Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:05:57 (513816): wrapper (7.7.26015): starting
17:05:57 (513816): wrapper: running run_atlas (--nthreads 3)
[2025-07-27 17:05:57] Arguments: --nthreads 3
[2025-07-27 17:05:57] Threads: 3
[2025-07-27 17:05:57] Checking for CVMFS
[2025-07-27 17:05:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 17:05:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 17:05:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 17:05:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 17:05:57] 2.9.2.0 3466416 4363 85772 148815 2 57 35186985 36864001 0 130560 0 3310307 99.991 152690 2069 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 17:05:57] CVMFS is ok
[2025-07-27 17:05:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 17:05:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 17:05:57] Further information can be found at the LHC@home message board.
[2025-07-27 17:05:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 17:05:57] Checking for apptainer binary...
[2025-07-27 17:05:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 17:05:57] Running /usr/bin/apptainer --version
[2025-07-27 17:05:57] apptainer version 1.4.1-1.1
[2025-07-27 17:05:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 17:05:57] magicA252
[2025-07-27 17:05:57] apptainer works
[2025-07-27 17:05:57] Set ATHENA_PROC_NUMBER=3
[2025-07-27 17:05:57] Set ATHENA_CORE_NUMBER=3
[2025-07-27 17:05:57] Starting ATLAS job with PandaID=6745735722
[2025-07-27 17:05:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:35:52]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:35:52]  is_altstaged=None
[2025-07-27 18:35:52]  is_tar=False
[2025-07-27 18:35:52]  lfn=log.45743349._044436.job.log.tgz.1
[2025-07-27 18:35:52]  mtime=0
[2025-07-27 18:35:52]  protocol_id=None
[2025-07-27 18:35:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:35:52]  replicas=None
[2025-07-27 18:35:52]  scope=mc23_13p6TeV
[2025-07-27 18:35:52]  status=None
[2025-07-27 18:35:52]  status_code=0
[2025-07-27 18:35:52]  storage_token=
[2025-07-27 18:35:52]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6745735722/log.45743349._044436.job.log.tgz.1
[2025-07-27 18:35:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/03/log.45743349._044436.job.log.tgz.1
[2025-07-27 18:35:52]  workdir=None
[2025-07-27 18:35:52] ]
[2025-07-27 18:35:52] 2025-07-27 16:35:13,397 | INFO     | transferring file log.45743349._044436.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745735722/log.45743349._044436.job.log.tgz.1 to /local/data/boinc/
[2025-07-27 18:35:52] 2025-07-27 16:35:13,397 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745735722/log.45743349._044436.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0444
[2025-07-27 18:35:52] 2025-07-27 16:35:13,409 | INFO     | adding to output.list: log.45743349._044436.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/03/log.45743349._044436.job.log.tg
[2025-07-27 18:35:52] 2025-07-27 16:35:13,409 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:35:52] 2025-07-27 16:35:13,410 | INFO     | summary of transferred files:
[2025-07-27 18:35:52] 2025-07-27 16:35:13,410 | INFO     |  -- lfn=log.45743349._044436.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:35:52] 2025-07-27 16:35:13,410 | INFO     | stage-out finished correctly
[2025-07-27 18:35:52] 2025-07-27 16:35:14,909 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:35:52] 2025-07-27 16:35:15,371 | INFO     | monitor loop #413: job 0:6745735722 is in state 'finished'
[2025-07-27 18:35:52] 2025-07-27 16:35:15,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:35:52] 2025-07-27 16:35:16,622 | INFO     | job 6745735722 has state=finished
[2025-07-27 18:35:52] 2025-07-27 16:35:16,622 | INFO     | preparing for final server update for job 6745735722 in state='finished'
[2025-07-27 18:35:52] 2025-07-27 16:35:16,623 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:35:52] 2025-07-27 16:35:16,623 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:35:52] 2025-07-27 16:35:16,623 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:35:52] 2025-07-27 16:35:16,623 | INFO     | job 6745735722 has finished - writing final server update
[2025-07-27 18:35:52] 2025-07-27 16:35:16,623 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:35:52] 2025-07-27 16:35:16,624 | INFO     | executing command: lscpu
[2025-07-27 18:35:52] 2025-07-27 16:35:16,640 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:35:52] 2025-07-27 16:35:17,874 | INFO     | monitor loop #414: job 0:6745735722 is in state 'finished'
[2025-07-27 18:35:52] 2025-07-27 16:35:17,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:35:52] 2025-07-27 16:35:20,200 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:35:52] 2025-07-27 16:35:20,201 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3660.717666666667
[2025-07-27 18:35:52] 2025-07-27 16:35:20,202 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745735722/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:35:52] 2025-07-27 16:35:20,203 | INFO     | extracted standard info from prmon json
[2025-07-27 18:35:52] 2025-07-27 16:35:20,203 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:35:52] 2025-07-27 16:35:20,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:35:52] 2025-07-27 16:35:20,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:35:52] 2025-07-27 16:35:20,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:35:52] 2025-07-27 16:35:20,203 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | sum of square deviations: 164765880.0
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | sum of deviations: -171060164.9999999
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | mean x: 1753631528.0
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | mean y: 2360611.4444444445
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | -- intersect: 1822983294.544137
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | intersect: 1822983294.544137
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | chi2: 0.024140901483630132
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | -- intersect: 1822983294.544137
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | current memory leak: -1.04 B/s (using 81 data points, chi2=0.02)
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | could have reported an average CPU frequency of 3892 MHz (6 samples)
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | ..............................
