.job.log.tg
[2025-07-27 01:04:40] 2025-07-27 05:04:00,966 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 01:04:40] 2025-07-27 05:04:00,967 | INFO     | summary of transferred files:
[2025-07-27 01:04:40] 2025-07-27 05:04:00,967 | INFO     |  -- lfn=log.45743349._044136.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 01:04:40] 2025-07-27 05:04:00,967 | INFO     | stage-out finished correctly
[2025-07-27 01:04:40] 2025-07-27 05:04:01,747 | INFO     | monitor loop #329: job 0:6745503332 is in state 'finished'
[2025-07-27 01:04:40] 2025-07-27 05:04:01,747 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 01:04:40] 2025-07-27 05:04:02,373 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 01:04:40] 2025-07-27 05:04:02,778 | INFO     | job 6745503332 has state=finished
[2025-07-27 01:04:40] 2025-07-27 05:04:02,778 | INFO     | preparing for final server update for job 6745503332 in state='finished'
[2025-07-27 01:04:40] 2025-07-27 05:04:02,779 | INFO     | this job has now completed (state=finished)
[2025-07-27 01:04:40] 2025-07-27 05:04:02,779 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 01:04:40] 2025-07-27 05:04:02,779 | INFO     | log transfer has been attempted: DONE
[2025-07-27 01:04:40] 2025-07-27 05:04:02,779 | INFO     | job 6745503332 has finished - writing final server update
[2025-07-27 01:04:40] 2025-07-27 05:04:02,780 | INFO     | total number of processed events: 400 (read)
[2025-07-27 01:04:40] 2025-07-27 05:04:02,780 | INFO     | executing command: lscpu
[2025-07-27 01:04:40] 2025-07-27 05:04:02,846 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 01:04:40] 2025-07-27 05:04:04,250 | INFO     | monitor loop #330: job 0:6745503332 is in state 'finished'
[2025-07-27 01:04:40] 2025-07-27 05:04:04,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 01:04:40] 2025-07-27 05:04:06,753 | INFO     | monitor loop #331: job 0:6745503332 is in state 'finished'
[2025-07-27 01:04:40] 2025-07-27 05:04:06,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 01:04:40] 2025-07-27 05:04:07,780 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 01:04:40] 2025-07-27 05:04:07,783 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2537.5724821428566
[2025-07-27 01:04:40] 2025-07-27 05:04:07,792 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745503332/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 01:04:40] 2025-07-27 05:04:07,793 | INFO     | extracted standard info from prmon json
[2025-07-27 01:04:40] 2025-07-27 05:04:07,794 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 01:04:40] 2025-07-27 05:04:07,794 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 01:04:40] 2025-07-27 05:04:07,794 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 01:04:40] 2025-07-27 05:04:07,794 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 01:04:40] 2025-07-27 05:04:07,796 | INFO     | fitting pss+swap vs Time
[2025-07-27 01:04:40] 2025-07-27 05:04:07,796 | INFO     | sum of square deviations: 89127252.5
[2025-07-27 01:04:40] 2025-07-27 05:04:07,797 | INFO     | sum of deviations: -8093537828.0
[2025-07-27 01:04:40] 2025-07-27 05:04:07,797 | INFO     | mean x: 1753590500.5
[2025-07-27 01:04:40] 2025-07-27 05:04:07,797 | INFO     | mean y: 2523645.6363636362
[2025-07-27 01:04:40] 2025-07-27 05:04:07,797 | INFO     | -- intersect: 159243952641.9829
[2025-07-27 01:04:40] 2025-07-27 05:04:07,797 | INFO     | intersect: 159243952641.9829
[2025-07-27 01:04:40] 2025-07-27 05:04:07,797 | INFO     | chi2: 0.2243641247496985
[2025-07-27 01:04:40] 2025-07-27 05:04:07,797 | INFO     | -- intersect: 159243952641.9829
[2025-07-27 01:04:40] 2025-07-27 05:04:07,797 | INFO     | current memory leak: -90.81 B/s (using 66 data points, chi2=0.22)
[2025-07-27 01:04:40] 2025-07-27 05:04:07,797 | INFO     | could have reported an average CPU frequency of 2644 MHz (6 samples)
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | ..............................