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | . Timing measurements:
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | . get job = 0 s
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | . initial setup = 1 s
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | . payload setup = 3 s
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | . stage-in = 0 s
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | . payload execution = 5329 s
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | . stage-out = 0 s
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | . log creation = 0 s
[2025-07-27 18:35:52] 2025-07-27 16:35:20,204 | INFO     | ..............................
[2025-07-27 18:35:52] 2025-07-27 16:35:20,309 | INFO     | 
[2025-07-27 18:35:52] 2025-07-27 16:35:20,309 | INFO     | job summary report
[2025-07-27 18:35:52] 2025-07-27 16:35:20,309 | INFO     | --------------------------------------------------
[2025-07-27 18:35:52] 2025-07-27 16:35:20,309 | INFO     | PanDA job id: 6745735722
[2025-07-27 18:35:52] 2025-07-27 16:35:20,309 | INFO     | task id: 45743349
[2025-07-27 18:35:52] 2025-07-27 16:35:20,309 | INFO     | errors: (none)
[2025-07-27 18:35:52] 2025-07-27 16:35:20,309 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:35:52] 2025-07-27 16:35:20,309 | INFO     | pilot state: finished 
[2025-07-27 18:35:52] 2025-07-27 16:35:20,309 | INFO     | transexitcode: 0
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | exeerrorcode: 0
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | exeerrordiag: 
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | exitcode: 0
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | exitmsg: OK
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | cpuconsumptiontime: 15391 s
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | nevents: 400
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | neventsw: 0
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | pid: 523963
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | pgrp: 523963
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | corecount: 3
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | event service: False
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | sizes: {0: 2397478, 2: 2397740, 10: 2397768, 5336: 2424411, 5337: 2433415, 5338: 2433471, 5343: 2433793}
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | --------------------------------------------------
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | 
[2025-07-27 18:35:52] 2025-07-27 16:35:20,310 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | job 6745735722 has completed (purged errors)
[2025-07-27 18:35:52] 2025-07-27 16:35:20,326 | INFO     | overall cleanup function is called
[2025-07-27 18:35:52] 2025-07-27 16:35:21,327 | INFO     | --- collectZombieJob: --- 10, [523963]
[2025-07-27 18:35:52] 2025-07-27 16:35:21,328 | INFO     | zombie collector waiting for pid 523963
[2025-07-27 18:35:52] 2025-07-27 16:35:21,328 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:35:52] 2025-07-27 16:35:21,328 | INFO     | collected zombie processes
[2025-07-27 18:35:52] 2025-07-27 16:35:21,328 | INFO     | will attempt to kill all subprocesses of pid=523963
[2025-07-27 18:35:52] 2025-07-27 16:35:21,367 | INFO     | process IDs to be killed: [523963] (in reverse order)
[2025-07-27 18:35:52] 2025-07-27 16:35:21,391 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:35:52] 2025-07-27 16:35:21,391 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:35:52] 2025-07-27 16:35:21,392 | INFO     | did not find any defunct processes belonging to 523963
[2025-07-27 18:35:52] 2025-07-27 16:35:21,393 | INFO     | did not find any defunct processes belonging to 523963
[2025-07-27 18:35:52] 2025-07-27 16:35:21,393 | INFO     | ready for new job
[2025-07-27 18:35:52] 2025-07-27 16:35:21,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:35:52] 2025-07-27 16:35:21,394 | INFO     | ***************************************
[2025-07-27 18:35:52] 2025-07-27 16:35:21,394 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:35:52] 2025-07-27 16:35:21,394 | INFO     | ***************************************
[2025-07-27 18:35:52] 2025-07-27 16:35:21,394 | INFO     | 
[2025-07-27 18:35:52] 2025-07-27 16:35:21,394 | INFO     | architecture information:
[2025-07-27 18:35:52] 2025-07-27 16:35:21,394 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:35:52] 2025-07-27 16:35:21,403 | INFO     | cat /etc/os-release:
[2025-07-27 18:35:52] NAME="CentOS Linux"
[2025-07-27 18:35:52] VERSION="7 (Core)"
[2025-07-27 18:35:52] ID="centos"
[2025-07-27 18:35:52] ID_LIKE="rhel fedora"
[2025-07-27 18:35:52] VERSION_ID="7"
[2025-07-27 18:35:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:35:52] ANSI_COLOR="0;31"
[2025-07-27 18:35:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:35:52] HOME_URL="https://www.centos.org/"
[2025-07-27 18:35:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:35:52] 
[2025-07-27 18:35:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:35:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:35:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:35:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:35:52] 
[2025-07-27 18:35:52] 2025-07-27 16:35:21,403 | INFO     | ***************************************
[2025-07-27 18:35:52] 2025-07-27 16:35:21,904 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 18:35:52] 2025-07-27 16:35:21,916 | INFO     | sufficient remaining disk space (364623429632 B)
[2025-07-27 18:35:52] 2025-07-27 16:35:21,917 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:35:52] 2025-07-27 16:35:21,917 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:35:52] 2025-07-27 16:35:21,917 | INFO     | update_server=False
[2025-07-27 18:35:52] 2025-07-27 16:35:21,917 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:35:52] 2025-07-27 16:35:21,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:35:52] 2025-07-27 16:35:21,917 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:35:52] 2025-07-27 16:35:21,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:35:52] 2025-07-27 16:35:21,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:35:52] 2025-07-27 16:35:21,917 | INFO     | aborting loop
[2025-07-27 18:35:52] 2025-07-27 16:35:22,121 | INFO     | all payload control threads have been joined
[2025-07-27 18:35:52] 2025-07-27 16:35:22,636 | INFO     | all job control threads have been joined
[2025-07-27 18:35:52] 2025-07-27 16:35:22,918 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:22,923 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:22,923 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:22,931 | INFO     | all data control threads have been joined
[2025-07-27 18:35:52] 2025-07-27 16:35:23,036 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:23,127 | INFO     | [payload] control thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:23,212 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:23,641 | INFO     | [job] control thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:23,740 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:23,819 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:23,924 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:23,937 | INFO     | [data] control thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:24,331 | INFO     | [job] validate thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:24,421 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:24,422 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:25,924 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:32,849 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:35:52] 2025-07-27 16:35:33,854 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:35:52] 2025-07-27 16:35:35,170 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140637056780096)>', '<ExcThread(monitor, started 140636263008000)>']
[2025-07-27 18:35:52] 2025-07-27 16:35:40,187 | INFO     | all workflow threads have been joined
[2025-07-27 18:35:52] 2025-07-27 16:35:40,187 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:35:52] 2025-07-27 16:35:40,187 | INFO     | traces error code: 0
[2025-07-27 18:35:52] 2025-07-27 16:35:40,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:35:52] 2025-07-27 16:35:52,872 | INFO     | PID=517461 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 18:35:52] 2025-07-27 16:35:52,872 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:35:52] 2025-07-27 16:35:52,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:35:52] 2025-07-27 16:35:52,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:35:52] 2025-07-27 16:35:52,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:35:52] 2025-07-27 16:35:52,873 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 18:35:52] 2025-07-27 16:35:52,873 | INFO     | [monitor] control thread has ended
[2025-07-27 18:35:52] 2025-07-27 16:35:52,917 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:35:52] 2025-07-27 16:35:52,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:35:52] 2025-07-27 16:35:52,922 [wrapper] pilotpid: 517461
[2025-07-27 18:35:52] 2025-07-27 16:35:52,925 [wrapper] Pilot exit status: 0
[2025-07-27 18:35:52] 2025-07-27 16:35:52,932 [wrapper] pandaids: 6745735722
[2025-07-27 18:35:52] 2025-07-27 16:35:52,948 [wrapper] cleanup supervisor_pilot  536028 517462