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | . Timing measurements:
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | . get job = 0 s
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | . initial setup = 3 s
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | . payload setup = 9 s
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | . stage-in = 0 s
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | . payload execution = 4428 s
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | . stage-out = 0 s
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | . log creation = 0 s
[2025-07-27 01:04:40] 2025-07-27 05:04:07,798 | INFO     | ..............................
[2025-07-27 01:04:40] 2025-07-27 05:04:08,018 | INFO     | 
[2025-07-27 01:04:40] 2025-07-27 05:04:08,018 | INFO     | job summary report
[2025-07-27 01:04:40] 2025-07-27 05:04:08,018 | INFO     | --------------------------------------------------
[2025-07-27 01:04:40] 2025-07-27 05:04:08,018 | INFO     | PanDA job id: 6745503332
[2025-07-27 01:04:40] 2025-07-27 05:04:08,018 | INFO     | task id: 45743349
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | errors: (none)
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | pilot state: finished 
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | transexitcode: 0
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | exeerrorcode: 0
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | exeerrordiag: 
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | exitcode: 0
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | exitmsg: OK
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | cpuconsumptiontime: 45364 s
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | nevents: 400
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | neventsw: 0
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | pid: 3799658
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | pgrp: 3799658
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | corecount: 12
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | event service: False
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | sizes: {0: 2397475, 6: 2397737, 11: 2397765, 4441: 2423756, 4443: 2432754, 4445: 2432810, 4450: 2433132}
[2025-07-27 01:04:40] 2025-07-27 05:04:08,019 | INFO     | --------------------------------------------------
[2025-07-27 01:04:40] 2025-07-27 05:04:08,020 | INFO     | 
[2025-07-27 01:04:40] 2025-07-27 05:04:08,020 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 01:04:40] 2025-07-27 05:04:08,039 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,040 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | job 6745503332 has completed (purged errors)
[2025-07-27 01:04:40] 2025-07-27 05:04:08,041 | INFO     | overall cleanup function is called
[2025-07-27 01:04:40] 2025-07-27 05:04:09,049 | INFO     | --- collectZombieJob: --- 10, [3799658]
[2025-07-27 01:04:40] 2025-07-27 05:04:09,049 | INFO     | zombie collector waiting for pid 3799658
[2025-07-27 01:04:40] 2025-07-27 05:04:09,049 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 01:04:40] 2025-07-27 05:04:09,049 | INFO     | collected zombie processes
[2025-07-27 01:04:40] 2025-07-27 05:04:09,049 | INFO     | will attempt to kill all subprocesses of pid=3799658
[2025-07-27 01:04:40] 2025-07-27 05:04:09,285 | INFO     | process IDs to be killed: [3799658] (in reverse order)
[2025-07-27 01:04:40] 2025-07-27 05:04:09,363 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 01:04:40] 2025-07-27 05:04:09,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 01:04:40] 2025-07-27 05:04:09,377 | INFO     | did not find any defunct processes belonging to 3799658
[2025-07-27 01:04:40] 2025-07-27 05:04:09,389 | INFO     | did not find any defunct processes belonging to 3799658
[2025-07-27 01:04:40] 2025-07-27 05:04:09,390 | INFO     | ready for new job
[2025-07-27 01:04:40] 2025-07-27 05:04:09,390 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 01:04:40] 2025-07-27 05:04:09,391 | INFO     | ***************************************
[2025-07-27 01:04:40] 2025-07-27 05:04:09,392 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 01:04:40] 2025-07-27 05:04:09,392 | INFO     | ***************************************
[2025-07-27 01:04:40] 2025-07-27 05:04:09,392 | INFO     | 
[2025-07-27 01:04:40] 2025-07-27 05:04:09,408 | INFO     | architecture information:
[2025-07-27 01:04:40] 2025-07-27 05:04:09,408 | INFO     | executing command: cat /etc/os-release
[2025-07-27 01:04:40] 2025-07-27 05:04:09,423 | INFO     | cat /etc/os-release:
[2025-07-27 01:04:40] NAME="CentOS Linux"
[2025-07-27 01:04:40] VERSION="7 (Core)"
[2025-07-27 01:04:40] ID="centos"
[2025-07-27 01:04:40] ID_LIKE="rhel fedora"
[2025-07-27 01:04:40] VERSION_ID="7"