[2025-07-27 18:35:52] 2025-07-27 16:35:52,950 [wrapper] Test setup, not cleaning
[2025-07-27 18:35:52] 2025-07-27 16:35:52,953 [wrapper] apfmon messages muted
[2025-07-27 18:35:52] 2025-07-27 16:35:52,955 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:35:52] 2025-07-27 16:35:52,957 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:35:52]  *** Error codes and diagnostics ***
[2025-07-27 18:35:52]     "exeErrorCode": 0,
[2025-07-27 18:35:52]     "exeErrorDiag": "",
[2025-07-27 18:35:52]     "pilotErrorCode": 0,
[2025-07-27 18:35:52]     "pilotErrorDiag": "",
[2025-07-27 18:35:52]  *** Listing of results directory ***
[2025-07-27 18:35:53] total 435228
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc    530466 Jul 26 22:42 pilot3.tar.gz
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc      5112 Jul 26 23:09 queuedata.json
[2025-07-27 18:35:53] -rwx------ 1 boinc boinc     36292 Jul 26 23:10 runpilot2-wrapper.sh
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc       100 Jul 27 17:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:35:53] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 17:05 run_atlas
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc       105 Jul 27 17:05 job.xml
[2025-07-27 18:35:53] -rw-r--r-- 2 boinc boinc 230552329 Jul 27 17:05 EVNT.45743347._002547.pool.root.1
[2025-07-27 18:35:53] -rw-r--r-- 2 boinc boinc    542898 Jul 27 17:05 input.tar.gz
[2025-07-27 18:35:53] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:05 start_atlas.sh
[2025-07-27 18:35:53] drwxrwx--x 2 boinc boinc      4096 Jul 27 17:05 shared
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc         0 Jul 27 17:05 boinc_setup_complete
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc      6526 Jul 27 17:05 init_data.xml
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc         0 Jul 27 17:05 boinc_lockfile
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc      2563 Jul 27 17:05 pandaJob.out
[2025-07-27 18:35:53] -rw------- 1 boinc boinc    980109 Jul 27 17:06 agis_schedconf.cvmfs.json
[2025-07-27 18:35:53] -rw------- 1 boinc boinc   1593052 Jul 27 17:06 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:35:53] drwx------ 4 boinc boinc      4096 Jul 27 17:06 pilot3
[2025-07-27 18:35:53] -rw------- 1 boinc boinc 209765501 Jul 27 18:34 HITS.45743349._044436.pool.root.1
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc       529 Jul 27 18:34 boinc_task_state.xml
[2025-07-27 18:35:53] -rw------- 1 boinc boinc      1020 Jul 27 18:35 memory_monitor_summary.json
[2025-07-27 18:35:53] -rw------- 1 boinc boinc    223431 Jul 27 18:35 log.45743349._044436.job.log.tgz.1
[2025-07-27 18:35:53] -rw------- 1 boinc boinc      7750 Jul 27 18:35 heartbeat.json
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc      8192 Jul 27 18:35 boinc_mmap_file
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc        27 Jul 27 18:35 wrapper_checkpoint.txt
[2025-07-27 18:35:53] -rw------- 1 boinc boinc       816 Jul 27 18:35 pilotlog.txt
[2025-07-27 18:35:53] -rw------- 1 boinc boinc        95 Jul 27 18:35 pilot_heartbeat.json
[2025-07-27 18:35:53] -rw------- 1 boinc boinc    515897 Jul 27 18:35 log.45743349._044436.job.log.1
[2025-07-27 18:35:53] -rw------- 1 boinc boinc       357 Jul 27 18:35 output.list
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc       620 Jul 27 18:35 runtime_log
[2025-07-27 18:35:53] -rw------- 1 boinc boinc    757760 Jul 27 18:35 result.tar.gz
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc      8749 Jul 27 18:35 runtime_log.err
[2025-07-27 18:35:53] -rw------- 1 boinc boinc       661 Jul 27 18:35 iwQKDmRL1z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmD9SLDmWsBkYm.diag
[2025-07-27 18:35:53] -rw-r--r-- 1 boinc boinc     21441 Jul 27 18:35 stderr.txt
[2025-07-27 18:35:53] HITS file was successfully produced:
[2025-07-27 18:35:53] -rw------- 1 boinc boinc 209765501 Jul 27 18:34 shared/HITS.pool.root.1
[2025-07-27 18:35:53]  *** Contents of shared directory: ***
[2025-07-27 18:35:53] total 431300
[2025-07-27 18:35:53] -rw-r--r-- 2 boinc boinc 230552329 Jul 27 17:05 ATLAS.root_0
[2025-07-27 18:35:53] -rw-r--r-- 2 boinc boinc    542898 Jul 27 17:05 input.tar.gz
[2025-07-27 18:35:53] -rw-r--r-- 2 boinc boinc     15095 Jul 27 17:05 start_atlas.sh
[2025-07-27 18:35:53] -rw------- 1 boinc boinc 209765501 Jul 27 18:34 HITS.pool.root.1
[2025-07-27 18:35:53] -rw------- 1 boinc boinc    757760 Jul 27 18:35 result.tar.gz
18:35:54 (513816): run_atlas exited; CPU time 15400.879868
18:35:54 (513816): called boinc_finish(0)

</stderr_txt>
]]>

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