[2025-07-27 01:04:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 01:04:40] ANSI_COLOR="0;31"
[2025-07-27 01:04:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 01:04:40] HOME_URL="https://www.centos.org/"
[2025-07-27 01:04:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 01:04:40] 
[2025-07-27 01:04:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 01:04:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 01:04:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 01:04:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 01:04:40] 
[2025-07-27 01:04:40] 2025-07-27 05:04:09,423 | INFO     | ***************************************
[2025-07-27 01:04:40] 2025-07-27 05:04:09,926 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 01:04:40] 2025-07-27 05:04:09,941 | INFO     | sufficient remaining disk space (76355207168 B)
[2025-07-27 01:04:40] 2025-07-27 05:04:09,941 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 01:04:40] 2025-07-27 05:04:09,941 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 01:04:40] 2025-07-27 05:04:09,942 | INFO     | update_server=False
[2025-07-27 01:04:40] 2025-07-27 05:04:09,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 01:04:40] 2025-07-27 05:04:09,942 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 01:04:40] 2025-07-27 05:04:10,063 | INFO     | all data control threads have been joined
[2025-07-27 01:04:40] 2025-07-27 05:04:10,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:04:40] 2025-07-27 05:04:10,263 | INFO     | aborting loop
[2025-07-27 01:04:40] 2025-07-27 05:04:10,781 | INFO     | all payload control threads have been joined
[2025-07-27 01:04:40] 2025-07-27 05:04:10,947 | INFO     | [job] retrieve thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,035 | INFO     | [job] validate thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,069 | INFO     | [data] control thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,070 | INFO     | [data] copytool_in thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,072 | INFO     | all job control threads have been joined
[2025-07-27 01:04:40] 2025-07-27 05:04:11,157 | INFO     | [payload] validate_post thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,268 | INFO     | [job] job monitor thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,289 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,545 | INFO     | [payload] failed_post thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,576 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,786 | INFO     | [payload] control thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,938 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:11,947 | INFO     | [data] copytool_out thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:12,077 | INFO     | [job] control thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:12,294 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:12,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:04:40] 2025-07-27 05:04:12,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 01:04:40] 2025-07-27 05:04:13,911 | INFO     | [job] queue monitor thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:16,965 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 01:04:40] 2025-07-27 05:04:18,003 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191590844224)>', '<ExcThread(monitor, started 140191238952704)>']
[2025-07-27 01:04:40] 2025-07-27 05:04:23,028 | INFO     | all workflow threads have been joined
[2025-07-27 01:04:40] 2025-07-27 05:04:23,028 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 01:04:40] 2025-07-27 05:04:23,029 | INFO     | traces error code: 0
[2025-07-27 01:04:40] 2025-07-27 05:04:23,029 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 01:04:40] 2025-07-27 05:04:37,272 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-07-27 01:04:40] 2025-07-27 05:04:39,894 | INFO     | PID=3793132 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 01:04:40] 2025-07-27 05:04:39,894 | INFO     | .. there are 13 such processes running
[2025-07-27 01:04:40] 2025-07-27 05:04:39,896 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 01:04:40] 2025-07-27 05:04:39,896 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 01:04:40] 2025-07-27 05:04:39,896 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 01:04:40] 2025-07-27 05:04:39,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 01:04:40] 2025-07-27 05:04:39,896 | INFO     | [monitor] control thread has ended
[2025-07-27 01:04:40] 2025-07-27 05:04:40,062 [wrapper] ==== pilot stdout END ====
[2025-07-27 01:04:40] 2025-07-27 05:04:40,065 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 01:04:40] 2025-07-27 05:04:40,069 [wrapper] pilotpid: 3793132
[2025-07-27 01:04:40] 2025-07-27 05:04:40,074 [wrapper] Pilot exit status: 0
[2025-07-27 01:04:40] 2025-07-27 05:04:40,088 [wrapper] pandaids: 6745503332
[2025-07-27 01:04:40] 2025-07-27 05:04:40,149 [wrapper] cleanup supervisor_pilot 3948703 3793133
[2025-07-27 01:04:40] 2025-07-27 05:04:40,152 [wrapper] Test setup, not cleaning
[2025-07-27 01:04:40] 2025-07-27 05:04:40,156 [wrapper] apfmon messages muted
[2025-07-27 01:04:40] 2025-07-27 05:04:40,160 [wrapper] ==== wrapper stdout END ====
[2025-07-27 01:04:40] 2025-07-27 05:04:40,163 [wrapper] ==== wrapper stderr END ====
[2025-07-27 01:04:40]  *** Error codes and diagnostics ***
[2025-07-27 01:04:40]     "exeErrorCode": 0,
[2025-07-27 01:04:40]     "exeErrorDiag": "",
[2025-07-27 01:04:40]     "pilotErrorCode": 0,
[2025-07-27 01:04:40]     "pilotErrorDiag": "",
[2025-07-27 01:04:40]  *** Listing of results directory ***
[2025-07-27 01:04:40] total 391380
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 16:42 pilot3.tar.gz
[2025-07-27 01:04:40] -rwx------. 1 boincer umatlas     36292 Jul 26 16:46 runpilot2-wrapper.sh
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 16:46 queuedata.json
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas       100 Jul 26 23:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 01:04:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 23:49 run_atlas
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas       105 Jul 26 23:49 job.xml
[2025-07-27 01:04:40] -rw-r--r--. 2 boincer umatlas 190789752 Jul 26 23:49 EVNT.45743347._002521.pool.root.1
[2025-07-27 01:04:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 23:49 start_atlas.sh
[2025-07-27 01:04:40] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 23:49 shared
[2025-07-27 01:04:40] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 23:49 input.tar.gz
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas         0 Jul 26 23:49 boinc_lockfile
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 23:49 pandaJob.out
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas    980125 Jul 26 23:49 agis_schedconf.cvmfs.json
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas   1593052 Jul 26 23:49 agis_ddmendpoints.agis.ALL.json
[2025-07-27 01:04:40] drwx------. 4 boincer umatlas      4096 Jul 26 23:49 pilot3
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 01:02 init_data.xml
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas 204485053 Jul 27 01:03 HITS.45743349._044136.pool.root.1
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas       530 Jul 27 01:03 boinc_task_state.xml
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas      1030 Jul 27 01:03 memory_monitor_summary.json
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas    365102 Jul 27 01:04 log.45743349._044136.job.log.tgz.1
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas      7822 Jul 27 01:04 heartbeat.json
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 01:04 boinc_mmap_file
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas        27 Jul 27 01:04 wrapper_checkpoint.txt
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas        95 Jul 27 01:04 pilot_heartbeat.json
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas       823 Jul 27 01:04 pilotlog.txt
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas    443152 Jul 27 01:04 log.45743349._044136.job.log.1
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas       357 Jul 27 01:04 output.list
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas       620 Jul 27 01:04 runtime_log
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas    829440 Jul 27 01:04 result.tar.gz
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 01:04 runtime_log.err
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas       654 Jul 27 01:04 NeqNDmIy0z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmI5SLDmCnlBbm.diag
[2025-07-27 01:04:40] -rw-r--r--. 1 boincer umatlas     21666 Jul 27 01:04 stderr.txt
[2025-07-27 01:04:40] HITS file was successfully produced:
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas 204485053 Jul 27 01:03 shared/HITS.pool.root.1
[2025-07-27 01:04:40]  *** Contents of shared directory: ***
[2025-07-27 01:04:40] total 387380
[2025-07-27 01:04:40] -rw-r--r--. 2 boincer umatlas 190789752 Jul 26 23:49 ATLAS.root_0
[2025-07-27 01:04:40] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 23:49 start_atlas.sh
[2025-07-27 01:04:40] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 23:49 input.tar.gz
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas 204485053 Jul 27 01:03 HITS.pool.root.1
[2025-07-27 01:04:40] -rw-------. 1 boincer umatlas    829440 Jul 27 01:04 result.tar.gz
01:04:42 (3788632): run_atlas exited; CPU time 45466.038257
01:04:42 (3788632): called boinc_finish(0)

</stderr_txt>
]]>

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